Wall clock time and date at job start Tue Mar 31 2020 21:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99936 * 2 1 4 4 H 1.48508 * 109.47198 * 240.00094 * 3 2 1 5 5 H 1.48496 * 109.47520 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47189 * 120.00485 * 3 2 1 7 7 C 1.37879 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99704 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46950 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54165 * 68.37622 * 11 10 9 13 13 O 1.42094 * 110.54180 * 291.62611 * 11 10 9 14 14 N 1.65597 * 104.44755 * 179.97438 * 11 10 9 15 15 C 1.46928 * 120.54079 * 262.24319 * 14 11 10 16 16 C 1.53440 * 107.78843 * 224.66448 * 15 14 11 17 17 C 1.52854 * 108.83905 * 296.76973 * 16 15 14 18 18 H 1.08998 * 109.30006 * 291.20824 * 17 16 15 19 19 C 1.50690 * 109.30080 * 171.62604 * 17 16 15 20 20 O 1.20829 * 119.99915 * 359.97438 * 19 17 16 21 21 O 1.34231 * 120.00236 * 180.27628 * 19 17 16 22 22 C 1.50595 * 110.48840 * 51.31170 * 17 16 15 23 23 C 1.38506 * 118.92381 * 159.53375 * 22 17 16 24 24 C 1.38126 * 120.30449 * 179.87899 * 23 22 17 25 25 C 1.38306 * 120.16489 * 359.93668 * 24 23 22 26 26 C 1.38029 * 119.90979 * 0.11862 * 25 24 23 27 27 C 1.38610 * 121.51103 * 339.49217 * 22 17 16 28 28 H 0.97001 * 120.00151 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47079 * 60.00265 * 9 7 2 30 30 H 1.09000 * 109.47191 * 299.99875 * 9 7 2 31 31 H 1.09000 * 109.47000 * 60.00233 * 10 9 7 32 32 H 1.08997 * 109.47587 * 300.00002 * 10 9 7 33 33 H 1.08996 * 109.79377 * 105.09743 * 15 14 11 34 34 H 1.08995 * 109.79762 * 344.24017 * 15 14 11 35 35 H 1.08992 * 109.57414 * 176.96154 * 16 15 14 36 36 H 1.09000 * 109.57132 * 56.57797 * 16 15 14 37 37 H 0.96703 * 117.00265 * 179.72443 * 21 19 17 38 38 H 1.07993 * 119.84856 * 359.85287 * 23 22 17 39 39 H 1.08003 * 119.91667 * 179.97438 * 24 23 22 40 40 H 1.07991 * 120.05156 * 180.11528 * 25 24 23 41 41 H 1.07993 * 119.98298 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2331 -0.0011 12 8 0.6629 -5.4195 -1.2373 13 8 0.6656 -5.4199 1.2366 14 7 2.5204 -6.3927 -0.0033 15 6 2.9319 -7.0370 -1.2580 16 6 3.0404 -8.5451 -0.9970 17 6 4.1381 -8.7891 0.0383 18 1 5.1073 -8.5557 -0.4024 19 6 4.1164 -10.2370 0.4555 20 8 3.3059 -10.9924 -0.0264 21 8 4.9936 -10.6861 1.3669 22 6 3.9240 -7.9191 1.2487 23 6 4.5247 -8.2756 2.4447 24 6 4.3495 -7.4969 3.5720 25 6 3.5730 -6.3539 3.5133 26 6 2.9698 -5.9919 2.3258 27 6 3.1432 -6.7753 1.1898 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8725 -3.6047 0.8877 32 1 2.8712 -3.6040 -0.8922 33 1 3.8994 -6.6465 -1.5734 34 1 2.1871 -6.8488 -2.0312 35 1 3.2923 -9.0591 -1.9245 36 1 2.0898 -8.9191 -0.6165 37 1 4.9384 -11.6216 1.6057 38 1 5.1326 -9.1667 2.4962 39 1 4.8205 -7.7810 4.5015 40 1 3.4388 -5.7454 4.3953 41 1 2.3629 -5.0998 2.2787 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594699723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:22 Heat of formation + Delta-G solvation = -133.447535 kcal Electronic energy + Delta-G solvation = -27856.250514 eV Core-core repulsion = 23828.181034 eV Total energy + Delta-G solvation = -4028.069480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.23921 -39.70481 -37.23586 -36.74598 -36.20228 -35.67511 -34.09797 -33.97152 -31.27747 -30.67152 -29.81668 -26.69752 -25.68212 -23.78815 -23.16593 -22.21358 -21.44672 -20.08528 -19.03632 -18.50604 -17.78988 -17.17450 -16.93651 -16.66884 -16.58830 -15.71209 -15.48193 -15.31106 -14.79744 -14.58489 -14.22085 -13.91898 -13.78410 -13.54341 -13.39446 -13.30094 -12.83644 -12.56832 -12.29778 -12.13464 -11.86623 -11.80370 -11.76629 -11.69679 -11.45284 -11.13331 -11.11138 -11.06655 -10.95877 -10.68293 -10.59529 -10.44382 -10.40713 -9.78298 -9.27618 -8.86914 -8.55373 -8.03775 -6.17657 -4.23980 0.44852 1.19420 1.36983 1.89294 2.64365 2.68573 3.24305 3.29463 3.31045 3.68147 4.08635 4.18533 4.23297 4.32503 4.35360 4.55758 4.68075 4.87622 4.98357 5.02351 5.11116 5.17354 5.20871 5.30392 5.44512 5.47017 5.50430 5.59871 5.63366 5.82849 5.88430 5.96685 6.14148 6.21153 6.35447 6.41243 6.50088 6.57473 6.97226 7.20507 7.25694 7.55033 7.74758 8.09833 8.79040 9.41230 10.93239 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.003241 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.928085 B = 8636.618420 C = 9297.016651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.901 3.099 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.062 0.938 9 C 0.029 3.971 10 C -0.583 4.583 11 S 2.575 3.425 12 O -0.952 6.952 13 O -0.947 6.947 14 N -0.945 5.945 15 C 0.105 3.895 16 C -0.118 4.118 17 C -0.029 4.029 18 H 0.121 0.879 19 C 0.492 3.508 20 O -0.509 6.509 21 O -0.511 6.511 22 C -0.134 4.134 23 C -0.091 4.091 24 C -0.153 4.153 25 C -0.072 4.072 26 C -0.171 4.171 27 C 0.205 3.795 28 H 0.266 0.734 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.407 0.593 38 H 0.148 0.852 39 H 0.124 0.876 40 H 0.131 0.869 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.647 -19.017 2.665 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.144 4.144 3 Si 0.728 3.272 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.562 4.562 8 H 0.080 0.920 9 C -0.010 4.010 10 C -0.717 4.717 11 S 2.676 3.324 12 O -0.943 6.943 13 O -0.938 6.938 14 N -0.767 5.767 15 C -0.019 4.019 16 C -0.157 4.157 17 C -0.048 4.048 18 H 0.139 0.861 19 C 0.334 3.666 20 O -0.396 6.396 21 O -0.323 6.323 22 C -0.139 4.139 23 C -0.109 4.109 24 C -0.172 4.172 25 C -0.090 4.090 26 C -0.192 4.192 27 C 0.108 3.892 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.100 0.900 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.105 0.895 37 H 0.267 0.733 38 H 0.165 0.835 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 11.266 -18.897 2.294 22.119 hybrid contribution 0.963 0.603 0.171 1.149 sum 12.228 -18.294 2.465 22.142 Atomic orbital electron populations 1.69941 1.06132 1.27445 1.49231 1.25064 0.94984 0.99568 0.94770 0.86510 0.79492 0.82399 0.78771 1.20035 1.21039 1.19999 1.20935 0.93070 0.89558 1.52613 0.91961 1.18995 0.92597 0.90370 0.99049 1.30502 1.13720 1.16814 1.10706 1.06438 0.74754 0.76762 0.74467 1.93542 1.70514 1.85174 1.45028 1.93582 1.71109 1.84765 1.44319 1.56272 1.55060 1.54235 1.11109 1.21825 1.02673 0.92133 0.85274 1.21770 0.99105 0.96118 0.98735 1.19813 1.02932 0.86605 0.95456 0.86146 1.23232 0.77112 0.90918 0.75342 1.90737 1.37155 1.58186 1.53509 1.84554 1.57163 1.34076 1.56554 1.18823 1.04143 0.95903 0.95025 1.21488 0.97961 1.00089 0.91337 1.21031 1.01458 0.96198 0.98551 1.21019 0.94775 0.96185 0.97057 1.21370 1.03447 1.01825 0.92588 1.17219 0.93176 0.93475 0.85320 0.92378 0.94726 0.94687 0.85745 0.85728 0.89979 0.86597 0.88795 0.89534 0.73315 0.83517 0.85813 0.85134 0.84069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.79 29.54 -169.99 -5.02 15.76 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.52 -14.06 9.11 -34.44 -0.31 -14.37 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.58 -10.85 5.92 37.16 0.22 -10.63 16 11 S 2.57 46.30 4.81 -107.50 -0.52 45.78 16 12 O -0.95 -19.05 16.39 -57.54 -0.94 -19.99 16 13 O -0.95 -19.39 15.04 -57.54 -0.87 -20.26 16 14 N -0.95 -13.56 3.20 -58.08 -0.19 -13.75 16 15 C 0.10 1.17 6.46 -3.58 -0.02 1.15 16 16 C -0.12 -1.22 4.79 -26.58 -0.13 -1.35 16 17 C -0.03 -0.28 2.77 -93.05 -0.26 -0.54 16 18 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 19 C 0.49 4.79 7.42 36.00 0.27 5.06 16 20 O -0.51 -6.47 16.59 -18.75 -0.31 -6.78 16 21 O -0.51 -3.33 10.38 -39.26 -0.41 -3.74 16 22 C -0.13 -1.59 5.46 -104.44 -0.57 -2.16 16 23 C -0.09 -0.95 9.02 -39.52 -0.36 -1.31 16 24 C -0.15 -1.60 10.04 -39.60 -0.40 -2.00 16 25 C -0.07 -0.87 10.05 -39.63 -0.40 -1.27 16 26 C -0.17 -2.51 8.32 -39.35 -0.33 -2.84 16 27 C 0.21 2.90 6.22 -83.72 -0.52 2.38 16 28 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.12 2.09 7.10 -51.92 -0.37 1.72 16 32 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.12 1.32 6.69 -51.93 -0.35 0.97 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.08 7.83 -51.93 -0.41 0.67 16 37 H 0.41 1.01 9.10 45.56 0.41 1.43 16 38 H 0.15 1.24 5.11 -52.49 -0.27 0.97 16 39 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 40 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 41 H 0.14 2.24 4.60 -52.49 -0.24 2.00 16 LS Contribution 348.03 15.07 5.24 5.24 Total: -1.00 -35.98 348.03 -9.45 -45.43 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -4.14 Total: 3.28 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: -3.04 Total: -25.76 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.55 Total: -38.97 kcal Atomic # 8 Polarization: -48.24 SS G_CDS: -2.53 Total: -50.77 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 46.30 SS G_CDS: -0.52 Total: 45.78 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.98 -9.45 -45.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594699723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.020 kcal (2) G-P(sol) polarization free energy of solvation -35.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds