Wall clock time and date at job start Tue Mar 31 2020 21:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47013 * 270.00210 * 3 2 1 5 5 H 1.48497 * 109.46894 * 30.00118 * 3 2 1 6 6 H 1.48499 * 109.47198 * 150.00182 * 3 2 1 7 7 C 1.37880 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99915 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99949 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46639 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.46697 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.54319 * 68.37680 * 11 10 9 13 13 O 1.42094 * 110.54665 * 291.62089 * 11 10 9 14 14 N 1.65601 * 104.44766 * 179.97438 * 11 10 9 15 15 C 1.46657 * 121.29778 * 269.96657 * 14 11 10 16 16 C 1.50816 * 109.69045 * 224.46913 * 15 14 11 17 17 C 1.38830 * 117.81772 * 168.68653 * 16 15 14 18 18 C 1.37954 * 120.50329 * 178.86697 * 17 16 15 19 19 C 1.38257 * 119.72282 * 359.96969 * 18 17 16 20 20 C 1.37918 * 119.82648 * 0.25925 * 19 18 17 21 21 C 1.37671 * 122.33134 * 348.01581 * 16 15 14 22 22 C 1.50604 * 122.84617 * 2.14463 * 21 16 15 23 23 H 1.09001 * 109.19473 * 99.68943 * 22 21 16 24 24 C 1.50703 * 109.19839 * 219.02594 * 22 21 16 25 25 O 1.20825 * 119.99881 * 83.73972 * 24 22 21 26 26 O 1.34227 * 119.99803 * 263.73432 * 24 22 21 27 27 C 1.47223 * 121.31926 * 90.00064 * 14 11 10 28 28 H 0.96998 * 120.00294 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47708 * 59.99626 * 9 7 2 30 30 H 1.09003 * 109.46490 * 299.99555 * 9 7 2 31 31 H 1.09000 * 109.47686 * 59.99826 * 10 9 7 32 32 H 1.08996 * 109.47137 * 299.99360 * 10 9 7 33 33 H 1.09005 * 109.38521 * 104.43519 * 15 14 11 34 34 H 1.09000 * 109.48408 * 344.56451 * 15 14 11 35 35 H 1.08004 * 119.74446 * 358.83953 * 17 16 15 36 36 H 1.08009 * 120.13856 * 179.97438 * 18 17 16 37 37 H 1.08003 * 120.09350 * 180.29277 * 19 18 17 38 38 H 1.08001 * 119.71057 * 179.73259 * 20 19 18 39 39 H 0.96700 * 117.00230 * 180.02562 * 26 24 22 40 40 H 1.09001 * 109.76632 * 356.29073 * 27 14 11 41 41 H 1.08998 * 109.77001 * 235.50298 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0215 -2.6364 -0.0014 11 16 5.8356 -2.6364 -0.0014 12 8 6.3343 -2.1472 1.2361 13 8 6.3342 -2.1449 -1.2379 14 7 6.2488 -4.2400 -0.0023 15 6 6.4397 -4.9782 1.2505 16 6 7.6848 -5.8240 1.1572 17 6 8.1610 -6.4070 2.3238 18 6 9.2822 -7.2103 2.2981 19 6 9.9359 -7.4367 1.1011 20 6 9.4667 -6.8544 -0.0577 21 6 8.3408 -6.0400 -0.0338 22 6 7.9024 -5.4161 -1.3325 23 1 8.5252 -4.5459 -1.5403 24 6 8.0663 -6.4197 -2.4447 25 8 7.2022 -7.2384 -2.6518 26 8 9.1722 -6.4040 -3.2052 27 6 6.4398 -4.9804 -1.2604 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6807 0.8904 30 1 3.8751 -0.6795 -0.8895 31 1 3.6585 -3.1494 -0.8920 32 1 3.6579 -3.1512 0.8879 33 1 5.5771 -5.6209 1.4268 34 1 6.5410 -4.2736 2.0759 35 1 7.6499 -6.2298 3.2586 36 1 9.6477 -7.6605 3.2093 37 1 10.8115 -8.0684 1.0733 38 1 9.9813 -7.0290 -0.9910 39 1 9.2322 -7.0670 -3.9066 40 1 6.2051 -4.3352 -2.1070 41 1 5.7928 -5.8575 -1.2738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596022549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:44 Heat of formation + Delta-G solvation = -134.826290 kcal Electronic energy + Delta-G solvation = -27496.518386 eV Core-core repulsion = 23468.389119 eV Total energy + Delta-G solvation = -4028.129267 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21184 -39.64737 -37.03279 -36.87215 -36.32187 -35.66820 -33.99049 -33.42034 -31.54144 -31.47625 -29.83720 -26.08958 -25.89198 -24.81285 -23.18172 -21.71030 -21.27319 -20.38399 -18.69405 -18.42050 -17.86564 -17.40936 -16.96438 -16.86744 -16.03281 -15.89183 -15.58400 -15.24318 -15.14402 -14.53476 -14.30710 -14.18435 -13.85402 -13.66138 -13.48018 -13.33174 -12.91882 -12.79196 -12.62231 -12.12102 -11.97137 -11.92777 -11.91370 -11.82883 -11.62302 -11.35043 -11.29141 -11.25711 -10.99520 -10.94180 -10.48396 -10.21002 -9.83484 -9.50136 -9.20336 -9.01186 -8.88545 -8.68915 -6.18954 -4.20695 0.46560 0.97265 1.05429 1.84473 2.53174 2.83695 3.24631 3.32198 3.35701 3.44727 4.05427 4.16095 4.22942 4.29043 4.33410 4.51071 4.65764 4.72239 4.78852 4.98733 5.01362 5.10235 5.12321 5.22240 5.26251 5.33871 5.45658 5.45840 5.56779 5.65016 5.70141 5.77834 6.09022 6.10997 6.19846 6.20458 6.22582 6.39378 6.65370 6.76779 6.89110 7.51344 7.54492 8.33685 8.82177 9.40352 10.93367 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.003155 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.299758 B = 8873.345021 C = 9564.825255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.262 1.262 7 C -0.520 4.520 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.579 4.579 11 S 2.586 3.414 12 O -0.958 6.958 13 O -0.959 6.959 14 N -1.004 6.004 15 C 0.152 3.848 16 C -0.070 4.070 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.067 4.067 22 C -0.054 4.054 23 H 0.122 0.878 24 C 0.494 3.506 25 O -0.504 6.504 26 O -0.513 6.513 27 C 0.133 3.867 28 H 0.267 0.733 29 H 0.033 0.967 30 H 0.028 0.972 31 H 0.127 0.873 32 H 0.128 0.872 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.131 0.869 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.411 0.589 40 H 0.106 0.894 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.046 -16.596 0.231 26.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.131 4.131 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.559 4.559 8 H 0.097 0.903 9 C -0.047 4.047 10 C -0.712 4.712 11 S 2.686 3.314 12 O -0.948 6.948 13 O -0.949 6.949 14 N -0.839 5.839 15 C 0.027 3.973 16 C -0.071 4.071 17 C -0.131 4.131 18 C -0.131 4.131 19 C -0.137 4.137 20 C -0.137 4.137 21 C -0.067 4.067 22 C -0.075 4.075 23 H 0.140 0.860 24 C 0.334 3.666 25 O -0.390 6.390 26 O -0.325 6.325 27 C 0.007 3.993 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.146 0.854 32 H 0.146 0.854 33 H 0.106 0.894 34 H 0.131 0.869 35 H 0.149 0.851 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.142 0.858 39 H 0.270 0.730 40 H 0.125 0.875 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.250 -15.679 0.490 25.615 hybrid contribution -0.089 -0.012 -0.537 0.545 sum 20.160 -15.692 -0.047 25.548 Atomic orbital electron populations 1.69875 1.06218 1.27305 1.49852 1.24985 0.94818 0.99166 0.94100 0.86930 0.80695 0.83705 0.79155 1.19642 1.20715 1.18615 1.20836 0.87721 0.94962 1.52429 0.90344 1.19427 0.99990 0.87340 0.97905 1.30326 1.20444 1.09257 1.11202 1.05891 0.79380 0.71819 0.74319 1.93545 1.78941 1.77182 1.45135 1.93547 1.78962 1.77159 1.45257 1.58014 1.85202 1.29872 1.10776 1.20373 0.94995 0.95314 0.86631 1.19745 0.96593 0.98127 0.92680 1.21092 0.96968 0.97463 0.97587 1.21128 0.95611 0.98232 0.98092 1.21044 1.00085 1.00017 0.92557 1.21261 0.95846 0.97479 0.99111 1.18855 0.96390 0.98893 0.92602 1.20184 1.01096 0.97159 0.89077 0.86037 1.23031 0.78720 0.83557 0.81243 1.90738 1.41995 1.37717 1.68600 1.84575 1.42781 1.58989 1.46180 1.21273 0.92642 0.98617 0.86808 0.92330 0.94883 0.95352 0.85433 0.85378 0.89390 0.86923 0.85130 0.85587 0.85793 0.85815 0.72981 0.87538 0.88718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 2 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 7 C -0.52 -14.31 9.66 -34.44 -0.33 -14.64 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 10 C -0.58 -10.17 6.12 37.16 0.23 -9.94 16 11 S 2.59 42.25 5.47 -107.50 -0.59 41.66 16 12 O -0.96 -17.79 16.62 -57.54 -0.96 -18.75 16 13 O -0.96 -17.74 16.77 -57.54 -0.96 -18.71 16 14 N -1.00 -12.79 3.19 -115.05 -0.37 -13.16 16 15 C 0.15 1.66 6.27 -5.05 -0.03 1.63 16 16 C -0.07 -0.76 5.82 -104.55 -0.61 -1.37 16 17 C -0.11 -1.03 9.62 -39.47 -0.38 -1.41 16 18 C -0.11 -0.93 10.05 -39.68 -0.40 -1.32 16 19 C -0.12 -1.01 10.04 -39.69 -0.40 -1.41 16 20 C -0.12 -1.16 9.04 -39.43 -0.36 -1.52 16 21 C -0.07 -0.75 5.47 -104.60 -0.57 -1.32 16 22 C -0.05 -0.60 2.88 -93.08 -0.27 -0.87 16 23 H 0.12 1.31 8.14 -51.93 -0.42 0.89 16 24 C 0.49 5.15 6.04 36.01 0.22 5.36 16 25 O -0.50 -6.47 16.84 -18.75 -0.32 -6.79 16 26 O -0.51 -3.87 12.72 -39.25 -0.50 -4.37 16 27 C 0.13 1.55 5.51 -3.76 -0.02 1.53 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 29 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 30 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 31 H 0.13 2.03 8.14 -51.92 -0.42 1.61 16 32 H 0.13 2.01 8.14 -51.93 -0.42 1.59 16 33 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.11 1.23 6.87 -51.93 -0.36 0.87 16 35 H 0.13 0.91 8.05 -52.48 -0.42 0.49 16 36 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 37 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 38 H 0.12 1.05 6.60 -52.49 -0.35 0.71 16 39 H 0.41 1.29 9.10 45.56 0.41 1.71 16 40 H 0.11 1.21 7.12 -51.93 -0.37 0.84 16 41 H 0.09 1.04 7.45 -51.93 -0.39 0.65 16 LS Contribution 354.79 15.07 5.35 5.35 Total: -1.00 -36.35 354.79 -9.73 -46.08 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -4.36 Total: 1.78 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -3.13 Total: -23.59 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.41 Total: -39.19 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -2.74 Total: -48.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Atomic # 16 Polarization: 42.25 SS G_CDS: -0.59 Total: 41.66 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -36.35 -9.73 -46.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596022549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.750 kcal (2) G-P(sol) polarization free energy of solvation -36.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds