Wall clock time and date at job start Tue Mar 31 2020 21:54:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47144 * 269.99815 * 3 2 1 5 5 H 1.48497 * 109.46961 * 30.00462 * 3 2 1 6 6 H 1.48497 * 109.46585 * 150.00280 * 3 2 1 7 7 C 1.37868 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00013 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00443 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47338 * 180.02562 * 9 7 2 11 11 S 1.81400 * 109.47080 * 180.02562 * 10 9 7 12 12 O 1.42094 * 110.54684 * 68.37242 * 11 10 9 13 13 O 1.42102 * 110.54270 * 291.62218 * 11 10 9 14 14 N 1.65603 * 104.44944 * 180.02562 * 11 10 9 15 15 C 1.46917 * 120.54144 * 97.66997 * 14 11 10 16 16 C 1.53433 * 107.79709 * 135.36155 * 15 14 11 17 17 C 1.52863 * 108.84311 * 63.19909 * 16 15 14 18 18 H 1.09000 * 109.30068 * 68.98549 * 17 16 15 19 19 C 1.50702 * 109.29965 * 188.35857 * 17 16 15 20 20 O 1.20834 * 119.99773 * 1.03966 * 19 17 16 21 21 O 1.34223 * 119.99965 * 181.03684 * 19 17 16 22 22 C 1.50586 * 110.48792 * 308.67141 * 17 16 15 23 23 C 1.38501 * 118.93255 * 200.48438 * 22 17 16 24 24 C 1.38119 * 120.30997 * 180.18078 * 23 22 17 25 25 C 1.38314 * 120.16283 * 0.10490 * 24 23 22 26 26 C 1.38027 * 119.90890 * 0.15677 * 25 24 23 27 27 C 1.38617 * 121.50555 * 20.62671 * 22 17 16 28 28 H 0.97006 * 120.00049 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.46951 * 59.99922 * 9 7 2 30 30 H 1.09001 * 109.46835 * 300.00231 * 9 7 2 31 31 H 1.08998 * 109.46923 * 59.99984 * 10 9 7 32 32 H 1.09001 * 109.47076 * 299.99753 * 10 9 7 33 33 H 1.08998 * 109.79900 * 15.78900 * 15 14 11 34 34 H 1.09003 * 109.84470 * 254.96615 * 15 14 11 35 35 H 1.09002 * 109.57483 * 303.39392 * 16 15 14 36 36 H 1.08994 * 109.68377 * 183.06856 * 16 15 14 37 37 H 0.96708 * 116.99617 * 180.02562 * 21 19 17 38 38 H 1.07997 * 119.84511 * 0.20558 * 23 22 17 39 39 H 1.07997 * 119.92586 * 180.08467 * 24 23 22 40 40 H 1.07992 * 120.04774 * 179.87388 * 25 24 23 41 41 H 1.08000 * 119.98645 * 179.72277 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0005 11 16 1.3381 -5.2330 -0.0013 12 8 0.6644 -5.4194 -1.2385 13 8 0.6637 -5.4200 1.2354 14 7 2.5202 -6.3928 -0.0005 15 6 2.9340 -7.0362 1.2538 16 6 3.0426 -8.5444 0.9935 17 6 4.1383 -8.7888 -0.0440 18 1 5.1086 -8.5579 0.3956 19 6 4.1165 -10.2371 -0.4598 20 8 3.2956 -10.9885 0.0110 21 8 5.0089 -10.6924 -1.3531 22 6 3.9209 -7.9200 -1.2547 23 6 4.5188 -8.2773 -2.4518 24 6 4.3415 -7.4991 -3.5791 25 6 3.5664 -6.3551 -3.5189 26 6 2.9714 -5.9888 -2.3287 27 6 3.1415 -6.7753 -1.1944 28 1 -0.4850 0.8401 0.0004 29 1 0.6239 -2.5566 -0.8903 30 1 0.6246 -2.5570 0.8897 31 1 2.8718 -3.6044 0.8894 32 1 2.8718 -3.6044 -0.8905 33 1 2.1903 -6.8479 2.0281 34 1 3.9016 -6.6453 1.5686 35 1 2.0914 -8.9192 0.6153 36 1 3.2957 -9.0596 1.9201 37 1 4.9553 -11.6288 -1.5889 38 1 5.1261 -9.1688 -2.5042 39 1 4.8095 -7.7843 -4.5097 40 1 3.4308 -5.7469 -4.4009 41 1 2.3696 -5.0933 -2.2792 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594699721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:18 Heat of formation + Delta-G solvation = -159.490169 kcal Electronic energy + Delta-G solvation = -27855.000700 eV Core-core repulsion = 23825.801927 eV Total energy + Delta-G solvation = -4029.198773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.03788 -40.55175 -38.58823 -37.70186 -37.23498 -36.97519 -35.95291 -34.99574 -33.20463 -31.55482 -30.74426 -27.79488 -27.42285 -24.65789 -24.22333 -23.51222 -22.76021 -21.01387 -20.12400 -19.42207 -19.11577 -18.43662 -18.10385 -17.71347 -17.52585 -17.24154 -16.76069 -16.55740 -16.22718 -15.70611 -15.38923 -15.09342 -14.86177 -14.53682 -14.47829 -14.29043 -14.18229 -13.86928 -13.77650 -13.44171 -13.21742 -13.15956 -12.96392 -12.94062 -12.84682 -12.58635 -12.32398 -12.26846 -12.16189 -11.99358 -11.82257 -11.77306 -11.58535 -11.47059 -11.04385 -10.66213 -9.77540 -9.02725 -8.27571 -6.42033 -0.99577 0.29960 0.42445 1.16664 1.40213 1.41404 1.42974 1.54256 2.02714 2.37072 2.58327 2.86401 2.94926 3.06225 3.30866 3.42001 3.64437 3.83039 3.93055 3.97190 4.10351 4.18558 4.21152 4.34239 4.48777 4.53101 4.61891 4.62919 4.67243 4.70942 4.95975 5.06879 5.09272 5.20363 5.21374 5.31345 5.48615 5.57762 5.61797 5.65351 5.66315 6.02463 6.07184 6.71126 6.98575 7.28501 8.84669 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019509 B = 0.003240 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.901273 B = 8639.858096 C = 9297.654931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.539 4.539 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.579 4.579 11 S 2.598 3.402 12 O -0.980 6.980 13 O -0.978 6.978 14 N -0.940 5.940 15 C 0.094 3.906 16 C -0.116 4.116 17 C -0.031 4.031 18 H 0.156 0.844 19 C 0.500 3.500 20 O -0.544 6.544 21 O -0.499 6.499 22 C -0.132 4.132 23 C -0.087 4.087 24 C -0.144 4.144 25 C -0.082 4.082 26 C -0.202 4.202 27 C 0.180 3.820 28 H 0.268 0.732 29 H 0.008 0.992 30 H 0.009 0.991 31 H 0.149 0.851 32 H 0.142 0.858 33 H 0.109 0.891 34 H 0.118 0.882 35 H 0.057 0.943 36 H 0.120 0.880 37 H 0.428 0.572 38 H 0.172 0.828 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.363 -20.341 -3.019 26.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.016 4.016 10 C -0.712 4.712 11 S 2.699 3.301 12 O -0.970 6.970 13 O -0.968 6.968 14 N -0.764 5.764 15 C -0.029 4.029 16 C -0.155 4.155 17 C -0.049 4.049 18 H 0.174 0.826 19 C 0.343 3.657 20 O -0.435 6.435 21 O -0.314 6.314 22 C -0.137 4.137 23 C -0.105 4.105 24 C -0.163 4.163 25 C -0.101 4.101 26 C -0.223 4.223 27 C 0.084 3.916 28 H 0.077 0.923 29 H 0.026 0.974 30 H 0.027 0.973 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.127 0.873 34 H 0.136 0.864 35 H 0.076 0.924 36 H 0.138 0.862 37 H 0.291 0.709 38 H 0.189 0.811 39 H 0.174 0.826 40 H 0.162 0.838 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.009 -20.232 -2.666 25.332 hybrid contribution -0.138 0.859 -0.145 0.882 sum 14.871 -19.373 -2.811 24.584 Atomic orbital electron populations 1.70101 1.08085 1.28408 1.50709 1.26110 0.95848 1.03874 0.94273 0.85303 0.78674 0.77565 0.78677 1.19572 1.20861 1.18040 1.21471 0.94010 0.90515 1.51760 0.90487 1.18836 0.93447 0.92788 0.96578 1.30356 1.12741 1.15294 1.12782 1.05390 0.74794 0.76767 0.73159 1.93536 1.72567 1.85258 1.45637 1.93500 1.71769 1.85642 1.45930 1.55812 1.54681 1.53286 1.12655 1.22188 1.04147 0.92842 0.83687 1.21751 0.98301 0.95289 1.00162 1.19900 1.04226 0.86345 0.94460 0.82640 1.23139 0.76885 0.90611 0.75018 1.90743 1.38563 1.59383 1.54764 1.84459 1.54755 1.35803 1.56365 1.19076 1.03075 0.95061 0.96482 1.21827 0.97442 1.00608 0.90644 1.21421 1.00059 0.94917 0.99932 1.21283 0.94917 0.97258 0.96615 1.21403 1.04795 1.01877 0.94254 1.17403 0.94628 0.94803 0.84796 0.92333 0.97391 0.97262 0.83308 0.84017 0.87328 0.86432 0.92379 0.86221 0.70900 0.81063 0.82574 0.83803 0.86439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.33 13.29 21.44 0.28 -56.04 16 2 C 0.00 -0.14 5.46 84.65 0.46 0.33 16 3 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 4 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 7 C -0.54 -29.46 9.11 25.60 0.23 -29.23 16 8 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.17 4.98 29.85 0.15 1.32 16 10 C -0.58 -22.03 5.92 71.98 0.43 -21.61 16 11 S 2.60 97.37 4.80 -56.49 -0.27 97.10 16 12 O -0.98 -42.59 15.06 -127.65 -1.92 -44.52 16 13 O -0.98 -40.82 16.39 -127.65 -2.09 -42.91 16 14 N -0.94 -26.81 3.20 -337.69 -1.08 -27.89 16 15 C 0.09 1.98 6.46 86.45 0.56 2.53 16 16 C -0.12 -2.20 4.80 30.69 0.15 -2.05 16 17 C -0.03 -0.50 2.77 -12.37 -0.03 -0.53 16 18 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 19 C 0.50 8.23 7.38 71.24 0.53 8.75 16 20 O -0.54 -12.86 16.58 21.94 0.36 -12.50 16 21 O -0.50 -4.44 10.46 -51.35 -0.54 -4.98 16 22 C -0.13 -2.81 5.46 -19.75 -0.11 -2.92 16 23 C -0.09 -1.52 9.04 22.30 0.20 -1.32 16 24 C -0.14 -2.57 10.04 22.26 0.22 -2.34 16 25 C -0.08 -1.90 10.05 22.24 0.22 -1.68 16 26 C -0.20 -5.96 8.32 22.42 0.19 -5.77 16 27 C 0.18 4.95 6.22 38.14 0.24 5.19 16 28 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.15 4.84 8.14 -2.39 -0.02 4.82 16 32 H 0.14 4.85 7.08 -2.39 -0.02 4.83 16 33 H 0.11 2.44 6.69 -2.39 -0.02 2.42 16 34 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.06 1.44 7.81 -2.39 -0.02 1.42 16 36 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.43 0.40 9.10 -74.05 -0.67 -0.27 16 38 H 0.17 2.07 5.14 -2.91 -0.01 2.05 16 39 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.12 3.95 4.59 -2.91 -0.01 3.93 16 Total: -1.00 -81.60 348.09 0.61 -80.98 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: 0.41 Total: 15.36 kcal Atomic # 6 Polarization: -52.77 SS G_CDS: 3.43 Total: -49.33 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -0.79 Total: -83.93 kcal Atomic # 8 Polarization: -100.71 SS G_CDS: -4.19 Total: -104.90 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 97.37 SS G_CDS: -0.27 Total: 97.10 kcal Total: -81.60 0.61 -80.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594699721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.506 kcal (2) G-P(sol) polarization free energy of solvation -81.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds