Wall clock time and date at job start Tue Mar 31 2020 22:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86796 * 120.00138 * 2 1 4 4 H 1.48508 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47219 * 300.00418 * 3 2 1 6 6 H 1.48501 * 109.47311 * 60.00407 * 3 2 1 7 7 C 1.39947 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00139 * 162.20915 * 7 2 1 9 9 C 1.41399 * 119.99983 * 342.20608 * 7 2 1 10 10 C 1.40729 * 120.24285 * 335.28418 * 9 7 2 11 11 C 1.37596 * 119.74322 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25191 * 0.02562 * 11 10 9 13 13 C 1.38616 * 120.49649 * 359.97438 * 12 11 10 14 14 S 1.76208 * 119.87237 * 180.02562 * 13 12 11 15 15 O 1.42099 * 106.40285 * 23.52415 * 14 13 12 16 16 O 1.42102 * 106.39715 * 156.44218 * 14 13 12 17 17 N 1.65598 * 107.21882 * 269.98410 * 14 13 12 18 18 C 1.46499 * 120.00011 * 90.00512 * 17 14 13 19 19 C 1.50690 * 109.47218 * 94.99697 * 18 17 14 20 20 O 1.20826 * 120.00482 * 0.02562 * 19 18 17 21 21 O 1.34233 * 119.99918 * 179.97438 * 19 18 17 22 22 C 1.46503 * 119.99840 * 269.99993 * 17 14 13 23 23 C 1.53781 * 113.61199 * 219.14108 * 22 17 14 24 24 C 1.53956 * 87.01682 * 220.04500 * 23 22 17 25 25 C 1.53774 * 113.61248 * 121.53087 * 22 17 14 26 26 C 1.37632 * 120.25276 * 0.02562 * 13 12 11 27 27 H 0.97004 * 119.99812 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.13082 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.87589 * 180.02562 * 11 10 9 30 30 H 1.08003 * 119.75047 * 180.02562 * 12 11 10 31 31 H 1.09000 * 109.46579 * 215.00017 * 18 17 14 32 32 H 1.09001 * 109.47043 * 334.99130 * 18 17 14 33 33 H 0.96701 * 117.00225 * 179.97438 * 21 19 18 34 34 H 1.09002 * 112.84581 * 350.33360 * 22 17 14 35 35 H 1.08998 * 113.61750 * 334.56223 * 23 22 17 36 36 H 1.08997 * 113.61450 * 105.47522 * 23 22 17 37 37 H 1.08991 * 113.54015 * 270.80879 * 24 23 22 38 38 H 1.09001 * 113.66621 * 139.92648 * 24 23 22 39 39 H 1.09000 * 113.61434 * 254.52617 * 25 22 17 40 40 H 1.08996 * 113.61879 * 25.35207 * 25 22 17 41 41 H 1.07994 * 120.13140 * 180.27210 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2343 -0.2863 9 6 1.3516 -2.4074 0.3731 10 6 0.2236 -2.3638 1.2135 11 6 -0.4068 -3.5334 1.5711 12 6 0.0656 -4.7517 1.1072 13 6 1.1758 -4.8064 0.2790 14 16 1.7617 -6.3636 -0.3015 15 8 0.6564 -7.2547 -0.2449 16 8 2.4870 -6.0997 -1.4947 17 7 2.8644 -6.9155 0.8038 18 6 2.4229 -7.7459 1.9270 19 6 2.5889 -9.2009 1.5718 20 8 3.0311 -9.5124 0.4914 21 8 2.2464 -10.1509 2.4560 22 6 4.2815 -6.5734 0.6583 23 6 5.2334 -7.7284 1.0113 24 6 6.1305 -6.6758 1.6876 25 6 4.8621 -5.8254 1.8699 26 6 1.8222 -3.6493 -0.0916 27 1 -0.4850 0.8401 0.0004 28 1 -0.1458 -1.4161 1.5764 29 1 -1.2729 -3.5025 2.2156 30 1 -0.4357 -5.6648 1.3926 31 1 3.0236 -7.5158 2.8070 32 1 1.3736 -7.5412 2.1398 33 1 2.3706 -11.0702 2.1829 34 1 4.5063 -6.0986 -0.2968 35 1 4.8055 -8.4496 1.7076 36 1 5.6908 -8.1988 0.1409 37 1 6.8621 -6.2298 1.0140 38 1 6.5688 -7.0129 2.6269 39 1 5.0203 -4.7618 1.6917 40 1 4.3317 -6.0243 2.8011 41 1 2.6843 -3.6939 -0.7405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593943039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:44 Heat of formation + Delta-G solvation = -119.458453 kcal Electronic energy + Delta-G solvation = -28151.253797 eV Core-core repulsion = 24123.790930 eV Total energy + Delta-G solvation = -4027.462867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51377 -38.90322 -37.68082 -36.79366 -36.14193 -35.34684 -34.21117 -33.87893 -30.11987 -29.84024 -28.46277 -25.61669 -25.52584 -24.43171 -22.04746 -21.84985 -21.02460 -19.38993 -18.87123 -18.23651 -18.15285 -17.35123 -16.75161 -16.30277 -15.89662 -15.55370 -15.24141 -15.11056 -14.76869 -14.61923 -13.53647 -13.49843 -13.35315 -13.04876 -12.76533 -12.64236 -12.54687 -12.35301 -12.06381 -11.93735 -11.62961 -11.56673 -11.45464 -11.43377 -11.38473 -11.09499 -10.99079 -10.91548 -10.85445 -10.61620 -10.47173 -10.32648 -9.80747 -9.66086 -9.38763 -8.98838 -8.07985 -7.74371 -6.95645 -4.56907 0.81782 2.13931 2.15520 2.59100 2.87119 2.98606 3.01568 3.04670 3.34212 3.80562 4.23686 4.35452 4.50812 4.63050 4.66580 4.81282 4.88981 4.91513 5.11888 5.19317 5.33901 5.44618 5.65417 5.68526 5.79605 5.94138 5.96970 6.05723 6.09332 6.12116 6.38797 6.42988 6.54786 6.61900 6.72360 6.85756 7.00917 7.17457 7.33574 7.67902 7.76742 7.82861 7.90341 8.36490 8.63517 8.67959 10.00071 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.003793 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.308682 B = 7379.558985 C = 8185.823940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.258 1.258 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.460 4.460 8 H 0.083 0.917 9 C 0.093 3.907 10 C -0.117 4.117 11 C -0.119 4.119 12 C -0.150 4.150 13 C -0.629 4.629 14 S 2.683 3.317 15 O -0.970 6.970 16 O -0.961 6.961 17 N -0.972 5.972 18 C 0.135 3.865 19 C 0.460 3.540 20 O -0.500 6.500 21 O -0.519 6.519 22 C 0.126 3.874 23 C -0.138 4.138 24 C -0.142 4.142 25 C -0.153 4.153 26 C -0.124 4.124 27 H 0.283 0.717 28 H 0.125 0.875 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.408 0.592 34 H 0.130 0.870 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 -10.787 7.918 15.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.182 1.182 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.489 4.489 8 H 0.101 0.899 9 C 0.089 3.911 10 C -0.137 4.137 11 C -0.139 4.139 12 C -0.171 4.171 13 C -0.722 4.722 14 S 2.781 3.219 15 O -0.961 6.961 16 O -0.952 6.952 17 N -0.805 5.805 18 C 0.007 3.993 19 C 0.299 3.701 20 O -0.386 6.386 21 O -0.330 6.330 22 C 0.020 3.980 23 C -0.178 4.178 24 C -0.180 4.180 25 C -0.192 4.192 26 C -0.145 4.145 27 H 0.094 0.906 28 H 0.142 0.858 29 H 0.117 0.883 30 H 0.123 0.877 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.267 0.733 34 H 0.147 0.853 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 6.775 -10.775 6.914 14.485 hybrid contribution 0.162 0.735 0.198 0.778 sum 6.936 -10.040 7.112 14.124 Atomic orbital electron populations 1.69787 1.07697 1.29611 1.34652 1.25942 0.94773 1.01601 0.92031 0.86204 0.81020 0.80546 0.78703 1.18200 1.19829 1.19595 1.19643 0.98396 0.90947 1.39881 0.89852 1.17678 0.91793 0.91979 0.89625 1.21643 0.97572 0.97117 0.97346 1.20804 0.99295 0.93109 1.00674 1.20068 0.97357 0.97486 1.02203 1.29735 1.09137 1.17625 1.15662 1.02033 0.72386 0.74421 0.73034 1.93506 1.51893 1.64362 1.86299 1.93517 1.72657 1.86237 1.42753 1.57522 1.19255 1.61636 1.42063 1.20531 1.04287 0.83077 0.91406 1.24245 0.73664 0.89883 0.82318 1.90733 1.41048 1.83185 1.23664 1.84523 1.79901 1.20364 1.48233 1.22621 0.77869 0.97027 1.00449 1.23318 0.96854 0.96633 1.00953 1.22775 0.96548 0.97603 1.01048 1.23430 0.96371 1.00522 0.98900 1.20725 1.01083 0.91677 1.01046 0.90554 0.85750 0.88310 0.87670 0.85918 0.85442 0.73306 0.85254 0.90552 0.90760 0.89744 0.91138 0.90109 0.89512 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.43 10.97 55.55 0.61 -18.82 16 2 C 0.07 1.78 5.14 -17.34 -0.09 1.69 16 3 Si 0.91 17.65 29.59 -169.99 -5.03 12.62 16 4 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.48 9.05 -37.74 -0.34 -11.82 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 9 C 0.09 2.33 5.57 -106.82 -0.60 1.74 16 10 C -0.12 -2.83 8.70 -38.88 -0.34 -3.16 16 11 C -0.12 -2.59 10.02 -39.66 -0.40 -2.99 16 12 C -0.15 -3.14 9.53 -39.29 -0.37 -3.52 16 13 C -0.63 -13.49 5.97 -39.66 -0.24 -13.73 16 14 S 2.68 52.16 5.64 -107.50 -0.61 51.56 16 15 O -0.97 -20.29 16.24 -57.17 -0.93 -21.22 16 16 O -0.96 -21.02 15.89 -57.17 -0.91 -21.92 16 17 N -0.97 -14.60 2.53 -107.72 -0.27 -14.87 16 18 C 0.14 1.62 5.19 -5.20 -0.03 1.60 16 19 C 0.46 5.81 6.81 36.00 0.25 6.06 16 20 O -0.50 -7.93 15.81 -18.75 -0.30 -8.23 16 21 O -0.52 -4.83 13.42 -39.27 -0.53 -5.36 16 22 C 0.13 1.70 4.29 -67.12 -0.29 1.41 16 23 C -0.14 -1.58 6.44 -25.83 -0.17 -1.74 16 24 C -0.14 -1.35 8.09 -25.82 -0.21 -1.56 16 25 C -0.15 -1.71 7.64 -25.92 -0.20 -1.90 16 26 C -0.12 -2.90 9.26 -38.87 -0.36 -3.26 16 27 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 28 H 0.12 3.06 6.18 -52.49 -0.32 2.74 16 29 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 30 H 0.11 1.96 7.60 -52.48 -0.40 1.56 16 31 H 0.12 1.05 6.55 -51.93 -0.34 0.71 16 32 H 0.13 1.43 7.61 -51.93 -0.40 1.04 16 33 H 0.41 2.15 9.10 45.56 0.41 2.56 16 34 H 0.13 1.88 7.08 -51.93 -0.37 1.51 16 35 H 0.08 0.84 5.46 -51.93 -0.28 0.55 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 40 H 0.09 0.87 6.76 -51.93 -0.35 0.51 16 41 H 0.11 2.50 7.60 -52.49 -0.40 2.10 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -32.45 353.89 -10.11 -42.56 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -4.11 Total: 9.55 kcal Atomic # 6 Polarization: -27.82 SS G_CDS: -3.38 Total: -31.20 kcal Atomic # 7 Polarization: -34.03 SS G_CDS: 0.34 Total: -33.70 kcal Atomic # 8 Polarization: -54.07 SS G_CDS: -2.66 Total: -56.73 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -5.03 Total: 12.62 kcal Atomic # 16 Polarization: 52.16 SS G_CDS: -0.61 Total: 51.56 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.45 -10.11 -42.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593943039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.899 kcal (2) G-P(sol) polarization free energy of solvation -32.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds