Wall clock time and date at job start Tue Mar 31 2020 22:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34708 * 117.00357 * 2 1 4 4 O 1.21471 * 120.00019 * 0.02562 * 3 2 1 5 5 C 1.47721 * 120.00360 * 179.97438 * 3 2 1 6 6 C 1.39653 * 120.14967 * 0.27212 * 5 3 2 7 7 C 1.37927 * 119.84887 * 180.23190 * 6 5 3 8 8 C 1.38386 * 120.14662 * 359.49479 * 7 6 5 9 9 C 1.50700 * 119.84592 * 180.27517 * 8 7 6 10 10 C 1.38345 * 120.30541 * 0.25699 * 8 7 6 11 11 S 1.76204 * 119.92265 * 180.02562 * 10 8 7 12 12 O 1.42101 * 106.40060 * 176.78613 * 11 10 8 13 13 O 1.42098 * 106.40595 * 309.70714 * 11 10 8 14 14 N 1.65600 * 107.21879 * 63.24975 * 11 10 8 15 15 C 1.47066 * 136.05462 * 263.26331 * 14 11 10 16 16 C 1.53759 * 87.88661 * 152.96350 * 15 14 11 17 17 C 1.50700 * 114.26939 * 139.79410 * 16 15 14 18 18 H 1.07997 * 119.99688 * 266.47172 * 17 16 15 19 19 C 1.37872 * 120.00322 * 86.47187 * 17 16 15 20 20 N 1.31514 * 120.00310 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00095 * 180.02562 * 19 17 16 22 22 H 1.48489 * 109.47284 * 59.99885 * 21 19 17 23 23 H 1.48506 * 109.47154 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46719 * 299.99668 * 21 19 17 25 25 C 1.47066 * 136.05772 * 83.62968 * 14 11 10 26 26 C 1.37959 * 120.15040 * 359.97438 * 10 8 7 27 27 H 1.08999 * 109.46464 * 299.99730 * 1 2 3 28 28 H 1.09000 * 109.46789 * 59.99590 * 1 2 3 29 29 H 1.08999 * 109.47072 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.07296 * 0.02562 * 6 5 3 31 31 H 1.07997 * 119.92304 * 179.76816 * 7 6 5 32 32 H 1.08999 * 109.47206 * 85.04927 * 9 8 7 33 33 H 1.08998 * 109.47449 * 205.04630 * 9 8 7 34 34 H 1.09005 * 109.47555 * 325.04953 * 9 8 7 35 35 H 1.09002 * 113.46961 * 267.69103 * 15 14 11 36 36 H 1.08996 * 113.47124 * 38.13363 * 15 14 11 37 37 H 1.09003 * 114.39330 * 272.67454 * 16 15 14 38 38 H 0.96996 * 120.00762 * 179.97438 * 20 19 17 39 39 H 1.08996 * 113.46994 * 321.86665 * 25 14 11 40 40 H 1.09003 * 113.46890 * 92.24864 * 25 14 11 41 41 H 1.08007 * 120.07509 * 180.02562 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2775 0.0006 6 6 4.3025 0.1083 -0.0046 7 6 5.6795 0.1877 0.0008 8 6 6.3044 1.4224 0.0008 9 6 7.8094 1.5012 0.0004 10 6 5.5540 2.5847 0.0007 11 16 6.3603 4.1514 0.0000 12 8 5.3336 5.1309 -0.0763 13 8 7.3186 4.1101 1.0484 14 7 7.2172 4.2612 -1.4128 15 6 8.6082 4.0263 -1.8285 16 6 8.0760 3.7279 -3.2399 17 6 8.9227 4.2898 -4.3527 18 1 8.6924 5.2590 -4.7697 19 6 9.9913 3.5666 -4.8385 20 7 10.2722 2.3865 -4.3303 21 14 11.0412 4.2635 -6.2174 22 1 11.6462 5.5467 -5.7789 23 1 12.1178 3.2983 -6.5561 24 1 10.1939 4.4990 -7.4140 25 6 6.9236 4.6425 -2.8024 26 6 4.1760 2.5197 0.0001 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.8159 -0.8559 -0.0095 31 1 6.2712 -0.7158 0.0006 32 1 8.1766 1.4318 -1.0235 33 1 8.1237 2.4499 0.4355 34 1 8.2165 0.6790 0.5890 35 1 9.2324 4.9186 -1.7797 36 1 9.0662 3.1639 -1.3443 37 1 7.7860 2.6897 -3.4014 38 1 11.0237 1.8775 -4.6723 39 1 5.9465 4.3051 -3.1480 40 1 7.1027 5.6975 -3.0102 41 1 3.5913 3.4279 -0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594827371.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:12 Heat of formation + Delta-G solvation = -109.570660 kcal Electronic energy + Delta-G solvation = -27494.774214 eV Core-core repulsion = 23467.740113 eV Total energy + Delta-G solvation = -4027.034101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.79120 -40.26480 -39.91126 -38.51983 -37.62507 -37.09922 -34.55549 -34.29306 -32.57377 -30.09893 -29.61793 -27.99247 -26.54906 -26.37954 -24.53235 -24.11103 -22.23078 -21.59774 -20.11635 -19.42611 -18.71323 -18.38279 -18.12468 -17.51100 -17.33938 -17.19998 -16.62097 -16.45213 -16.13915 -15.77987 -15.21764 -15.04955 -14.71470 -14.64341 -14.52873 -14.41124 -13.82791 -13.57676 -13.46499 -13.39199 -13.31482 -13.23956 -13.13923 -12.97239 -12.80577 -12.77027 -12.68823 -12.32597 -12.06139 -11.94193 -11.90068 -11.68269 -10.99612 -10.91805 -10.65378 -10.44802 -10.10743 -9.86376 -8.09308 -6.17265 -0.84558 -0.63678 -0.26781 1.19527 1.50197 1.52012 1.53636 1.59590 1.85950 2.32935 2.51150 2.60870 3.05070 3.23672 3.41886 3.53918 3.64222 3.84049 4.00910 4.17663 4.23386 4.29859 4.30950 4.41430 4.44456 4.61599 4.64097 4.66251 4.66618 4.76446 4.81977 4.85733 4.92039 5.03667 5.07939 5.13981 5.15368 5.22201 5.54605 5.69228 5.88690 5.93507 6.35731 6.50330 6.90191 7.50744 8.99955 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015059 B = 0.003271 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.865054 B = 8558.701947 C = 9002.224864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.349 6.349 3 C 0.516 3.484 4 O -0.536 6.536 5 C -0.170 4.170 6 C 0.009 3.991 7 C -0.146 4.146 8 C 0.057 3.943 9 C -0.180 4.180 10 C -0.698 4.698 11 S 2.724 3.276 12 O -0.990 6.990 13 O -0.975 6.975 14 N -1.045 6.045 15 C 0.131 3.869 16 C 0.028 3.972 17 C -0.529 4.529 18 H 0.063 0.937 19 C 0.026 3.974 20 N -0.912 5.912 21 Si 0.949 3.051 22 H -0.273 1.273 23 H -0.288 1.288 24 H -0.273 1.273 25 C 0.129 3.871 26 C 0.030 3.970 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.141 0.859 30 H 0.183 0.817 31 H 0.181 0.819 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.118 0.882 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.264 0.736 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.113 -10.090 8.334 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.265 6.265 3 C 0.362 3.638 4 O -0.427 6.427 5 C -0.172 4.172 6 C -0.009 4.009 7 C -0.164 4.164 8 C 0.056 3.944 9 C -0.236 4.236 10 C -0.786 4.786 11 S 2.820 3.180 12 O -0.980 6.980 13 O -0.966 6.966 14 N -0.886 5.886 15 C 0.006 3.994 16 C 0.007 3.993 17 C -0.568 4.568 18 H 0.081 0.919 19 C -0.175 4.175 20 N -0.551 5.551 21 Si 0.776 3.224 22 H -0.198 1.198 23 H -0.214 1.214 24 H -0.199 1.199 25 C 0.005 3.995 26 C 0.010 3.990 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.159 0.841 30 H 0.200 0.800 31 H 0.198 0.802 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.417 -9.329 9.225 18.064 hybrid contribution 0.112 0.132 -0.857 0.874 sum -12.305 -9.198 8.368 17.494 Atomic orbital electron populations 1.23662 0.73839 1.06253 1.02729 1.86506 1.25527 1.30735 1.83722 1.21110 0.88848 0.81870 0.71994 1.90847 1.67316 1.37194 1.47349 1.19189 0.89654 0.95168 1.13234 1.22107 0.93723 0.98503 0.86564 1.21635 0.94789 0.97988 1.02007 1.20148 0.96583 0.92337 0.85338 1.21870 0.89554 1.06832 1.05373 1.30629 1.04316 1.21613 1.22035 1.00566 0.72169 0.73685 0.71572 1.93496 1.59536 1.58369 1.86625 1.93486 1.61473 1.87452 1.54145 1.59719 1.22665 1.82433 1.23767 1.23092 0.80210 0.99865 0.96184 1.20404 0.92011 0.95465 0.91460 1.21280 1.12706 1.04119 1.18679 0.91858 1.25631 0.98471 0.94969 0.98417 1.70000 1.29295 1.12628 1.43134 0.85750 0.78431 0.78188 0.80066 1.19823 1.21385 1.19867 1.22806 1.00076 1.00351 0.76315 1.20953 0.92199 0.98576 0.87274 0.91767 0.91938 0.84123 0.80013 0.80182 0.88279 0.90042 0.86348 0.91240 0.91196 0.92963 0.92739 0.91202 0.90061 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.57 113.37 1.20 1.56 16 2 O -0.35 -6.68 9.82 -56.18 -0.55 -7.24 16 3 C 0.52 13.37 7.90 70.33 0.56 13.93 16 4 O -0.54 -17.19 16.14 19.93 0.32 -16.87 16 5 C -0.17 -4.41 5.87 -20.10 -0.12 -4.53 16 6 C 0.01 0.17 9.62 22.54 0.22 0.39 16 7 C -0.15 -2.90 9.70 22.23 0.22 -2.69 16 8 C 0.06 1.55 5.88 -19.80 -0.12 1.44 16 9 C -0.18 -4.85 8.22 71.24 0.59 -4.27 16 10 C -0.70 -22.12 5.90 22.23 0.13 -21.99 16 11 S 2.72 99.80 5.50 -56.49 -0.31 99.49 16 12 O -0.99 -40.47 16.97 -128.00 -2.17 -42.64 16 13 O -0.97 -38.18 15.51 -128.00 -1.99 -40.17 16 14 N -1.04 -39.24 3.99 -549.43 -2.19 -41.43 16 15 C 0.13 5.30 7.73 83.27 0.64 5.95 16 16 C 0.03 1.22 3.79 -11.12 -0.04 1.18 16 17 C -0.53 -25.77 8.83 25.60 0.23 -25.54 16 18 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 19 C 0.03 1.29 5.46 84.65 0.46 1.75 16 20 N -0.91 -47.31 13.26 21.45 0.28 -47.03 16 21 Si 0.95 39.91 29.54 68.60 2.03 41.94 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 23 H -0.29 -12.06 7.11 99.48 0.71 -11.35 16 24 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 25 C 0.13 4.93 8.29 83.18 0.69 5.62 16 26 C 0.03 0.92 9.09 22.53 0.20 1.13 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.18 2.10 7.61 -2.91 -0.02 2.08 16 31 H 0.18 2.22 8.06 -2.91 -0.02 2.19 16 32 H 0.10 2.90 7.04 -2.39 -0.02 2.88 16 33 H 0.08 2.55 4.15 -2.39 -0.01 2.54 16 34 H 0.12 2.36 8.12 -2.38 -0.02 2.34 16 35 H 0.07 2.84 8.10 -2.39 -0.02 2.82 16 36 H 0.07 2.71 5.60 -2.39 -0.01 2.70 16 37 H 0.05 2.45 8.11 -2.39 -0.02 2.43 16 38 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 39 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 40 H 0.08 3.00 8.10 -2.39 -0.02 2.98 16 41 H 0.14 4.67 6.92 -2.91 -0.02 4.65 16 Total: -1.00 -66.09 359.38 1.34 -64.75 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.07 Total: 15.27 kcal Atomic # 6 Polarization: -30.94 SS G_CDS: 4.85 Total: -26.09 kcal Atomic # 7 Polarization: -86.55 SS G_CDS: -1.91 Total: -88.46 kcal Atomic # 8 Polarization: -102.52 SS G_CDS: -4.39 Total: -106.91 kcal Atomic # 14 Polarization: 39.91 SS G_CDS: 2.03 Total: 41.94 kcal Atomic # 16 Polarization: 99.80 SS G_CDS: -0.31 Total: 99.49 kcal Total: -66.09 1.34 -64.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594827371.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.820 kcal (2) G-P(sol) polarization free energy of solvation -66.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds