Wall clock time and date at job start Tue Mar 31 2020 22:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86796 * 120.00138 * 2 1 4 4 H 1.48508 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47219 * 300.00418 * 3 2 1 6 6 H 1.48501 * 109.47311 * 60.00407 * 3 2 1 7 7 C 1.39947 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00139 * 162.20915 * 7 2 1 9 9 C 1.41399 * 119.99983 * 342.20608 * 7 2 1 10 10 C 1.40729 * 120.24285 * 335.28418 * 9 7 2 11 11 C 1.37596 * 119.74322 * 180.02562 * 10 9 7 12 12 C 1.38654 * 120.25191 * 0.02562 * 11 10 9 13 13 C 1.38616 * 120.49649 * 359.97438 * 12 11 10 14 14 S 1.76208 * 119.87237 * 180.02562 * 13 12 11 15 15 O 1.42099 * 106.40285 * 23.52415 * 14 13 12 16 16 O 1.42102 * 106.39715 * 156.44218 * 14 13 12 17 17 N 1.65598 * 107.21882 * 269.98410 * 14 13 12 18 18 C 1.46499 * 120.00011 * 90.00512 * 17 14 13 19 19 C 1.50690 * 109.47218 * 94.99697 * 18 17 14 20 20 O 1.20826 * 120.00482 * 0.02562 * 19 18 17 21 21 O 1.34233 * 119.99918 * 179.97438 * 19 18 17 22 22 C 1.46503 * 119.99840 * 269.99993 * 17 14 13 23 23 C 1.53781 * 113.61199 * 219.14108 * 22 17 14 24 24 C 1.53956 * 87.01682 * 220.04500 * 23 22 17 25 25 C 1.53774 * 113.61248 * 121.53087 * 22 17 14 26 26 C 1.37632 * 120.25276 * 0.02562 * 13 12 11 27 27 H 0.97004 * 119.99812 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.13082 * 0.02562 * 10 9 7 29 29 H 1.08004 * 119.87589 * 180.02562 * 11 10 9 30 30 H 1.08003 * 119.75047 * 180.02562 * 12 11 10 31 31 H 1.09000 * 109.46579 * 215.00017 * 18 17 14 32 32 H 1.09001 * 109.47043 * 334.99130 * 18 17 14 33 33 H 0.96701 * 117.00225 * 179.97438 * 21 19 18 34 34 H 1.09002 * 112.84581 * 350.33360 * 22 17 14 35 35 H 1.08998 * 113.61750 * 334.56223 * 23 22 17 36 36 H 1.08997 * 113.61450 * 105.47522 * 23 22 17 37 37 H 1.08991 * 113.54015 * 270.80879 * 24 23 22 38 38 H 1.09001 * 113.66621 * 139.92648 * 24 23 22 39 39 H 1.09000 * 113.61434 * 254.52617 * 25 22 17 40 40 H 1.08996 * 113.61879 * 25.35207 * 25 22 17 41 41 H 1.07994 * 120.13140 * 180.27210 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7023 1.3463 -0.0006 5 1 1.8834 2.3965 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0079 -1.2120 -0.0005 8 1 3.0492 -1.2343 -0.2863 9 6 1.3516 -2.4074 0.3731 10 6 0.2236 -2.3638 1.2135 11 6 -0.4068 -3.5334 1.5711 12 6 0.0656 -4.7517 1.1072 13 6 1.1758 -4.8064 0.2790 14 16 1.7617 -6.3636 -0.3015 15 8 0.6564 -7.2547 -0.2449 16 8 2.4870 -6.0997 -1.4947 17 7 2.8644 -6.9155 0.8038 18 6 2.4229 -7.7459 1.9270 19 6 2.5889 -9.2009 1.5718 20 8 3.0311 -9.5124 0.4914 21 8 2.2464 -10.1509 2.4560 22 6 4.2815 -6.5734 0.6583 23 6 5.2334 -7.7284 1.0113 24 6 6.1305 -6.6758 1.6876 25 6 4.8621 -5.8254 1.8699 26 6 1.8222 -3.6493 -0.0916 27 1 -0.4850 0.8401 0.0004 28 1 -0.1458 -1.4161 1.5764 29 1 -1.2729 -3.5025 2.2156 30 1 -0.4357 -5.6648 1.3926 31 1 3.0236 -7.5158 2.8070 32 1 1.3736 -7.5412 2.1398 33 1 2.3706 -11.0702 2.1829 34 1 4.5063 -6.0986 -0.2968 35 1 4.8055 -8.4496 1.7076 36 1 5.6908 -8.1988 0.1409 37 1 6.8621 -6.2298 1.0140 38 1 6.5688 -7.0129 2.6269 39 1 5.0203 -4.7618 1.6917 40 1 4.3317 -6.0243 2.8011 41 1 2.6843 -3.6939 -0.7405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593943039.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:43 Heat of formation + Delta-G solvation = -141.241401 kcal Electronic energy + Delta-G solvation = -28152.198377 eV Core-core repulsion = 24123.790930 eV Total energy + Delta-G solvation = -4028.407447 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.48003 -39.85335 -39.44757 -38.40180 -37.06481 -36.97836 -35.66551 -35.28276 -31.91423 -31.59937 -29.47535 -27.34295 -26.50763 -25.41598 -23.65653 -22.96603 -22.76185 -20.58757 -20.05949 -19.69697 -19.15221 -18.77149 -17.93825 -17.70710 -17.25557 -16.88773 -16.57974 -16.47713 -16.19204 -15.99017 -15.25554 -15.08524 -14.40670 -14.31610 -13.96807 -13.92131 -13.71633 -13.53470 -13.41198 -13.32545 -13.19702 -13.10611 -13.07486 -12.86204 -12.84603 -12.59554 -12.46227 -12.18521 -12.03156 -11.80645 -11.55527 -11.47594 -11.31842 -11.18666 -11.14030 -10.15732 -9.84306 -9.55466 -8.72682 -6.44427 -0.69439 0.38735 0.84680 1.20527 1.38861 1.45343 1.53926 1.81556 2.16791 2.19105 2.56317 2.75409 3.24378 3.44125 3.57346 3.73475 3.83252 3.91414 4.02162 4.22746 4.28688 4.33151 4.44276 4.47236 4.78883 4.80465 4.84988 4.90721 4.94345 5.01805 5.11445 5.16749 5.19000 5.21975 5.39371 5.44167 5.56256 5.61572 5.64609 5.88976 5.94315 6.11189 6.53293 6.80667 6.85111 7.01182 8.25737 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.003793 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.308682 B = 7379.558985 C = 8185.823940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.256 1.256 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.496 4.496 8 H 0.080 0.920 9 C 0.065 3.935 10 C -0.138 4.138 11 C -0.120 4.120 12 C -0.146 4.146 13 C -0.633 4.633 14 S 2.703 3.297 15 O -0.985 6.985 16 O -0.993 6.993 17 N -0.964 5.964 18 C 0.120 3.880 19 C 0.465 3.535 20 O -0.539 6.539 21 O -0.506 6.506 22 C 0.105 3.895 23 C -0.132 4.132 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.142 4.142 27 H 0.292 0.708 28 H 0.114 0.886 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.164 0.836 32 H 0.139 0.861 33 H 0.428 0.572 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.065 0.935 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.740 -11.680 10.049 17.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.178 4.178 3 Si 0.804 3.196 4 H -0.180 1.180 5 H -0.194 1.194 6 H -0.185 1.185 7 C -0.525 4.525 8 H 0.099 0.901 9 C 0.062 3.938 10 C -0.158 4.158 11 C -0.139 4.139 12 C -0.167 4.167 13 C -0.723 4.723 14 S 2.800 3.200 15 O -0.975 6.975 16 O -0.983 6.983 17 N -0.800 5.800 18 C -0.007 4.007 19 C 0.306 3.694 20 O -0.429 6.429 21 O -0.319 6.319 22 C 0.000 4.000 23 C -0.171 4.171 24 C -0.164 4.164 25 C -0.188 4.188 26 C -0.164 4.164 27 H 0.102 0.898 28 H 0.132 0.868 29 H 0.148 0.852 30 H 0.153 0.847 31 H 0.181 0.819 32 H 0.156 0.844 33 H 0.290 0.710 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.123 0.877 41 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.331 -11.681 9.069 16.505 hybrid contribution -0.056 0.802 -0.414 0.904 sum 7.275 -10.879 8.654 15.690 Atomic orbital electron populations 1.69825 1.09026 1.30948 1.35221 1.26756 0.95494 1.04579 0.91010 0.85138 0.79531 0.75978 0.79000 1.17982 1.19389 1.18485 1.19891 0.98644 0.92180 1.41794 0.90142 1.18012 0.92649 0.92765 0.90355 1.21660 0.98130 0.97717 0.98249 1.21147 0.99751 0.92480 1.00495 1.20480 0.96754 0.98418 1.01065 1.30105 1.09042 1.18288 1.14865 1.01293 0.72308 0.73441 0.72990 1.93475 1.53221 1.64074 1.86739 1.93472 1.73215 1.86496 1.45145 1.57140 1.18881 1.61720 1.42298 1.20998 1.05806 0.82528 0.91354 1.24250 0.72783 0.90532 0.81873 1.90736 1.43050 1.83816 1.25282 1.84470 1.78962 1.21418 1.47037 1.22923 0.77217 0.99025 1.00861 1.23308 0.96387 0.96430 1.01010 1.22738 0.95732 0.95981 1.01975 1.23467 0.97140 0.99896 0.98331 1.20760 1.01639 0.92147 1.01805 0.89757 0.86850 0.85237 0.84731 0.81853 0.84365 0.71044 0.87355 0.89584 0.91650 0.89371 0.88696 0.91232 0.87690 0.87569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.30 10.97 21.83 0.24 -41.06 16 2 C 0.04 1.79 5.14 85.26 0.44 2.22 16 3 Si 0.98 36.50 29.59 68.60 2.03 38.53 16 4 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 7 C -0.50 -25.74 9.05 23.46 0.21 -25.53 16 8 H 0.08 4.03 7.91 -2.91 -0.02 4.01 16 9 C 0.07 3.40 5.57 -21.29 -0.12 3.28 16 10 C -0.14 -6.78 8.70 22.73 0.20 -6.59 16 11 C -0.12 -5.09 10.02 22.22 0.22 -4.87 16 12 C -0.15 -5.96 9.53 22.46 0.21 -5.74 16 13 C -0.63 -27.20 5.97 22.22 0.13 -27.07 16 14 S 2.70 104.96 5.64 -56.49 -0.32 104.64 16 15 O -0.98 -40.33 16.24 -128.00 -2.08 -42.41 16 16 O -0.99 -44.74 15.89 -128.00 -2.03 -46.77 16 17 N -0.96 -27.92 2.53 -494.70 -1.25 -29.17 16 18 C 0.12 2.55 5.19 85.63 0.44 2.99 16 19 C 0.46 10.61 6.81 71.23 0.49 11.09 16 20 O -0.54 -16.39 15.81 21.96 0.35 -16.04 16 21 O -0.51 -7.77 13.42 -51.45 -0.69 -8.46 16 22 C 0.10 2.77 4.29 45.51 0.20 2.96 16 23 C -0.13 -2.78 6.44 31.18 0.20 -2.58 16 24 C -0.13 -2.09 8.09 31.18 0.25 -1.84 16 25 C -0.15 -3.06 7.64 31.12 0.24 -2.82 16 26 C -0.14 -6.89 9.26 22.73 0.21 -6.68 16 27 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 28 H 0.11 5.75 6.18 -2.91 -0.02 5.73 16 29 H 0.13 4.61 8.06 -2.91 -0.02 4.58 16 30 H 0.13 4.64 7.60 -2.91 -0.02 4.62 16 31 H 0.16 2.11 6.55 -2.39 -0.02 2.09 16 32 H 0.14 2.68 7.61 -2.39 -0.02 2.66 16 33 H 0.43 3.18 9.10 -74.06 -0.67 2.51 16 34 H 0.11 3.28 7.08 -2.39 -0.02 3.27 16 35 H 0.09 1.65 5.46 -2.39 -0.01 1.63 16 36 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.10 1.75 6.76 -2.39 -0.02 1.74 16 41 H 0.11 5.07 7.60 -2.91 -0.02 5.05 16 Total: -1.00 -72.16 353.89 -0.02 -72.19 By element: Atomic # 1 Polarization: 29.31 SS G_CDS: 0.41 Total: 29.72 kcal Atomic # 6 Polarization: -64.48 SS G_CDS: 3.33 Total: -61.16 kcal Atomic # 7 Polarization: -69.22 SS G_CDS: -1.01 Total: -70.23 kcal Atomic # 8 Polarization: -109.23 SS G_CDS: -4.46 Total: -113.68 kcal Atomic # 14 Polarization: 36.50 SS G_CDS: 2.03 Total: 38.53 kcal Atomic # 16 Polarization: 104.96 SS G_CDS: -0.32 Total: 104.64 kcal Total: -72.16 -0.02 -72.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593943039.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.055 kcal (2) G-P(sol) polarization free energy of solvation -72.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds