Wall clock time and date at job start Tue Mar 31 2020 22:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.87235 * 2 1 4 4 O 1.20821 * 119.99840 * 22.68729 * 3 2 1 5 5 O 1.34238 * 119.99876 * 202.68286 * 3 2 1 6 6 C 1.54317 * 109.88429 * 121.17699 * 2 1 3 7 7 C 1.55156 * 102.94382 * 97.22481 * 6 2 1 8 8 C 1.54694 * 101.67796 * 35.33507 * 7 6 2 9 9 N 1.47022 * 109.88233 * 238.98579 * 2 1 3 10 10 S 1.65602 * 125.64711 * 59.48926 * 9 2 1 11 11 O 1.42100 * 106.40318 * 162.51386 * 10 9 2 12 12 O 1.42094 * 106.40467 * 29.59021 * 10 9 2 13 13 C 1.76198 * 107.21613 * 276.05048 * 10 9 2 14 14 C 1.37642 * 120.12685 * 114.08963 * 13 10 9 15 15 C 1.38611 * 120.24695 * 180.02562 * 14 13 10 16 16 C 1.38650 * 120.50576 * 359.97438 * 15 14 13 17 17 C 1.37598 * 120.24553 * 0.02666 * 16 15 14 18 18 C 1.40698 * 120.12974 * 294.11091 * 13 10 9 19 19 C 1.41394 * 120.24565 * 359.96085 * 18 13 10 20 20 H 1.08000 * 119.99499 * 327.65659 * 19 18 13 21 21 C 1.39941 * 120.00372 * 147.66145 * 19 18 13 22 22 N 1.30820 * 119.99760 * 349.40817 * 21 19 18 23 23 Si 1.86800 * 119.99932 * 169.41385 * 21 19 18 24 24 H 1.48491 * 109.47293 * 4.89138 * 23 21 19 25 25 H 1.48495 * 109.47300 * 124.89824 * 23 21 19 26 26 H 1.48508 * 109.46674 * 244.89348 * 23 21 19 27 27 H 1.08999 * 109.47369 * 181.01004 * 1 2 3 28 28 H 1.09003 * 109.47083 * 301.01694 * 1 2 3 29 29 H 1.09001 * 109.47028 * 61.01345 * 1 2 3 30 30 H 0.96697 * 116.99617 * 174.98382 * 5 3 2 31 31 H 1.08999 * 110.72098 * 215.58895 * 6 2 1 32 32 H 1.09001 * 110.71918 * 338.68214 * 6 2 1 33 33 H 1.08997 * 111.01178 * 153.57793 * 7 6 2 34 34 H 1.09001 * 111.00609 * 277.39408 * 7 6 2 35 35 H 1.08997 * 110.39700 * 204.36694 * 8 7 6 36 36 H 1.09002 * 110.23104 * 82.11337 * 8 7 6 37 37 H 1.08003 * 119.87584 * 0.04524 * 14 13 10 38 38 H 1.08004 * 119.74951 * 180.02562 * 15 14 13 39 39 H 1.08003 * 119.87876 * 179.74379 * 16 15 14 40 40 H 1.08006 * 120.12354 * 179.97438 * 17 16 15 41 41 H 0.97004 * 119.99766 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0422 1.4173 0.0000 4 8 1.3397 2.3136 0.4036 5 8 3.2791 1.6839 -0.4483 6 6 2.0548 -0.7512 1.2416 7 6 2.3519 -2.1704 0.6893 8 6 2.8523 -1.8520 -0.7394 9 7 2.0300 -0.7124 -1.1849 10 16 1.7157 -0.3061 -2.7593 11 8 2.6925 -0.9716 -3.5481 12 8 1.5275 1.1022 -2.7804 13 6 0.1624 -1.0221 -3.1825 14 6 -0.9171 -0.2151 -3.4621 15 6 -2.1403 -0.7757 -3.7948 16 6 -2.2916 -2.1528 -3.8506 17 6 -1.2262 -2.9788 -3.5750 18 6 0.0205 -2.4209 -3.2356 19 6 1.1224 -3.2598 -2.9508 20 1 2.1235 -2.9389 -3.1981 21 6 0.9158 -4.5060 -2.3484 22 7 -0.2596 -4.8102 -1.8613 23 14 2.3185 -5.7349 -2.2400 24 1 3.5645 -5.1104 -2.7521 25 1 2.5133 -6.1401 -0.8247 26 1 1.9925 -6.9314 -3.0570 27 1 -0.3634 -1.0275 0.0181 28 1 -0.3633 0.5296 0.8807 29 1 -0.3633 0.4980 -0.8989 30 1 3.5366 2.6146 -0.4989 31 1 2.9656 -0.2854 1.6178 32 1 1.2928 -0.7891 2.0201 33 1 3.1270 -2.6637 1.2757 34 1 1.4453 -2.7748 0.6570 35 1 2.6997 -2.7091 -1.3952 36 1 3.9059 -1.5736 -0.7165 37 1 -0.8104 0.8589 -3.4224 38 1 -2.9819 -0.1349 -4.0131 39 1 -3.2504 -2.5788 -4.1069 40 1 -1.3463 -4.0513 -3.6186 41 1 -0.4028 -5.6741 -1.4441 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600939592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:16 Heat of formation + Delta-G solvation = -161.680512 kcal Electronic energy + Delta-G solvation = -30014.151673 eV Core-core repulsion = 25984.857920 eV Total energy + Delta-G solvation = -4029.293753 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.72568 -39.47283 -39.16493 -38.20548 -37.17548 -36.77848 -35.64535 -32.48501 -32.12010 -31.84843 -31.35467 -27.40981 -27.15784 -24.94715 -23.47410 -22.93808 -22.68160 -21.58842 -20.05656 -19.50967 -19.16371 -18.64502 -17.71874 -17.40597 -17.05351 -16.74576 -16.44767 -16.07130 -15.94076 -15.18887 -14.98331 -14.74616 -14.59188 -14.43167 -14.33404 -13.75028 -13.67765 -13.59491 -13.33678 -13.14930 -13.03830 -12.99596 -12.90072 -12.83552 -12.70586 -12.55653 -12.47370 -12.36434 -12.12355 -11.86079 -11.65178 -11.61349 -11.44660 -11.14359 -11.00210 -10.02366 -9.78858 -9.39306 -8.74916 -6.59330 -0.34280 0.52436 0.97315 1.08790 1.43203 1.49520 1.56610 2.00695 2.18309 2.21118 2.64815 2.95477 3.31676 3.41475 3.59205 3.70706 3.93408 4.23082 4.28560 4.28809 4.47332 4.49243 4.51665 4.69713 4.74193 4.83142 4.90328 4.97908 5.03163 5.06161 5.15321 5.17924 5.24736 5.28921 5.40355 5.53452 5.53679 5.58635 5.71953 5.86358 5.99421 6.14407 6.52649 6.74088 6.83049 6.94293 8.22174 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011763 B = 0.007244 C = 0.005664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.783241 B = 3864.383105 C = 4942.325451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.186 3.814 3 C 0.483 3.517 4 O -0.536 6.536 5 O -0.507 6.507 6 C -0.103 4.103 7 C -0.116 4.116 8 C 0.099 3.901 9 N -0.984 5.984 10 S 2.726 3.274 11 O -0.994 6.994 12 O -1.005 7.005 13 C -0.789 4.789 14 C -0.017 4.017 15 C -0.246 4.246 16 C -0.075 4.075 17 C -0.177 4.177 18 C 0.174 3.826 19 C -0.496 4.496 20 H 0.103 0.897 21 C 0.060 3.940 22 N -0.795 5.795 23 Si 0.949 3.051 24 H -0.257 1.257 25 H -0.242 1.242 26 H -0.267 1.267 27 H 0.084 0.916 28 H 0.096 0.904 29 H 0.042 0.958 30 H 0.423 0.577 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.118 0.882 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.285 0.691 8.745 9.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.097 3.903 3 C 0.325 3.675 4 O -0.425 6.425 5 O -0.320 6.320 6 C -0.142 4.142 7 C -0.154 4.154 8 C -0.025 4.025 9 N -0.822 5.822 10 S 2.826 3.174 11 O -0.985 6.985 12 O -0.996 6.996 13 C -0.883 4.883 14 C -0.037 4.037 15 C -0.266 4.266 16 C -0.093 4.093 17 C -0.197 4.197 18 C 0.170 3.830 19 C -0.524 4.524 20 H 0.121 0.879 21 C -0.160 4.160 22 N -0.418 5.418 23 Si 0.769 3.231 24 H -0.180 1.180 25 H -0.165 1.165 26 H -0.192 1.192 27 H 0.103 0.897 28 H 0.115 0.885 29 H 0.061 0.939 30 H 0.284 0.716 31 H 0.117 0.883 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.130 0.870 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.447 0.899 8.405 9.551 hybrid contribution -0.391 -0.067 -0.521 0.655 sum 4.055 0.832 7.884 8.905 Atomic orbital electron populations 1.22197 0.91286 1.04072 1.03619 1.20764 0.95082 0.84963 0.89537 1.24013 0.79007 0.92419 0.72107 1.90643 1.57877 1.48370 1.45613 1.84495 1.32292 1.37163 1.78019 1.22765 1.03224 0.94915 0.93253 1.22746 1.03072 0.95915 0.93714 1.22517 0.94313 0.87890 0.97788 1.58424 1.63506 1.40465 1.19780 1.00135 0.74008 0.71667 0.71565 1.93432 1.60975 1.76328 1.67716 1.93414 1.87915 1.31579 1.86689 1.30085 1.20513 1.04161 1.33585 1.20455 0.92517 0.97600 0.93108 1.20850 0.97311 0.95115 1.13299 1.21230 0.98046 0.93845 0.96201 1.21502 0.94198 0.99226 1.04747 1.17267 0.93627 0.88944 0.83197 1.20472 0.95580 1.01549 1.34819 0.87940 1.26489 0.98930 0.98758 0.91802 1.69797 1.24213 1.23025 1.24785 0.85624 0.79079 0.77911 0.80473 1.18016 1.16545 1.19227 0.89722 0.88487 0.93904 0.71596 0.88260 0.86921 0.86362 0.90808 0.89825 0.90226 0.87090 0.85785 0.85910 0.86950 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 7.72 71.98 0.56 -4.60 16 2 C 0.19 6.00 0.89 3.20 0.00 6.00 16 3 C 0.48 16.26 5.53 71.24 0.39 16.66 16 4 O -0.54 -20.01 16.84 21.98 0.37 -19.64 16 5 O -0.51 -14.84 13.03 -51.13 -0.67 -15.51 16 6 C -0.10 -2.32 6.01 31.78 0.19 -2.13 16 7 C -0.12 -2.76 7.07 31.91 0.23 -2.53 16 8 C 0.10 3.16 6.68 86.78 0.58 3.74 16 9 N -0.98 -36.63 2.87 -467.14 -1.34 -37.97 16 10 S 2.73 124.03 4.75 -56.49 -0.27 123.76 16 11 O -0.99 -49.83 15.14 -128.00 -1.94 -51.77 16 12 O -1.01 -47.27 15.15 -127.53 -1.93 -49.20 16 13 C -0.79 -37.79 5.36 22.73 0.12 -37.67 16 14 C -0.02 -0.77 8.80 22.22 0.20 -0.57 16 15 C -0.25 -10.34 10.05 22.46 0.23 -10.11 16 16 C -0.07 -3.19 10.02 22.22 0.22 -2.97 16 17 C -0.18 -8.48 8.64 22.73 0.20 -8.28 16 18 C 0.17 8.65 5.50 -21.29 -0.12 8.53 16 19 C -0.50 -23.75 6.17 23.46 0.14 -23.60 16 20 H 0.10 5.10 4.58 -2.91 -0.01 5.09 16 21 C 0.06 2.59 5.08 85.26 0.43 3.02 16 22 N -0.79 -34.66 11.09 21.82 0.24 -34.42 16 23 Si 0.95 32.75 29.03 68.60 1.99 34.74 16 24 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 25 H -0.24 -7.36 7.11 99.48 0.71 -6.65 16 26 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 27 H 0.08 2.88 8.14 -2.39 -0.02 2.86 16 28 H 0.10 2.79 7.87 -2.39 -0.02 2.77 16 29 H 0.04 1.65 6.74 -2.39 -0.02 1.63 16 30 H 0.42 8.60 9.10 -74.06 -0.67 7.93 16 31 H 0.10 1.86 7.85 -2.39 -0.02 1.84 16 32 H 0.11 2.05 7.83 -2.39 -0.02 2.03 16 33 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 3.06 4.28 -2.39 -0.01 3.05 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.11 4.82 7.32 -2.91 -0.02 4.80 16 38 H 0.12 4.42 8.06 -2.91 -0.02 4.39 16 39 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.11 5.46 6.50 -2.91 -0.02 5.44 16 41 H 0.30 11.51 8.30 -92.71 -0.77 10.74 16 Total: -1.00 -65.24 341.80 0.25 -64.99 By element: Atomic # 1 Polarization: 39.12 SS G_CDS: 0.42 Total: 39.54 kcal Atomic # 6 Polarization: -57.90 SS G_CDS: 3.37 Total: -54.53 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.10 Total: -72.39 kcal Atomic # 8 Polarization: -131.95 SS G_CDS: -4.17 Total: -136.12 kcal Atomic # 14 Polarization: 32.75 SS G_CDS: 1.99 Total: 34.74 kcal Atomic # 16 Polarization: 124.03 SS G_CDS: -0.27 Total: 123.76 kcal Total: -65.24 0.25 -64.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600939592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.689 kcal (2) G-P(sol) polarization free energy of solvation -65.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds