Wall clock time and date at job start Tue Mar 31 2020 21:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99944 * 2 1 4 4 H 1.48501 * 109.47013 * 270.00210 * 3 2 1 5 5 H 1.48497 * 109.46894 * 30.00118 * 3 2 1 6 6 H 1.48499 * 109.47198 * 150.00182 * 3 2 1 7 7 C 1.37880 * 120.00291 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99915 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99949 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.46639 * 180.02562 * 9 7 2 11 11 S 1.81407 * 109.46697 * 179.97438 * 10 9 7 12 12 O 1.42103 * 110.54319 * 68.37680 * 11 10 9 13 13 O 1.42094 * 110.54665 * 291.62089 * 11 10 9 14 14 N 1.65601 * 104.44766 * 179.97438 * 11 10 9 15 15 C 1.46657 * 121.29778 * 269.96657 * 14 11 10 16 16 C 1.50816 * 109.69045 * 224.46913 * 15 14 11 17 17 C 1.38830 * 117.81772 * 168.68653 * 16 15 14 18 18 C 1.37954 * 120.50329 * 178.86697 * 17 16 15 19 19 C 1.38257 * 119.72282 * 359.96969 * 18 17 16 20 20 C 1.37918 * 119.82648 * 0.25925 * 19 18 17 21 21 C 1.37671 * 122.33134 * 348.01581 * 16 15 14 22 22 C 1.50604 * 122.84617 * 2.14463 * 21 16 15 23 23 H 1.09001 * 109.19473 * 99.68943 * 22 21 16 24 24 C 1.50703 * 109.19839 * 219.02594 * 22 21 16 25 25 O 1.20825 * 119.99881 * 83.73972 * 24 22 21 26 26 O 1.34227 * 119.99803 * 263.73432 * 24 22 21 27 27 C 1.47223 * 121.31926 * 90.00064 * 14 11 10 28 28 H 0.96998 * 120.00294 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.47708 * 59.99626 * 9 7 2 30 30 H 1.09003 * 109.46490 * 299.99555 * 9 7 2 31 31 H 1.09000 * 109.47686 * 59.99826 * 10 9 7 32 32 H 1.08996 * 109.47137 * 299.99360 * 10 9 7 33 33 H 1.09005 * 109.38521 * 104.43519 * 15 14 11 34 34 H 1.09000 * 109.48408 * 344.56451 * 15 14 11 35 35 H 1.08004 * 119.74446 * 358.83953 * 17 16 15 36 36 H 1.08009 * 120.13856 * 179.97438 * 18 17 16 37 37 H 1.08003 * 120.09350 * 180.29277 * 19 18 17 38 38 H 1.08001 * 119.71057 * 179.73259 * 20 19 18 39 39 H 0.96700 * 117.00230 * 180.02562 * 26 24 22 40 40 H 1.09001 * 109.76632 * 356.29073 * 27 14 11 41 41 H 1.08998 * 109.77001 * 235.50298 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0215 -2.6364 -0.0014 11 16 5.8356 -2.6364 -0.0014 12 8 6.3343 -2.1472 1.2361 13 8 6.3342 -2.1449 -1.2379 14 7 6.2488 -4.2400 -0.0023 15 6 6.4397 -4.9782 1.2505 16 6 7.6848 -5.8240 1.1572 17 6 8.1610 -6.4070 2.3238 18 6 9.2822 -7.2103 2.2981 19 6 9.9359 -7.4367 1.1011 20 6 9.4667 -6.8544 -0.0577 21 6 8.3408 -6.0400 -0.0338 22 6 7.9024 -5.4161 -1.3325 23 1 8.5252 -4.5459 -1.5403 24 6 8.0663 -6.4197 -2.4447 25 8 7.2022 -7.2384 -2.6518 26 8 9.1722 -6.4040 -3.2052 27 6 6.4398 -4.9804 -1.2604 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6807 0.8904 30 1 3.8751 -0.6795 -0.8895 31 1 3.6585 -3.1494 -0.8920 32 1 3.6579 -3.1512 0.8879 33 1 5.5771 -5.6209 1.4268 34 1 6.5410 -4.2736 2.0759 35 1 7.6499 -6.2298 3.2586 36 1 9.6477 -7.6605 3.2093 37 1 10.8115 -8.0684 1.0733 38 1 9.9813 -7.0290 -0.9910 39 1 9.2322 -7.0670 -3.9066 40 1 6.2051 -4.3352 -2.1070 41 1 5.7928 -5.8575 -1.2738 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596022549.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:43 Heat of formation + Delta-G solvation = -161.044763 kcal Electronic energy + Delta-G solvation = -27497.655304 eV Core-core repulsion = 23468.389119 eV Total energy + Delta-G solvation = -4029.266185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.99067 -40.38405 -38.32056 -37.79867 -37.14685 -37.02225 -35.89443 -34.21935 -33.47659 -32.27112 -30.57794 -27.90407 -26.74964 -25.72362 -23.89574 -23.09820 -22.41634 -21.29031 -19.82887 -19.38977 -19.17010 -18.67538 -18.15071 -17.71521 -17.13741 -17.05828 -16.47177 -16.41639 -16.17988 -16.00685 -15.46398 -15.15232 -14.95939 -14.82101 -14.65138 -14.20471 -14.10010 -13.82215 -13.74860 -13.49207 -13.28398 -13.14050 -13.07516 -13.05457 -12.96128 -12.68048 -12.55863 -12.23591 -12.07331 -11.96400 -11.83970 -11.75807 -11.70226 -11.32096 -10.84072 -10.27155 -9.74409 -9.60627 -8.36034 -6.42080 -0.85828 0.27901 0.37639 1.04553 1.33014 1.34808 1.44699 1.49558 2.00996 2.30111 2.73395 2.76991 2.97979 3.06160 3.36712 3.40090 3.64308 3.79938 3.96019 4.02237 4.05458 4.15182 4.23573 4.31223 4.39811 4.46218 4.54547 4.56504 4.61044 4.72928 4.84301 5.00762 5.03625 5.06153 5.11285 5.26083 5.44491 5.47542 5.50897 5.55916 5.60564 6.01325 6.17109 6.64473 6.90446 7.22440 8.79554 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.003155 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.299758 B = 8873.345021 C = 9564.825255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.013 3.987 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.247 1.247 7 C -0.528 4.528 8 H 0.049 0.951 9 C -0.017 4.017 10 C -0.586 4.586 11 S 2.618 3.382 12 O -0.978 6.978 13 O -0.980 6.980 14 N -0.996 5.996 15 C 0.144 3.856 16 C -0.089 4.089 17 C -0.119 4.119 18 C -0.113 4.113 19 C -0.121 4.121 20 C -0.130 4.130 21 C -0.088 4.088 22 C -0.057 4.057 23 H 0.120 0.880 24 C 0.504 3.496 25 O -0.532 6.532 26 O -0.506 6.506 27 C 0.127 3.873 28 H 0.270 0.730 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.148 0.852 38 H 0.131 0.869 39 H 0.431 0.569 40 H 0.106 0.894 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.474 -17.487 0.710 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.185 4.185 3 Si 0.747 3.253 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.171 1.171 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.057 4.057 10 C -0.717 4.717 11 S 2.716 3.284 12 O -0.969 6.969 13 O -0.971 6.971 14 N -0.832 5.832 15 C 0.020 3.980 16 C -0.091 4.091 17 C -0.137 4.137 18 C -0.131 4.131 19 C -0.139 4.139 20 C -0.148 4.148 21 C -0.088 4.088 22 C -0.078 4.078 23 H 0.138 0.862 24 C 0.346 3.654 25 O -0.422 6.422 26 O -0.320 6.320 27 C 0.001 3.999 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.158 0.842 32 H 0.162 0.838 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.166 0.834 38 H 0.149 0.851 39 H 0.294 0.706 40 H 0.125 0.875 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 22.691 -16.573 0.954 28.115 hybrid contribution -0.776 0.098 -0.691 1.044 sum 21.915 -16.475 0.262 27.418 Atomic orbital electron populations 1.70007 1.07947 1.28412 1.51670 1.25882 0.95622 1.03062 0.93970 0.86026 0.79990 0.79353 0.79887 1.18566 1.19968 1.17081 1.21175 0.90259 0.93879 1.51348 0.93237 1.19387 0.97188 0.91081 0.97999 1.30329 1.22462 1.06152 1.12792 1.04726 0.78100 0.72365 0.73208 1.93514 1.78900 1.78395 1.46067 1.93514 1.78925 1.78405 1.46227 1.57628 1.84628 1.28826 1.12141 1.20630 0.96379 0.95528 0.85442 1.19849 0.96846 0.98948 0.93413 1.21381 0.97392 0.97238 0.97736 1.21498 0.94973 0.97511 0.99109 1.21402 1.00630 0.99647 0.92180 1.21438 0.95698 0.97554 1.00129 1.18990 0.97355 0.99903 0.92552 1.20152 1.00353 0.97430 0.89872 0.86222 1.22828 0.78777 0.82802 0.81008 1.90730 1.43110 1.38845 1.69472 1.84525 1.41281 1.59671 1.46487 1.21414 0.93660 0.98660 0.86143 0.92117 0.94723 0.95012 0.84154 0.83802 0.87227 0.87018 0.83294 0.82947 0.83398 0.85079 0.70606 0.87545 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.59 13.96 21.45 0.30 -57.29 16 2 C 0.01 0.76 5.47 84.66 0.46 1.22 16 3 Si 0.92 43.32 27.47 68.60 1.88 45.21 16 4 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 7 C -0.53 -29.46 9.66 25.60 0.25 -29.21 16 8 H 0.05 2.96 7.99 -2.91 -0.02 2.93 16 9 C -0.02 -0.80 4.05 29.85 0.12 -0.68 16 10 C -0.59 -20.19 6.12 71.98 0.44 -19.75 16 11 S 2.62 83.00 5.47 -56.49 -0.31 82.69 16 12 O -0.98 -35.31 16.62 -127.65 -2.12 -37.43 16 13 O -0.98 -35.47 16.77 -127.65 -2.14 -37.61 16 14 N -1.00 -24.28 3.19 -517.92 -1.65 -25.93 16 15 C 0.14 2.95 6.27 85.64 0.54 3.49 16 16 C -0.09 -1.80 5.82 -19.82 -0.12 -1.92 16 17 C -0.12 -1.91 9.62 22.34 0.21 -1.69 16 18 C -0.11 -1.53 10.05 22.21 0.22 -1.31 16 19 C -0.12 -1.72 10.04 22.20 0.22 -1.50 16 20 C -0.13 -2.31 9.04 22.37 0.20 -2.11 16 21 C -0.09 -1.84 5.47 -19.85 -0.11 -1.95 16 22 C -0.06 -1.22 2.88 -12.39 -0.04 -1.25 16 23 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 24 C 0.50 9.93 6.04 71.24 0.43 10.36 16 25 O -0.53 -13.22 16.84 21.97 0.37 -12.85 16 26 O -0.51 -6.74 12.72 -51.38 -0.65 -7.40 16 27 C 0.13 2.87 5.51 86.17 0.48 3.34 16 28 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 29 H 0.03 1.56 7.20 -2.39 -0.02 1.55 16 30 H 0.03 1.42 7.57 -2.39 -0.02 1.40 16 31 H 0.14 4.41 8.14 -2.39 -0.02 4.39 16 32 H 0.14 4.42 8.14 -2.39 -0.02 4.40 16 33 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 34 H 0.11 2.29 6.87 -2.39 -0.02 2.27 16 35 H 0.15 1.71 8.05 -2.91 -0.02 1.68 16 36 H 0.15 1.20 8.06 -2.91 -0.02 1.18 16 37 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.13 2.00 6.60 -2.91 -0.02 1.98 16 39 H 0.43 1.82 9.10 -74.06 -0.67 1.15 16 40 H 0.11 2.37 7.12 -2.39 -0.02 2.35 16 41 H 0.10 2.16 7.45 -2.39 -0.02 2.14 16 Total: -1.00 -78.40 354.79 -0.66 -79.06 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.34 Total: 14.50 kcal Atomic # 6 Polarization: -46.27 SS G_CDS: 3.32 Total: -42.95 kcal Atomic # 7 Polarization: -81.87 SS G_CDS: -1.35 Total: -83.22 kcal Atomic # 8 Polarization: -90.74 SS G_CDS: -4.55 Total: -95.28 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 1.88 Total: 45.21 kcal Atomic # 16 Polarization: 83.00 SS G_CDS: -0.31 Total: 82.69 kcal Total: -78.40 -0.66 -79.06 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596022549.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.985 kcal (2) G-P(sol) polarization free energy of solvation -78.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds