Wall clock time and date at job start Tue Mar 31 2020 21:54:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47144 * 269.99815 * 3 2 1 5 5 H 1.48497 * 109.46961 * 30.00462 * 3 2 1 6 6 H 1.48497 * 109.46585 * 150.00280 * 3 2 1 7 7 C 1.37868 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00013 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47338 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47080 * 180.02562 * 10 9 7 12 12 O 1.42094 * 110.54684 * 68.37242 * 11 10 9 13 13 O 1.42102 * 110.54270 * 291.62218 * 11 10 9 14 14 N 1.65603 * 104.44944 * 180.02562 * 11 10 9 15 15 C 1.46917 * 120.54144 * 97.66997 * 14 11 10 16 16 C 1.53433 * 107.79709 * 135.36155 * 15 14 11 17 17 C 1.52863 * 108.84311 * 63.19909 * 16 15 14 18 18 H 1.09000 * 109.30068 * 68.98549 * 17 16 15 19 19 C 1.50702 * 109.29965 * 188.35857 * 17 16 15 20 20 O 1.20834 * 119.99773 * 1.03966 * 19 17 16 21 21 O 1.34223 * 119.99965 * 181.03684 * 19 17 16 22 22 C 1.50586 * 110.48792 * 308.67141 * 17 16 15 23 23 C 1.38501 * 118.93255 * 200.48438 * 22 17 16 24 24 C 1.38119 * 120.30997 * 180.18078 * 23 22 17 25 25 C 1.38314 * 120.16283 * 0.10490 * 24 23 22 26 26 C 1.38027 * 119.90890 * 0.15677 * 25 24 23 27 27 C 1.38617 * 121.50555 * 20.62671 * 22 17 16 28 28 H 0.97006 * 120.00049 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46951 * 59.99922 * 9 7 2 30 30 H 1.09001 * 109.46835 * 300.00231 * 9 7 2 31 31 H 1.08998 * 109.46923 * 59.99984 * 10 9 7 32 32 H 1.09001 * 109.47076 * 299.99753 * 10 9 7 33 33 H 1.08998 * 109.79900 * 15.78900 * 15 14 11 34 34 H 1.09003 * 109.84470 * 254.96615 * 15 14 11 35 35 H 1.09002 * 109.57483 * 303.39392 * 16 15 14 36 36 H 1.08994 * 109.68377 * 183.06856 * 16 15 14 37 37 H 0.96708 * 116.99617 * 180.02562 * 21 19 17 38 38 H 1.07997 * 119.84511 * 0.20558 * 23 22 17 39 39 H 1.07997 * 119.92586 * 180.08467 * 24 23 22 40 40 H 1.07992 * 120.04774 * 179.87388 * 25 24 23 41 41 H 1.08000 * 119.98645 * 179.72277 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 16 1.3381 -5.2330 -0.0013 12 8 0.6644 -5.4194 -1.2385 13 8 0.6637 -5.4200 1.2354 14 7 2.5202 -6.3928 -0.0005 15 6 2.9340 -7.0362 1.2538 16 6 3.0426 -8.5444 0.9935 17 6 4.1383 -8.7888 -0.0440 18 1 5.1086 -8.5579 0.3956 19 6 4.1165 -10.2371 -0.4598 20 8 3.2956 -10.9885 0.0110 21 8 5.0089 -10.6924 -1.3531 22 6 3.9209 -7.9200 -1.2547 23 6 4.5188 -8.2773 -2.4518 24 6 4.3415 -7.4991 -3.5791 25 6 3.5664 -6.3551 -3.5189 26 6 2.9714 -5.9888 -2.3287 27 6 3.1415 -6.7753 -1.1944 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5566 -0.8903 30 1 0.6246 -2.5570 0.8897 31 1 2.8718 -3.6044 0.8894 32 1 2.8718 -3.6044 -0.8905 33 1 2.1903 -6.8479 2.0281 34 1 3.9016 -6.6453 1.5686 35 1 2.0914 -8.9192 0.6153 36 1 3.2957 -9.0596 1.9201 37 1 4.9553 -11.6288 -1.5889 38 1 5.1261 -9.1688 -2.5042 39 1 4.8095 -7.7843 -4.5097 40 1 3.4308 -5.7469 -4.4009 41 1 2.3696 -5.0933 -2.2792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594699721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:19 Heat of formation + Delta-G solvation = -133.902091 kcal Electronic energy + Delta-G solvation = -27853.891117 eV Core-core repulsion = 23825.801927 eV Total energy + Delta-G solvation = -4028.089191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23803 -39.70675 -37.23395 -36.74220 -36.20549 -35.67404 -34.09935 -33.97276 -31.27862 -30.67359 -29.82122 -26.69977 -25.68453 -23.78977 -23.16841 -22.21566 -21.44729 -20.08284 -19.03271 -18.50716 -17.79281 -17.17533 -16.93992 -16.66893 -16.58407 -15.71165 -15.48646 -15.30821 -14.79491 -14.58110 -14.22746 -13.92275 -13.77665 -13.54621 -13.40143 -13.30170 -12.83675 -12.57296 -12.30010 -12.13488 -11.86613 -11.80283 -11.76863 -11.69888 -11.45452 -11.14375 -11.11871 -11.06409 -10.96189 -10.68177 -10.59267 -10.45568 -10.39303 -9.78415 -9.26785 -8.87252 -8.55820 -8.04015 -6.17885 -4.24111 0.44787 1.19177 1.36638 1.89339 2.64249 2.68553 3.23138 3.29643 3.32161 3.67875 4.08623 4.18629 4.23179 4.32431 4.35344 4.55655 4.68136 4.87738 4.97832 5.02109 5.10931 5.17286 5.20764 5.30149 5.44241 5.46318 5.50366 5.59739 5.63094 5.82653 5.88526 5.96201 6.14042 6.20807 6.35356 6.40854 6.49772 6.57108 6.96893 7.20544 7.25577 7.55009 7.74823 8.09696 8.79172 9.41212 10.93038 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.003240 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.901273 B = 8639.858096 C = 9297.654931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.029 3.971 10 C -0.583 4.583 11 S 2.575 3.425 12 O -0.947 6.947 13 O -0.952 6.952 14 N -0.945 5.945 15 C 0.105 3.895 16 C -0.119 4.119 17 C -0.029 4.029 18 H 0.121 0.879 19 C 0.492 3.508 20 O -0.509 6.509 21 O -0.511 6.511 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.153 4.153 25 C -0.072 4.072 26 C -0.171 4.171 27 C 0.205 3.795 28 H 0.266 0.734 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.408 0.592 38 H 0.147 0.853 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.672 -19.024 -2.656 23.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.011 4.011 10 C -0.718 4.718 11 S 2.676 3.324 12 O -0.938 6.938 13 O -0.943 6.943 14 N -0.767 5.767 15 C -0.019 4.019 16 C -0.157 4.157 17 C -0.048 4.048 18 H 0.138 0.862 19 C 0.334 3.666 20 O -0.396 6.396 21 O -0.324 6.324 22 C -0.138 4.138 23 C -0.109 4.109 24 C -0.172 4.172 25 C -0.090 4.090 26 C -0.192 4.192 27 C 0.108 3.892 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.112 0.888 37 H 0.267 0.733 38 H 0.164 0.836 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.292 -18.905 -2.284 22.139 hybrid contribution 0.952 0.603 -0.179 1.140 sum 12.244 -18.303 -2.463 22.158 Atomic orbital electron populations 1.69952 1.06130 1.27322 1.49332 1.25064 0.94984 0.99579 0.94784 0.86450 0.79709 0.82736 0.78302 1.20396 1.20975 1.19710 1.20968 0.93104 0.89542 1.52473 0.91914 1.19002 0.92605 0.90388 0.99057 1.30504 1.13720 1.16818 1.10709 1.06442 0.74756 0.76758 0.74472 1.93583 1.71054 1.84767 1.44361 1.93543 1.70549 1.85165 1.44995 1.56269 1.55055 1.54264 1.11071 1.21814 1.02657 0.92138 0.85287 1.21770 0.99159 0.96115 0.98704 1.19813 1.02930 0.86603 0.95440 0.86168 1.23242 0.77276 0.90921 0.75193 1.90739 1.37062 1.58493 1.53290 1.84553 1.56177 1.33936 1.57708 1.18814 1.04141 0.95904 0.94985 1.21463 0.97971 1.00094 0.91353 1.21029 1.01429 0.96212 0.98546 1.21019 0.94801 0.96174 0.97028 1.21361 1.03515 1.01720 0.92587 1.17218 0.93205 0.93434 0.85321 0.92441 0.94682 0.94718 0.85724 0.85745 0.86605 0.89980 0.89518 0.88809 0.73295 0.83602 0.85803 0.85123 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.52 -14.03 9.11 -34.44 -0.31 -14.34 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 10 C -0.58 -10.84 5.92 37.16 0.22 -10.62 16 11 S 2.57 46.29 4.80 -107.50 -0.52 45.78 16 12 O -0.95 -19.39 15.06 -57.54 -0.87 -20.26 16 13 O -0.95 -19.05 16.39 -57.54 -0.94 -19.99 16 14 N -0.95 -13.56 3.20 -58.09 -0.19 -13.75 16 15 C 0.11 1.17 6.46 -3.59 -0.02 1.15 16 16 C -0.12 -1.23 4.80 -26.58 -0.13 -1.35 16 17 C -0.03 -0.28 2.77 -93.05 -0.26 -0.54 16 18 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 19 C 0.49 4.79 7.38 36.01 0.27 5.06 16 20 O -0.51 -6.48 16.58 -18.76 -0.31 -6.79 16 21 O -0.51 -3.34 10.46 -39.24 -0.41 -3.75 16 22 C -0.13 -1.59 5.46 -104.44 -0.57 -2.16 16 23 C -0.09 -0.95 9.04 -39.53 -0.36 -1.31 16 24 C -0.15 -1.60 10.04 -39.60 -0.40 -1.99 16 25 C -0.07 -0.87 10.05 -39.63 -0.40 -1.27 16 26 C -0.17 -2.50 8.32 -39.35 -0.33 -2.83 16 27 C 0.21 2.90 6.22 -83.72 -0.52 2.38 16 28 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 32 H 0.12 2.09 7.08 -51.92 -0.37 1.72 16 33 H 0.12 1.32 6.69 -51.93 -0.35 0.97 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 1.08 7.81 -51.93 -0.41 0.68 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.41 1.02 9.10 45.56 0.41 1.43 16 38 H 0.15 1.24 5.14 -52.49 -0.27 0.97 16 39 H 0.12 0.97 8.06 -52.49 -0.42 0.54 16 40 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 41 H 0.14 2.23 4.59 -52.49 -0.24 1.99 16 LS Contribution 348.09 15.07 5.25 5.25 Total: -1.00 -36.00 348.09 -9.46 -45.46 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -4.14 Total: 3.22 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -3.04 Total: -25.72 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.55 Total: -38.95 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -2.53 Total: -50.79 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 46.29 SS G_CDS: -0.52 Total: 45.78 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.00 -9.46 -45.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594699721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.445 kcal (2) G-P(sol) polarization free energy of solvation -36.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds