Wall clock time and date at job start Tue Mar 31 2020 22:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34708 * 117.00357 * 2 1 4 4 O 1.21471 * 120.00019 * 0.02562 * 3 2 1 5 5 C 1.47721 * 120.00360 * 179.97438 * 3 2 1 6 6 C 1.39653 * 120.14967 * 0.27212 * 5 3 2 7 7 C 1.37927 * 119.84887 * 180.23190 * 6 5 3 8 8 C 1.38386 * 120.14662 * 359.49479 * 7 6 5 9 9 C 1.50700 * 119.84592 * 180.27517 * 8 7 6 10 10 C 1.38345 * 120.30541 * 0.25699 * 8 7 6 11 11 S 1.76204 * 119.92265 * 180.02562 * 10 8 7 12 12 O 1.42101 * 106.40060 * 176.78613 * 11 10 8 13 13 O 1.42098 * 106.40595 * 309.70714 * 11 10 8 14 14 N 1.65600 * 107.21879 * 63.24975 * 11 10 8 15 15 C 1.47066 * 136.05462 * 263.26331 * 14 11 10 16 16 C 1.53759 * 87.88661 * 152.96350 * 15 14 11 17 17 C 1.50700 * 114.26939 * 139.79410 * 16 15 14 18 18 H 1.07997 * 119.99688 * 266.47172 * 17 16 15 19 19 C 1.37872 * 120.00322 * 86.47187 * 17 16 15 20 20 N 1.31514 * 120.00310 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00095 * 180.02562 * 19 17 16 22 22 H 1.48489 * 109.47284 * 59.99885 * 21 19 17 23 23 H 1.48506 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46719 * 299.99668 * 21 19 17 25 25 C 1.47066 * 136.05772 * 83.62968 * 14 11 10 26 26 C 1.37959 * 120.15040 * 359.97438 * 10 8 7 27 27 H 1.08999 * 109.46464 * 299.99730 * 1 2 3 28 28 H 1.09000 * 109.46789 * 59.99590 * 1 2 3 29 29 H 1.08999 * 109.47072 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.07296 * 0.02562 * 6 5 3 31 31 H 1.07997 * 119.92304 * 179.76816 * 7 6 5 32 32 H 1.08999 * 109.47206 * 85.04927 * 9 8 7 33 33 H 1.08998 * 109.47449 * 205.04630 * 9 8 7 34 34 H 1.09005 * 109.47555 * 325.04953 * 9 8 7 35 35 H 1.09002 * 113.46961 * 267.69103 * 15 14 11 36 36 H 1.08996 * 113.47124 * 38.13363 * 15 14 11 37 37 H 1.09003 * 114.39330 * 272.67454 * 16 15 14 38 38 H 0.96996 * 120.00762 * 179.97438 * 20 19 17 39 39 H 1.08996 * 113.46994 * 321.86665 * 25 14 11 40 40 H 1.09003 * 113.46890 * 92.24864 * 25 14 11 41 41 H 1.08007 * 120.07509 * 180.02562 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2775 0.0006 6 6 4.3025 0.1083 -0.0046 7 6 5.6795 0.1877 0.0008 8 6 6.3044 1.4224 0.0008 9 6 7.8094 1.5012 0.0004 10 6 5.5540 2.5847 0.0007 11 16 6.3603 4.1514 0.0000 12 8 5.3336 5.1309 -0.0763 13 8 7.3186 4.1101 1.0484 14 7 7.2172 4.2612 -1.4128 15 6 8.6082 4.0263 -1.8285 16 6 8.0760 3.7279 -3.2399 17 6 8.9227 4.2898 -4.3527 18 1 8.6924 5.2590 -4.7697 19 6 9.9913 3.5666 -4.8385 20 7 10.2722 2.3865 -4.3303 21 14 11.0412 4.2635 -6.2174 22 1 11.6462 5.5467 -5.7789 23 1 12.1178 3.2983 -6.5561 24 1 10.1939 4.4990 -7.4140 25 6 6.9236 4.6425 -2.8024 26 6 4.1760 2.5197 0.0001 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8159 -0.8559 -0.0095 31 1 6.2712 -0.7158 0.0006 32 1 8.1766 1.4318 -1.0235 33 1 8.1237 2.4499 0.4355 34 1 8.2165 0.6790 0.5890 35 1 9.2324 4.9186 -1.7797 36 1 9.0662 3.1639 -1.3443 37 1 7.7860 2.6897 -3.4014 38 1 11.0237 1.8775 -4.6723 39 1 5.9465 4.3051 -3.1480 40 1 7.1027 5.6975 -3.0102 41 1 3.5913 3.4279 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594827371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:13 Heat of formation + Delta-G solvation = -90.729991 kcal Electronic energy + Delta-G solvation = -27493.957221 eV Core-core repulsion = 23467.740113 eV Total energy + Delta-G solvation = -4026.217108 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78436 -39.21013 -38.32908 -37.03743 -36.63468 -35.58689 -33.24476 -32.65859 -31.50177 -28.76182 -28.36213 -27.11089 -24.99486 -24.61096 -23.42680 -23.08908 -21.18067 -19.96684 -18.90533 -18.02126 -17.43613 -17.00960 -16.60650 -16.54680 -16.05521 -15.93601 -15.56460 -14.90664 -14.65714 -14.34730 -14.16128 -13.92590 -13.71766 -13.45566 -13.12625 -12.90336 -12.62384 -12.48950 -12.34471 -12.14353 -11.86258 -11.73478 -11.72694 -11.54319 -11.41537 -11.36573 -11.07821 -10.99150 -10.85011 -10.64407 -10.49716 -10.31977 -9.61082 -9.27179 -9.13519 -9.03685 -8.62078 -8.29174 -6.20401 -4.24267 0.35484 0.61434 0.86500 2.23246 2.40118 3.21127 3.24992 3.30178 3.33104 3.46903 3.99816 4.32099 4.35603 4.43393 4.61725 4.69630 4.79423 4.84372 4.90640 5.07638 5.13150 5.19842 5.31142 5.51200 5.60097 5.73355 5.73568 5.80088 5.91460 6.05597 6.08151 6.15427 6.20344 6.26959 6.36234 6.44122 6.55082 6.65102 6.78941 7.43655 7.48966 7.57813 7.77946 8.17851 8.78842 9.41789 10.89310 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.003271 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.865054 B = 8558.701947 C = 9002.224864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.356 6.356 3 C 0.512 3.488 4 O -0.502 6.502 5 C -0.163 4.163 6 C -0.009 4.009 7 C -0.157 4.157 8 C 0.070 3.930 9 C -0.181 4.181 10 C -0.689 4.689 11 S 2.713 3.287 12 O -0.965 6.965 13 O -0.958 6.958 14 N -1.046 6.046 15 C 0.126 3.874 16 C 0.036 3.964 17 C -0.517 4.517 18 H 0.063 0.937 19 C 0.069 3.931 20 N -0.887 5.887 21 Si 0.895 3.105 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.126 3.874 26 C 0.047 3.953 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.103 0.897 30 H 0.144 0.856 31 H 0.142 0.858 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.264 0.736 39 H 0.055 0.945 40 H 0.076 0.924 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 -7.831 8.231 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.357 3.643 4 O -0.391 6.391 5 C -0.165 4.165 6 C -0.028 4.028 7 C -0.175 4.175 8 C 0.069 3.931 9 C -0.237 4.237 10 C -0.773 4.773 11 S 2.806 3.194 12 O -0.955 6.955 13 O -0.949 6.949 14 N -0.889 5.889 15 C 0.002 3.998 16 C 0.015 3.985 17 C -0.555 4.555 18 H 0.082 0.918 19 C -0.134 4.134 20 N -0.524 5.524 21 Si 0.722 3.278 22 H -0.201 1.201 23 H -0.213 1.213 24 H -0.201 1.201 25 C 0.001 3.999 26 C 0.028 3.972 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.121 0.879 30 H 0.162 0.838 31 H 0.160 0.840 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.094 0.906 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.779 -7.106 9.129 16.510 hybrid contribution 0.042 -0.460 -0.872 0.987 sum -11.737 -7.566 8.257 16.222 Atomic orbital electron populations 1.23298 0.75790 1.03787 1.02807 1.86522 1.23714 1.32572 1.84497 1.21093 0.88882 0.81535 0.72751 1.90860 1.66651 1.35916 1.45677 1.19053 0.89146 0.95032 1.13264 1.21680 0.93932 0.97927 0.89218 1.21208 0.94334 0.97875 1.04093 1.19951 0.96540 0.91751 0.84846 1.21903 0.89432 1.06630 1.05722 1.31141 1.04166 1.22570 1.19473 1.01189 0.72776 0.73244 0.72233 1.93532 1.59110 1.56441 1.86455 1.93508 1.60807 1.86831 1.53735 1.59845 1.23198 1.82046 1.23766 1.23311 0.79628 0.99885 0.97024 1.20515 0.90846 0.95971 0.91200 1.20945 1.12470 1.04111 1.18017 0.91842 1.25003 0.97349 0.94609 0.96482 1.69911 1.28766 1.11710 1.41971 0.86615 0.79896 0.78905 0.82353 1.20064 1.21303 1.20129 1.22862 1.00201 1.00573 0.76237 1.21008 0.92376 0.97912 0.85919 0.91758 0.91654 0.87899 0.83819 0.84007 0.87156 0.88006 0.89439 0.90749 0.91762 0.91360 0.92608 0.92657 0.90556 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.57 101.05 1.07 1.35 16 2 O -0.36 -3.90 9.82 -40.51 -0.40 -4.29 16 3 C 0.51 6.99 7.90 34.61 0.27 7.26 16 4 O -0.50 -8.07 16.14 -19.24 -0.31 -8.38 16 5 C -0.16 -2.24 5.87 -104.98 -0.62 -2.86 16 6 C -0.01 -0.11 9.62 -39.17 -0.38 -0.48 16 7 C -0.16 -1.84 9.70 -39.64 -0.38 -2.23 16 8 C 0.07 1.01 5.88 -104.53 -0.61 0.39 16 9 C -0.18 -2.54 8.22 36.01 0.30 -2.24 16 10 C -0.69 -10.98 5.90 -39.64 -0.23 -11.22 16 11 S 2.71 48.69 5.50 -107.50 -0.59 48.10 16 12 O -0.96 -19.15 16.97 -57.17 -0.97 -20.12 16 13 O -0.96 -18.42 15.51 -57.17 -0.89 -19.31 16 14 N -1.05 -19.35 3.99 -125.01 -0.50 -19.85 16 15 C 0.13 2.50 7.73 -8.37 -0.06 2.44 16 16 C 0.04 0.78 3.79 -91.12 -0.35 0.43 16 17 C -0.52 -12.52 8.83 -34.44 -0.30 -12.82 16 18 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 19 C 0.07 1.72 5.46 -17.82 -0.10 1.63 16 20 N -0.89 -22.88 13.26 55.43 0.74 -22.15 16 21 Si 0.89 19.51 29.54 -169.99 -5.02 14.49 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 C 0.13 2.38 8.29 -8.50 -0.07 2.31 16 26 C 0.05 0.73 9.09 -39.17 -0.36 0.38 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.14 1.22 7.61 -52.49 -0.40 0.82 16 31 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.11 1.64 7.04 -51.93 -0.37 1.27 16 33 H 0.10 1.60 4.15 -51.93 -0.22 1.39 16 34 H 0.09 0.98 8.12 -51.93 -0.42 0.56 16 35 H 0.07 1.49 8.10 -51.93 -0.42 1.07 16 36 H 0.06 1.22 5.60 -51.93 -0.29 0.93 16 37 H 0.07 1.57 8.11 -51.93 -0.42 1.15 16 38 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 41 H 0.16 2.45 6.92 -52.48 -0.36 2.09 16 LS Contribution 359.38 15.07 5.42 5.42 Total: -1.00 -30.34 359.38 -9.33 -39.66 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -4.98 Total: 2.09 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -1.83 Total: -15.66 kcal Atomic # 7 Polarization: -42.24 SS G_CDS: 0.24 Total: -42.00 kcal Atomic # 8 Polarization: -49.54 SS G_CDS: -2.56 Total: -52.11 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Atomic # 16 Polarization: 48.69 SS G_CDS: -0.59 Total: 48.10 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.34 -9.33 -39.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.066 kcal (2) G-P(sol) polarization free energy of solvation -30.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds