Wall clock time and date at job start Tue Mar 31 2020 22:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00319 * 2 1 4 4 H 1.48501 * 109.47441 * 244.99637 * 3 2 1 5 5 H 1.48499 * 109.47303 * 5.00062 * 3 2 1 6 6 H 1.48501 * 109.47166 * 124.99687 * 3 2 1 7 7 C 1.39948 * 119.99681 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99873 * 159.92589 * 7 2 1 9 9 C 1.41400 * 120.00179 * 339.92019 * 7 2 1 10 10 C 1.40739 * 120.24101 * 337.21491 * 9 7 2 11 11 C 1.37598 * 119.74086 * 180.31718 * 10 9 7 12 12 C 1.38660 * 120.24636 * 359.66596 * 11 10 9 13 13 C 1.38609 * 120.50577 * 0.02562 * 12 11 10 14 14 C 1.37641 * 120.24388 * 0.02575 * 13 12 11 15 15 S 1.76202 * 120.12260 * 179.97438 * 14 13 12 16 16 O 1.42096 * 106.40017 * 232.02296 * 15 14 13 17 17 O 1.42102 * 106.40211 * 99.10687 * 15 14 13 18 18 N 1.65598 * 107.22150 * 345.56248 * 15 14 13 19 19 C 1.46914 * 120.63321 * 266.21740 * 18 15 14 20 20 C 1.53199 * 108.77843 * 126.36792 * 19 18 15 21 21 C 1.53043 * 109.30843 * 54.63284 * 20 19 18 22 22 C 1.53038 * 109.53991 * 298.63767 * 21 20 19 23 23 C 1.46928 * 120.62565 * 86.19262 * 18 15 14 24 24 H 1.09003 * 109.58707 * 113.84559 * 23 18 15 25 25 C 1.50701 * 109.59113 * 353.42109 * 23 18 15 26 26 O 1.20825 * 119.99686 * 303.32660 * 25 23 18 27 27 O 1.34226 * 120.00294 * 123.32494 * 25 23 18 28 28 H 0.97003 * 119.99590 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.12623 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.87105 * 179.68110 * 11 10 9 31 31 H 1.08001 * 119.74535 * 179.97438 * 12 11 10 32 32 H 1.07993 * 119.87789 * 179.97438 * 13 12 11 33 33 H 1.08999 * 109.59129 * 6.57964 * 19 18 15 34 34 H 1.09002 * 109.58900 * 246.15414 * 19 18 15 35 35 H 1.08996 * 109.49455 * 294.68411 * 20 19 18 36 36 H 1.08996 * 109.52420 * 174.60210 * 20 19 18 37 37 H 1.09001 * 109.45629 * 178.61710 * 21 20 19 38 38 H 1.09003 * 109.45554 * 58.66239 * 21 20 19 39 39 H 1.09003 * 109.49268 * 301.41145 * 22 21 20 40 40 H 1.09001 * 109.52193 * 181.33623 * 22 21 20 41 41 H 0.96695 * 117.00118 * 185.01609 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0023 1.7505 -1.2688 5 1 1.2820 2.7438 0.1220 6 1 3.1852 1.6448 1.1469 7 6 2.0078 -1.2120 0.0005 8 1 3.0387 -1.2406 -0.3205 9 6 1.3653 -2.3992 0.4215 10 6 0.2419 -2.3356 1.2669 11 6 -0.3715 -3.4975 1.6755 12 6 0.1090 -4.7273 1.2519 13 6 1.2108 -4.8016 0.4141 14 6 1.8407 -3.6523 -0.0063 15 16 3.2414 -3.7504 -1.0708 16 8 4.2651 -2.9777 -0.4591 17 8 2.7636 -3.5051 -2.3864 18 7 3.7649 -5.3213 -1.0487 19 6 4.8206 -5.7456 -0.1192 20 6 4.3155 -6.9475 0.6853 21 6 3.8494 -8.0415 -0.2782 22 6 2.6953 -7.5129 -1.1330 23 6 3.1820 -6.3174 -1.9579 24 1 3.9377 -6.6484 -2.6703 25 6 2.0194 -5.7072 -2.6976 26 8 1.0963 -5.2284 -2.0825 27 8 2.0094 -5.6955 -4.0398 28 1 -0.4850 0.8401 -0.0004 29 1 -0.1343 -1.3787 1.5974 30 1 -1.2305 -3.4514 2.3285 31 1 -0.3784 -5.6342 1.5780 32 1 1.5768 -5.7647 0.0907 33 1 5.0609 -4.9269 0.5591 34 1 5.7100 -6.0300 -0.6815 35 1 3.4819 -6.6388 1.3160 36 1 5.1215 -7.3323 1.3101 37 1 3.5124 -8.9075 0.2915 38 1 4.6770 -8.3323 -0.9251 39 1 1.8769 -7.1989 -0.4851 40 1 2.3478 -8.2998 -1.8026 41 1 1.2802 -5.2280 -4.4694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600939586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:21 Heat of formation + Delta-G solvation = -158.182803 kcal Electronic energy + Delta-G solvation = -29781.938119 eV Core-core repulsion = 25752.796038 eV Total energy + Delta-G solvation = -4029.142081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66933 -39.38861 -39.14135 -38.09405 -36.92298 -36.83748 -35.75544 -33.52238 -32.53184 -32.04563 -31.37756 -27.41323 -26.57644 -24.93058 -23.44220 -23.11314 -22.70362 -21.43739 -19.76176 -19.56723 -19.17925 -18.54867 -18.08732 -17.43216 -17.17264 -17.07652 -16.17853 -16.08883 -15.70536 -15.65806 -15.21884 -15.01698 -14.81898 -14.61868 -14.40339 -14.22632 -13.77800 -13.67018 -13.48268 -13.09332 -13.02406 -12.99184 -12.94342 -12.84793 -12.49458 -12.40740 -12.27879 -12.22406 -12.08153 -11.79347 -11.59877 -11.39708 -11.23417 -11.14606 -10.95869 -10.09215 -9.76001 -9.42791 -8.90710 -6.68044 -0.42973 0.59806 1.00048 1.10807 1.25476 1.38227 1.47382 1.89996 2.09445 2.27587 2.52847 2.86270 3.34143 3.62353 3.64279 3.89965 4.09439 4.10899 4.20486 4.27680 4.33606 4.37890 4.46968 4.65331 4.72526 4.73308 4.88046 4.96677 4.99634 5.09441 5.21679 5.24580 5.29351 5.30430 5.51036 5.55817 5.56870 5.69539 5.73033 5.83551 6.02112 6.07709 6.46026 6.60695 6.84142 6.96472 8.06603 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014999 B = 0.005423 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.351633 B = 5162.239670 C = 5422.040210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.042 3.958 3 Si 0.971 3.029 4 H -0.260 1.260 5 H -0.246 1.246 6 H -0.252 1.252 7 C -0.523 4.523 8 H 0.083 0.917 9 C 0.154 3.846 10 C -0.205 4.205 11 C -0.072 4.072 12 C -0.266 4.266 13 C 0.024 3.976 14 C -0.773 4.773 15 S 2.710 3.290 16 O -0.999 6.999 17 O -1.002 7.002 18 N -0.991 5.991 19 C 0.110 3.890 20 C -0.140 4.140 21 C -0.104 4.104 22 C -0.132 4.132 23 C 0.162 3.838 24 H 0.143 0.857 25 C 0.459 3.541 26 O -0.522 6.522 27 O -0.503 6.503 28 H 0.298 0.702 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.078 0.922 34 H 0.109 0.891 35 H 0.053 0.947 36 H 0.109 0.891 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.252 -15.884 -1.660 17.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.177 4.177 3 Si 0.789 3.211 4 H -0.184 1.184 5 H -0.169 1.169 6 H -0.176 1.176 7 C -0.550 4.550 8 H 0.100 0.900 9 C 0.150 3.850 10 C -0.225 4.225 11 C -0.091 4.091 12 C -0.286 4.286 13 C 0.005 3.995 14 C -0.867 4.867 15 S 2.809 3.191 16 O -0.989 6.989 17 O -0.992 6.992 18 N -0.833 5.833 19 C -0.013 4.013 20 C -0.179 4.179 21 C -0.142 4.142 22 C -0.171 4.171 23 C 0.055 3.945 24 H 0.160 0.840 25 C 0.301 3.699 26 O -0.411 6.411 27 O -0.315 6.315 28 H 0.110 0.890 29 H 0.127 0.873 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.097 0.903 34 H 0.127 0.873 35 H 0.072 0.928 36 H 0.127 0.873 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 7.496 -15.135 -1.840 16.989 hybrid contribution -1.326 1.486 0.057 1.993 sum 6.170 -13.648 -1.783 15.084 Atomic orbital electron populations 1.69850 1.09000 1.31689 1.31558 1.26845 0.95606 1.04816 0.90438 0.85428 0.79541 0.75354 0.80729 1.18418 1.16881 1.17599 1.20352 0.99922 0.94027 1.40724 0.89954 1.17303 0.90502 0.90601 0.86597 1.21400 1.00393 0.97858 1.02817 1.21195 0.97615 0.93059 0.97196 1.20870 1.02344 0.96967 1.08415 1.20695 0.92754 0.95659 0.90368 1.29898 1.27844 0.99872 1.29053 1.00836 0.73250 0.71613 0.73428 1.93417 1.58808 1.68059 1.78606 1.93383 1.82527 1.83481 1.39763 1.57636 1.50630 1.25621 1.49426 1.21890 0.89047 0.98950 0.91414 1.22039 1.02503 0.94996 0.98371 1.21479 0.97403 0.97682 0.97592 1.22183 1.00271 0.95103 0.99539 1.20830 0.92817 0.89148 0.91686 0.83957 1.23711 0.88357 0.75597 0.82267 1.90957 1.38668 1.42917 1.68515 1.84281 1.54900 1.71798 1.20509 0.89041 0.87260 0.86186 0.85637 0.84531 0.90325 0.87308 0.92816 0.87285 0.88800 0.88686 0.91700 0.87058 0.71500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -43.76 10.98 21.83 0.24 -43.52 16 2 C 0.04 2.31 5.10 85.26 0.44 2.74 16 3 Si 0.97 41.22 29.60 68.60 2.03 43.25 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 6 H -0.25 -10.44 7.11 99.48 0.71 -9.74 16 7 C -0.52 -31.56 8.38 23.46 0.20 -31.37 16 8 H 0.08 5.07 5.54 -2.91 -0.02 5.05 16 9 C 0.15 9.17 5.59 -21.29 -0.12 9.05 16 10 C -0.20 -11.49 8.72 22.73 0.20 -11.29 16 11 C -0.07 -3.49 10.02 22.22 0.22 -3.27 16 12 C -0.27 -11.96 10.05 22.46 0.23 -11.74 16 13 C 0.02 1.10 7.37 22.22 0.16 1.26 16 14 C -0.77 -40.81 5.09 22.73 0.12 -40.69 16 15 S 2.71 128.65 4.22 -56.49 -0.24 128.41 16 16 O -1.00 -51.72 14.56 -128.00 -1.86 -53.58 16 17 O -1.00 -51.98 14.03 -117.35 -1.65 -53.63 16 18 N -0.99 -31.82 2.49 -494.66 -1.23 -33.06 16 19 C 0.11 2.63 6.40 86.37 0.55 3.19 16 20 C -0.14 -2.45 6.08 30.68 0.19 -2.26 16 21 C -0.10 -1.33 5.88 30.62 0.18 -1.15 16 22 C -0.13 -2.49 5.06 30.67 0.16 -2.33 16 23 C 0.16 4.19 3.05 44.23 0.13 4.32 16 24 H 0.14 2.64 8.14 -2.39 -0.02 2.62 16 25 C 0.46 15.64 4.48 71.24 0.32 15.96 16 26 O -0.52 -22.49 11.65 29.26 0.34 -22.15 16 27 O -0.50 -14.53 13.39 -47.80 -0.64 -15.17 16 28 H 0.30 14.42 8.30 -92.71 -0.77 13.65 16 29 H 0.11 6.23 6.12 -2.91 -0.02 6.21 16 30 H 0.12 4.94 8.06 -2.91 -0.02 4.91 16 31 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 32 H 0.14 5.18 3.12 -2.91 -0.01 5.17 16 33 H 0.08 2.24 7.02 -2.39 -0.02 2.22 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 1.55 5.32 -2.39 -0.01 1.53 16 40 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.42 10.23 9.10 -74.06 -0.67 9.56 16 Total: -1.00 -83.04 331.16 0.38 -82.66 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 0.42 Total: 34.36 kcal Atomic # 6 Polarization: -70.54 SS G_CDS: 2.97 Total: -67.57 kcal Atomic # 7 Polarization: -75.58 SS G_CDS: -0.99 Total: -76.57 kcal Atomic # 8 Polarization: -140.72 SS G_CDS: -3.81 Total: -144.53 kcal Atomic # 14 Polarization: 41.22 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 16 Polarization: 128.65 SS G_CDS: -0.24 Total: 128.41 kcal Total: -83.04 0.38 -82.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600939586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.522 kcal (2) G-P(sol) polarization free energy of solvation -83.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds