Wall clock time and date at job start Tue Mar 31 2020 21:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 119.99936 * 2 1 4 4 H 1.48508 * 109.47198 * 240.00094 * 3 2 1 5 5 H 1.48496 * 109.47520 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47189 * 120.00485 * 3 2 1 7 7 C 1.37879 * 119.99709 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99704 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00172 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46950 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46999 * 179.97438 * 10 9 7 12 12 O 1.42096 * 110.54165 * 68.37622 * 11 10 9 13 13 O 1.42094 * 110.54180 * 291.62611 * 11 10 9 14 14 N 1.65597 * 104.44755 * 179.97438 * 11 10 9 15 15 C 1.46928 * 120.54079 * 262.24319 * 14 11 10 16 16 C 1.53440 * 107.78843 * 224.66448 * 15 14 11 17 17 C 1.52854 * 108.83905 * 296.76973 * 16 15 14 18 18 H 1.08998 * 109.30006 * 291.20824 * 17 16 15 19 19 C 1.50690 * 109.30080 * 171.62604 * 17 16 15 20 20 O 1.20829 * 119.99915 * 359.97438 * 19 17 16 21 21 O 1.34231 * 120.00236 * 180.27628 * 19 17 16 22 22 C 1.50595 * 110.48840 * 51.31170 * 17 16 15 23 23 C 1.38506 * 118.92381 * 159.53375 * 22 17 16 24 24 C 1.38126 * 120.30449 * 179.87899 * 23 22 17 25 25 C 1.38306 * 120.16489 * 359.93668 * 24 23 22 26 26 C 1.38029 * 119.90979 * 0.11862 * 25 24 23 27 27 C 1.38610 * 121.51103 * 339.49217 * 22 17 16 28 28 H 0.97001 * 120.00151 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47079 * 60.00265 * 9 7 2 30 30 H 1.09000 * 109.47191 * 299.99875 * 9 7 2 31 31 H 1.09000 * 109.47000 * 60.00233 * 10 9 7 32 32 H 1.08997 * 109.47587 * 300.00002 * 10 9 7 33 33 H 1.08996 * 109.79377 * 105.09743 * 15 14 11 34 34 H 1.08995 * 109.79762 * 344.24017 * 15 14 11 35 35 H 1.08992 * 109.57414 * 176.96154 * 16 15 14 36 36 H 1.09000 * 109.57132 * 56.57797 * 16 15 14 37 37 H 0.96703 * 117.00265 * 179.72443 * 21 19 17 38 38 H 1.07993 * 119.84856 * 359.85287 * 23 22 17 39 39 H 1.08003 * 119.91667 * 179.97438 * 24 23 22 40 40 H 1.07991 * 120.05156 * 180.11528 * 25 24 23 41 41 H 1.07993 * 119.98298 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 16 1.3382 -5.2331 -0.0011 12 8 0.6629 -5.4195 -1.2373 13 8 0.6656 -5.4199 1.2366 14 7 2.5204 -6.3927 -0.0033 15 6 2.9319 -7.0370 -1.2580 16 6 3.0404 -8.5451 -0.9970 17 6 4.1381 -8.7891 0.0383 18 1 5.1073 -8.5557 -0.4024 19 6 4.1164 -10.2370 0.4555 20 8 3.3059 -10.9924 -0.0264 21 8 4.9936 -10.6861 1.3669 22 6 3.9240 -7.9191 1.2487 23 6 4.5247 -8.2756 2.4447 24 6 4.3495 -7.4969 3.5720 25 6 3.5730 -6.3539 3.5133 26 6 2.9698 -5.9919 2.3258 27 6 3.1432 -6.7753 1.1898 28 1 -0.4850 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 2.8725 -3.6047 0.8877 32 1 2.8712 -3.6040 -0.8922 33 1 3.8994 -6.6465 -1.5734 34 1 2.1871 -6.8488 -2.0312 35 1 3.2923 -9.0591 -1.9245 36 1 2.0898 -8.9191 -0.6165 37 1 4.9384 -11.6216 1.6057 38 1 5.1326 -9.1667 2.4962 39 1 4.8205 -7.7810 4.5015 40 1 3.4388 -5.7454 4.3953 41 1 2.3629 -5.0998 2.2787 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594699723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:21 Heat of formation + Delta-G solvation = -159.014294 kcal Electronic energy + Delta-G solvation = -27857.359172 eV Core-core repulsion = 23828.181034 eV Total energy + Delta-G solvation = -4029.178137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03856 -40.55002 -38.59008 -37.70450 -37.23598 -36.97325 -35.95180 -34.99498 -33.20455 -31.55311 -30.74006 -27.79305 -27.42051 -24.65615 -24.22159 -23.50997 -22.75971 -21.01696 -20.12519 -19.42442 -19.11342 -18.43301 -18.09946 -17.71448 -17.53034 -17.24228 -16.75642 -16.56041 -16.23009 -15.71104 -15.38590 -15.09000 -14.85909 -14.54415 -14.47195 -14.28974 -14.17480 -13.86891 -13.77962 -13.44215 -13.21226 -13.16016 -12.95241 -12.92633 -12.85726 -12.58007 -12.31028 -12.27641 -12.18195 -11.99006 -11.82084 -11.76701 -11.58636 -11.47645 -11.04827 -10.65328 -9.77233 -9.02530 -8.27427 -6.42025 -0.99549 0.30187 0.42729 1.16679 1.40263 1.41340 1.44536 1.52870 2.02826 2.37182 2.58303 2.86573 2.95004 3.06203 3.30934 3.41777 3.64669 3.83050 3.93280 3.97186 4.10648 4.18541 4.21213 4.34306 4.48846 4.53305 4.62162 4.63097 4.67211 4.71489 4.96132 5.06922 5.09555 5.20360 5.21280 5.31719 5.48973 5.57869 5.62049 5.65486 5.66428 6.02468 6.07523 6.70909 6.98673 7.28440 8.84612 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.019508 B = 0.003241 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.928085 B = 8636.618420 C = 9297.016651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.002 4.002 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.263 1.263 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.023 3.977 10 C -0.579 4.579 11 S 2.598 3.402 12 O -0.978 6.978 13 O -0.980 6.980 14 N -0.940 5.940 15 C 0.094 3.906 16 C -0.116 4.116 17 C -0.031 4.031 18 H 0.157 0.843 19 C 0.500 3.500 20 O -0.544 6.544 21 O -0.499 6.499 22 C -0.133 4.133 23 C -0.087 4.087 24 C -0.145 4.145 25 C -0.082 4.082 26 C -0.202 4.202 27 C 0.180 3.820 28 H 0.268 0.732 29 H 0.009 0.991 30 H 0.008 0.992 31 H 0.142 0.858 32 H 0.149 0.851 33 H 0.118 0.882 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.057 0.943 37 H 0.428 0.572 38 H 0.173 0.827 39 H 0.157 0.843 40 H 0.144 0.856 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.343 -20.335 3.027 26.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.201 4.201 3 Si 0.797 3.203 4 H -0.187 1.187 5 H -0.210 1.210 6 H -0.187 1.187 7 C -0.579 4.579 8 H 0.095 0.905 9 C -0.016 4.016 10 C -0.712 4.712 11 S 2.699 3.301 12 O -0.968 6.968 13 O -0.970 6.970 14 N -0.764 5.764 15 C -0.029 4.029 16 C -0.155 4.155 17 C -0.049 4.049 18 H 0.174 0.826 19 C 0.344 3.656 20 O -0.434 6.434 21 O -0.314 6.314 22 C -0.137 4.137 23 C -0.105 4.105 24 C -0.164 4.164 25 C -0.101 4.101 26 C -0.224 4.224 27 C 0.084 3.916 28 H 0.077 0.923 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.160 0.840 32 H 0.167 0.833 33 H 0.136 0.864 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.076 0.924 37 H 0.291 0.709 38 H 0.190 0.810 39 H 0.174 0.826 40 H 0.162 0.838 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.988 -20.224 2.674 25.314 hybrid contribution -0.128 0.859 0.137 0.879 sum 14.860 -19.365 2.812 24.571 Atomic orbital electron populations 1.70094 1.08090 1.28487 1.50632 1.26112 0.95843 1.03870 0.94246 0.85360 0.78146 0.77203 0.79542 1.18664 1.21003 1.18712 1.21449 0.94015 0.90533 1.51898 0.90478 1.18829 0.93439 0.92776 0.96567 1.30354 1.12739 1.15299 1.12775 1.05384 0.74791 0.76769 0.73154 1.93499 1.71733 1.85649 1.45963 1.93535 1.72618 1.85253 1.45594 1.55816 1.54681 1.53257 1.12693 1.22200 1.04161 0.92837 0.83673 1.21751 0.98258 0.95288 1.00187 1.19900 1.04222 0.86346 0.94476 0.82620 1.23127 0.76704 0.90601 0.75193 1.90742 1.38656 1.59075 1.54965 1.84457 1.55773 1.35946 1.55195 1.19085 1.03073 0.95053 0.96521 1.21853 0.97424 1.00599 0.90621 1.21424 1.00097 0.94901 0.99934 1.21281 0.94891 0.97269 0.96642 1.21410 1.04721 1.01999 0.94262 1.17403 0.94594 0.94848 0.84789 0.92319 0.97274 0.97397 0.84030 0.83307 0.86435 0.87323 0.86220 0.92381 0.70917 0.80972 0.82586 0.83826 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.38 13.29 21.45 0.28 -56.09 16 2 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 3 Si 0.97 42.68 29.54 68.60 2.03 44.71 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.54 -29.56 9.11 25.60 0.23 -29.32 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 1.19 4.98 29.85 0.15 1.34 16 10 C -0.58 -22.05 5.92 71.98 0.43 -21.62 16 11 S 2.60 97.39 4.81 -56.49 -0.27 97.12 16 12 O -0.98 -40.82 16.39 -127.65 -2.09 -42.92 16 13 O -0.98 -42.60 15.04 -127.65 -1.92 -44.52 16 14 N -0.94 -26.81 3.20 -337.66 -1.08 -27.89 16 15 C 0.09 1.97 6.46 86.45 0.56 2.53 16 16 C -0.12 -2.19 4.79 30.69 0.15 -2.05 16 17 C -0.03 -0.50 2.77 -12.37 -0.03 -0.53 16 18 H 0.16 1.46 8.14 -2.39 -0.02 1.44 16 19 C 0.50 8.21 7.42 71.23 0.53 8.74 16 20 O -0.54 -12.82 16.59 21.96 0.36 -12.46 16 21 O -0.50 -4.43 10.38 -51.43 -0.53 -4.97 16 22 C -0.13 -2.82 5.46 -19.74 -0.11 -2.93 16 23 C -0.09 -1.52 9.02 22.31 0.20 -1.32 16 24 C -0.14 -2.57 10.04 22.26 0.22 -2.35 16 25 C -0.08 -1.91 10.05 22.24 0.22 -1.68 16 26 C -0.20 -5.99 8.32 22.42 0.19 -5.80 16 27 C 0.18 4.95 6.22 38.14 0.24 5.19 16 28 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.14 4.85 7.10 -2.39 -0.02 4.84 16 32 H 0.15 4.84 8.14 -2.39 -0.02 4.82 16 33 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.11 2.44 6.69 -2.39 -0.02 2.42 16 35 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.06 1.44 7.83 -2.39 -0.02 1.42 16 37 H 0.43 0.40 9.10 -74.06 -0.67 -0.27 16 38 H 0.17 2.07 5.11 -2.91 -0.01 2.06 16 39 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.14 2.78 8.06 -2.92 -0.02 2.75 16 41 H 0.12 3.96 4.60 -2.91 -0.01 3.95 16 Total: -1.00 -81.58 348.03 0.62 -80.95 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.41 Total: 15.51 kcal Atomic # 6 Polarization: -52.88 SS G_CDS: 3.43 Total: -49.45 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -0.79 Total: -83.98 kcal Atomic # 8 Polarization: -100.68 SS G_CDS: -4.18 Total: -104.86 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: 97.39 SS G_CDS: -0.27 Total: 97.12 kcal Total: -81.58 0.62 -80.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594699723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.061 kcal (2) G-P(sol) polarization free energy of solvation -81.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds