Wall clock time and date at job start Tue Mar 31 2020 22:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.87235 * 2 1 4 4 O 1.20821 * 119.99840 * 22.68729 * 3 2 1 5 5 O 1.34238 * 119.99876 * 202.68286 * 3 2 1 6 6 C 1.54317 * 109.88429 * 121.17699 * 2 1 3 7 7 C 1.55156 * 102.94382 * 97.22481 * 6 2 1 8 8 C 1.54694 * 101.67796 * 35.33507 * 7 6 2 9 9 N 1.47022 * 109.88233 * 238.98579 * 2 1 3 10 10 S 1.65602 * 125.64711 * 59.48926 * 9 2 1 11 11 O 1.42100 * 106.40318 * 162.51386 * 10 9 2 12 12 O 1.42094 * 106.40467 * 29.59021 * 10 9 2 13 13 C 1.76198 * 107.21613 * 276.05048 * 10 9 2 14 14 C 1.37642 * 120.12685 * 114.08963 * 13 10 9 15 15 C 1.38611 * 120.24695 * 180.02562 * 14 13 10 16 16 C 1.38650 * 120.50576 * 359.97438 * 15 14 13 17 17 C 1.37598 * 120.24553 * 0.02666 * 16 15 14 18 18 C 1.40698 * 120.12974 * 294.11091 * 13 10 9 19 19 C 1.41394 * 120.24565 * 359.96085 * 18 13 10 20 20 H 1.08000 * 119.99499 * 327.65659 * 19 18 13 21 21 C 1.39941 * 120.00372 * 147.66145 * 19 18 13 22 22 N 1.30820 * 119.99760 * 349.40817 * 21 19 18 23 23 Si 1.86800 * 119.99932 * 169.41385 * 21 19 18 24 24 H 1.48491 * 109.47293 * 4.89138 * 23 21 19 25 25 H 1.48495 * 109.47300 * 124.89824 * 23 21 19 26 26 H 1.48508 * 109.46674 * 244.89348 * 23 21 19 27 27 H 1.08999 * 109.47369 * 181.01004 * 1 2 3 28 28 H 1.09003 * 109.47083 * 301.01694 * 1 2 3 29 29 H 1.09001 * 109.47028 * 61.01345 * 1 2 3 30 30 H 0.96697 * 116.99617 * 174.98382 * 5 3 2 31 31 H 1.08999 * 110.72098 * 215.58895 * 6 2 1 32 32 H 1.09001 * 110.71918 * 338.68214 * 6 2 1 33 33 H 1.08997 * 111.01178 * 153.57793 * 7 6 2 34 34 H 1.09001 * 111.00609 * 277.39408 * 7 6 2 35 35 H 1.08997 * 110.39700 * 204.36694 * 8 7 6 36 36 H 1.09002 * 110.23104 * 82.11337 * 8 7 6 37 37 H 1.08003 * 119.87584 * 0.04524 * 14 13 10 38 38 H 1.08004 * 119.74951 * 180.02562 * 15 14 13 39 39 H 1.08003 * 119.87876 * 179.74379 * 16 15 14 40 40 H 1.08006 * 120.12354 * 179.97438 * 17 16 15 41 41 H 0.97004 * 119.99766 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 8 1.3397 2.3136 0.4036 5 8 3.2791 1.6839 -0.4483 6 6 2.0548 -0.7512 1.2416 7 6 2.3519 -2.1704 0.6893 8 6 2.8523 -1.8520 -0.7394 9 7 2.0300 -0.7124 -1.1849 10 16 1.7157 -0.3061 -2.7593 11 8 2.6925 -0.9716 -3.5481 12 8 1.5275 1.1022 -2.7804 13 6 0.1624 -1.0221 -3.1825 14 6 -0.9171 -0.2151 -3.4621 15 6 -2.1403 -0.7757 -3.7948 16 6 -2.2916 -2.1528 -3.8506 17 6 -1.2262 -2.9788 -3.5750 18 6 0.0205 -2.4209 -3.2356 19 6 1.1224 -3.2598 -2.9508 20 1 2.1235 -2.9389 -3.1981 21 6 0.9158 -4.5060 -2.3484 22 7 -0.2596 -4.8102 -1.8613 23 14 2.3185 -5.7349 -2.2400 24 1 3.5645 -5.1104 -2.7521 25 1 2.5133 -6.1401 -0.8247 26 1 1.9925 -6.9314 -3.0570 27 1 -0.3634 -1.0275 0.0181 28 1 -0.3633 0.5296 0.8807 29 1 -0.3633 0.4980 -0.8989 30 1 3.5366 2.6146 -0.4989 31 1 2.9656 -0.2854 1.6178 32 1 1.2928 -0.7891 2.0201 33 1 3.1270 -2.6637 1.2757 34 1 1.4453 -2.7748 0.6570 35 1 2.6997 -2.7091 -1.3952 36 1 3.9059 -1.5736 -0.7165 37 1 -0.8104 0.8589 -3.4224 38 1 -2.9819 -0.1349 -4.0131 39 1 -3.2504 -2.5788 -4.1069 40 1 -1.3463 -4.0513 -3.6186 41 1 -0.4028 -5.6741 -1.4441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600939592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:17 Heat of formation + Delta-G solvation = -141.994580 kcal Electronic energy + Delta-G solvation = -30013.298027 eV Core-core repulsion = 25984.857920 eV Total energy + Delta-G solvation = -4028.440107 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40880 -38.00713 -37.61927 -36.41524 -35.86180 -34.96377 -33.95643 -31.17782 -30.72151 -30.25860 -29.62536 -25.96992 -25.58678 -23.65007 -21.78200 -21.43439 -21.21238 -20.25292 -18.62402 -17.80223 -17.59155 -17.17885 -16.01267 -15.96089 -15.58554 -15.27215 -15.04062 -14.49903 -14.37889 -13.50891 -13.46726 -13.26879 -13.21684 -13.03564 -12.80328 -12.39943 -12.30983 -12.04548 -11.83466 -11.67803 -11.40181 -11.33409 -11.29087 -11.22842 -11.22389 -11.20250 -11.01450 -10.79232 -10.60945 -10.52838 -10.43163 -10.18823 -9.92030 -9.52466 -9.28424 -8.55970 -8.07108 -7.63110 -7.10591 -4.84527 1.33176 2.26763 2.43239 2.64834 2.92327 2.99876 3.01812 3.25037 3.70779 3.74442 4.32563 4.56889 4.65264 4.78295 4.95967 5.25163 5.35598 5.40524 5.47426 5.67304 5.80600 5.86004 5.97916 5.98798 6.04119 6.10435 6.17300 6.29517 6.35544 6.48896 6.53669 6.58785 6.72026 6.76862 6.82900 6.92958 7.06306 7.27245 7.44832 7.62601 7.73935 7.88080 8.16542 8.28630 8.45658 8.58139 9.83832 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.007244 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.783241 B = 3864.383105 C = 4942.325451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.197 3.803 3 C 0.483 3.517 4 O -0.513 6.513 5 O -0.507 6.507 6 C -0.112 4.112 7 C -0.126 4.126 8 C 0.113 3.887 9 N -0.985 5.985 10 S 2.715 3.285 11 O -0.965 6.965 12 O -0.990 6.990 13 C -0.772 4.772 14 C -0.004 4.004 15 C -0.242 4.242 16 C -0.076 4.076 17 C -0.153 4.153 18 C 0.198 3.802 19 C -0.481 4.481 20 H 0.116 0.884 21 C 0.083 3.917 22 N -0.778 5.778 23 Si 0.897 3.103 24 H -0.249 1.249 25 H -0.267 1.267 26 H -0.267 1.267 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.405 0.595 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.121 0.879 41 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.766 1.406 6.851 7.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.107 3.893 3 C 0.324 3.676 4 O -0.400 6.400 5 O -0.318 6.318 6 C -0.151 4.151 7 C -0.165 4.165 8 C -0.011 4.011 9 N -0.820 5.820 10 S 2.816 3.184 11 O -0.956 6.956 12 O -0.981 6.981 13 C -0.867 4.867 14 C -0.024 4.024 15 C -0.263 4.263 16 C -0.095 4.095 17 C -0.173 4.173 18 C 0.193 3.807 19 C -0.510 4.510 20 H 0.133 0.867 21 C -0.138 4.138 22 N -0.402 5.402 23 Si 0.720 3.280 24 H -0.172 1.172 25 H -0.192 1.192 26 H -0.192 1.192 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.125 0.875 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.139 0.861 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.934 1.601 6.520 7.782 hybrid contribution -0.213 -0.336 0.084 0.406 sum 3.721 1.265 6.604 7.685 Atomic orbital electron populations 1.22226 0.90620 1.04542 1.04037 1.20449 0.95351 0.84801 0.88707 1.23897 0.78769 0.92387 0.72574 1.90655 1.57224 1.47758 1.44393 1.84540 1.33250 1.35324 1.78656 1.22673 1.01666 0.96045 0.94729 1.22761 1.02637 0.95550 0.95566 1.22259 0.93500 0.89215 0.96159 1.58733 1.63323 1.39528 1.20433 1.00717 0.74652 0.72244 0.70825 1.93479 1.60191 1.75911 1.65981 1.93448 1.87838 1.30777 1.85990 1.29883 1.19790 1.04130 1.32929 1.20236 0.91994 0.97304 0.92888 1.20511 0.96829 0.94738 1.14205 1.20919 0.97380 0.93755 0.97419 1.21458 0.93441 0.99325 1.03067 1.16992 0.92910 0.88359 0.82447 1.20474 0.96361 1.00336 1.33808 0.86683 1.25937 0.96940 0.98167 0.92712 1.69789 1.23016 1.22230 1.25146 0.86390 0.82121 0.80267 0.79233 1.17157 1.19180 1.19224 0.89218 0.90441 0.91240 0.73735 0.90409 0.89273 0.90055 0.89495 0.87768 0.91988 0.87527 0.88628 0.88753 0.86122 0.90278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 7.72 37.16 0.29 -2.37 16 2 C 0.20 3.31 0.89 -132.00 -0.12 3.19 16 3 C 0.48 8.44 5.53 36.01 0.20 8.64 16 4 O -0.51 -9.84 16.84 -18.75 -0.32 -10.15 16 5 O -0.51 -7.79 13.03 -39.66 -0.52 -8.30 16 6 C -0.11 -1.44 6.01 -24.90 -0.15 -1.59 16 7 C -0.13 -1.69 7.07 -24.70 -0.17 -1.86 16 8 C 0.11 1.88 6.68 -2.65 -0.02 1.86 16 9 N -0.99 -18.53 2.87 -99.00 -0.28 -18.81 16 10 S 2.72 60.57 4.75 -107.50 -0.51 60.06 16 11 O -0.96 -23.50 15.14 -57.17 -0.87 -24.37 16 12 O -0.99 -22.86 15.15 -57.66 -0.87 -23.73 16 13 C -0.77 -18.05 5.36 -38.87 -0.21 -18.26 16 14 C 0.00 -0.10 8.80 -39.66 -0.35 -0.44 16 15 C -0.24 -5.17 10.05 -39.29 -0.39 -5.57 16 16 C -0.08 -1.64 10.02 -39.66 -0.40 -2.04 16 17 C -0.15 -3.62 8.64 -38.87 -0.34 -3.95 16 18 C 0.20 4.79 5.50 -106.83 -0.59 4.21 16 19 C -0.48 -11.30 6.17 -37.74 -0.23 -11.53 16 20 H 0.12 2.77 4.58 -52.49 -0.24 2.53 16 21 C 0.08 1.80 5.08 -17.34 -0.09 1.72 16 22 N -0.78 -17.09 11.09 55.55 0.62 -16.47 16 23 Si 0.90 16.39 29.03 -169.99 -4.94 11.46 16 24 H -0.25 -4.60 7.11 56.52 0.40 -4.20 16 25 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 26 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 27 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 28 H 0.08 1.16 7.87 -51.93 -0.41 0.75 16 29 H 0.07 1.32 6.74 -51.93 -0.35 0.97 16 30 H 0.40 4.40 9.10 45.56 0.41 4.82 16 31 H 0.08 0.89 7.85 -51.93 -0.41 0.48 16 32 H 0.09 0.98 7.83 -51.93 -0.41 0.57 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.10 1.92 4.28 -51.93 -0.22 1.70 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.11 2.27 7.32 -52.48 -0.38 1.88 16 38 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 39 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 40 H 0.12 2.87 6.50 -52.48 -0.34 2.53 16 41 H 0.29 5.69 8.30 -40.82 -0.34 5.35 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -29.79 341.80 -9.12 -38.90 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -4.02 Total: 14.28 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: -2.57 Total: -28.01 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.33 Total: -35.29 kcal Atomic # 8 Polarization: -63.99 SS G_CDS: -2.57 Total: -66.56 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -4.94 Total: 11.46 kcal Atomic # 16 Polarization: 60.57 SS G_CDS: -0.51 Total: 60.06 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.79 -9.12 -38.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600939592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.090 kcal (2) G-P(sol) polarization free energy of solvation -29.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds