Wall clock time and date at job start Tue Mar 31 2020 22:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86807 * 120.00048 * 2 1 4 4 H 1.48493 * 109.47049 * 269.99879 * 3 2 1 5 5 H 1.48501 * 109.46814 * 29.99916 * 3 2 1 6 6 H 1.48495 * 109.47081 * 149.99651 * 3 2 1 7 7 C 1.39940 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00224 * 183.62798 * 7 2 1 9 9 C 1.41398 * 120.00083 * 3.63346 * 7 2 1 10 10 C 1.40741 * 120.24096 * 324.31139 * 9 7 2 11 11 C 1.37598 * 119.74204 * 179.97438 * 10 9 7 12 12 C 1.38648 * 120.25108 * 359.97438 * 11 10 9 13 13 C 1.38613 * 120.50309 * 0.02562 * 12 11 10 14 14 C 1.37639 * 120.24779 * 359.97438 * 13 12 11 15 15 S 1.76206 * 120.12850 * 180.02562 * 14 13 12 16 16 O 1.42094 * 106.39833 * 227.39420 * 15 14 13 17 17 O 1.42097 * 106.39916 * 0.31574 * 15 14 13 18 18 N 1.65598 * 107.21775 * 113.85875 * 15 14 13 19 19 C 1.46505 * 119.99810 * 277.73875 * 18 15 14 20 20 C 1.50706 * 109.46904 * 94.99938 * 19 18 15 21 21 O 1.20821 * 120.00131 * 0.02562 * 20 19 18 22 22 O 1.34228 * 119.99822 * 179.97438 * 20 19 18 23 23 C 1.46495 * 120.00208 * 97.74346 * 18 15 14 24 24 C 1.52996 * 109.47395 * 99.14877 * 23 18 15 25 25 C 1.53004 * 117.49659 * 243.74849 * 24 23 18 26 26 C 1.52999 * 117.50398 * 175.08980 * 24 23 18 27 27 H 0.97004 * 119.99737 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.12502 * 0.25642 * 10 9 7 29 29 H 1.07994 * 119.87013 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.75144 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.88201 * 180.02562 * 13 12 11 32 32 H 1.08998 * 109.47197 * 215.00302 * 19 18 15 33 33 H 1.09000 * 109.47304 * 335.00705 * 19 18 15 34 34 H 0.96700 * 117.00009 * 180.02562 * 22 20 19 35 35 H 1.09001 * 109.47013 * 219.14493 * 23 18 15 36 36 H 1.08997 * 109.47051 * 339.13996 * 23 18 15 37 37 H 1.09007 * 115.54973 * 29.40929 * 24 23 18 38 38 H 1.09000 * 117.49945 * 359.97438 * 25 24 23 39 39 H 1.09007 * 117.49842 * 145.01726 * 25 24 23 40 40 H 1.08993 * 117.50092 * 214.97996 * 26 24 23 41 41 H 1.09005 * 117.49465 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0863 -1.2128 0.0597 9 6 1.3031 -2.4353 -0.0765 10 6 0.0565 -2.5765 0.5612 11 6 -0.6208 -3.7714 0.4792 12 6 -0.0799 -4.8337 -0.2288 13 6 1.1471 -4.7059 -0.8609 14 6 1.8423 -3.5200 -0.7922 15 16 3.4015 -3.3609 -1.5974 16 8 4.2835 -2.7727 -0.6512 17 8 3.6570 -4.6088 -2.2271 18 7 3.2142 -2.2528 -2.8137 19 6 2.6520 -2.6669 -4.1016 20 6 1.1698 -2.3948 -4.1134 21 8 0.6378 -1.9048 -3.1456 22 8 0.4408 -2.6959 -5.1996 23 6 3.6108 -0.8586 -2.6019 24 6 4.9917 -0.6221 -3.2167 25 6 6.1327 -0.2486 -2.2683 26 6 5.5363 0.8076 -3.2019 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3689 -1.7487 1.1091 29 1 -1.5774 -3.8821 0.9681 30 1 -0.6183 -5.7681 -0.2877 31 1 1.5589 -5.5398 -1.4100 32 1 3.1308 -2.1061 -4.9043 33 1 2.8268 -3.7328 -4.2486 34 1 -0.5059 -2.5028 -5.1603 35 1 2.8844 -0.1982 -3.0756 36 1 3.6485 -0.6499 -1.5328 37 1 5.2361 -1.2449 -4.0774 38 1 5.8995 -0.1710 -1.2063 39 1 7.1278 -0.6253 -2.5051 40 1 6.1391 1.1254 -4.0526 41 1 4.9105 1.5799 -2.7545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600939603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:57 Heat of formation + Delta-G solvation = -107.816973 kcal Electronic energy + Delta-G solvation = -29686.619950 eV Core-core repulsion = 25659.661895 eV Total energy + Delta-G solvation = -4026.958055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.72970 -37.70298 -37.48063 -36.40705 -35.74199 -34.96020 -34.61945 -33.74097 -30.15338 -29.49239 -28.70726 -25.62768 -25.23224 -22.13415 -21.79311 -21.30580 -21.06458 -20.31119 -18.23453 -17.70815 -17.51620 -17.24208 -16.35027 -16.12696 -15.53050 -15.32491 -15.19736 -14.78072 -14.36512 -14.06659 -13.87715 -13.24169 -13.14729 -12.80295 -12.72068 -12.57458 -12.12535 -11.93866 -11.65955 -11.33370 -11.30081 -11.23686 -11.20090 -11.16596 -11.13512 -11.00501 -10.88538 -10.53026 -10.48013 -10.26689 -10.06179 -9.86193 -9.63751 -9.41260 -9.14707 -8.63980 -7.94531 -7.40924 -6.85832 -4.70279 1.37931 2.39867 2.72436 2.77358 2.96469 3.02190 3.10887 3.25709 3.76053 3.80749 4.07400 4.51216 4.67973 4.93543 5.04822 5.13380 5.23164 5.29235 5.46135 5.50588 5.59463 5.67935 5.82170 5.82745 6.05947 6.10254 6.19702 6.28446 6.35191 6.41390 6.42752 6.61921 6.84604 6.93959 6.96828 7.07606 7.20791 7.42580 7.56355 7.82040 7.87543 8.01991 8.37589 8.43935 8.63736 8.76043 10.05146 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009533 B = 0.007931 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.453952 B = 3529.487306 C = 4484.536841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.087 3.913 3 Si 0.893 3.107 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.482 4.482 8 H 0.112 0.888 9 C 0.211 3.789 10 C -0.148 4.148 11 C -0.081 4.081 12 C -0.242 4.242 13 C -0.012 4.012 14 C -0.760 4.760 15 S 2.699 3.301 16 O -0.961 6.961 17 O -0.996 6.996 18 N -0.969 5.969 19 C 0.133 3.867 20 C 0.429 3.571 21 O -0.451 6.451 22 O -0.530 6.530 23 C 0.149 3.851 24 C -0.176 4.176 25 C -0.174 4.174 26 C -0.181 4.181 27 H 0.281 0.719 28 H 0.130 0.870 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.404 0.596 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.694 1.636 -8.401 9.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.133 4.133 3 Si 0.716 3.284 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.175 1.175 7 C -0.510 4.510 8 H 0.129 0.871 9 C 0.206 3.794 10 C -0.168 4.168 11 C -0.100 4.100 12 C -0.262 4.262 13 C -0.032 4.032 14 C -0.856 4.856 15 S 2.799 3.201 16 O -0.952 6.952 17 O -0.987 6.987 18 N -0.801 5.801 19 C 0.005 3.995 20 C 0.265 3.735 21 O -0.333 6.333 22 O -0.343 6.343 23 C 0.024 3.976 24 C -0.196 4.196 25 C -0.211 4.211 26 C -0.219 4.219 27 H 0.093 0.907 28 H 0.147 0.853 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.122 0.878 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.262 0.738 35 H 0.093 0.907 36 H 0.131 0.869 37 H 0.124 0.876 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.110 0.890 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 4.578 1.451 -7.947 9.285 hybrid contribution -1.480 1.061 0.000 1.822 sum 3.098 2.513 -7.947 8.892 Atomic orbital electron populations 1.69747 1.07488 1.29245 1.33882 1.25843 0.94769 1.01040 0.91678 0.86541 0.81194 0.80651 0.80016 1.18527 1.19903 1.17470 1.20324 0.96600 0.90056 1.44069 0.87080 1.16900 0.90492 0.88991 0.82996 1.21712 0.97249 0.96084 1.01778 1.20927 0.97554 0.94182 0.97309 1.20475 0.98239 0.98634 1.08859 1.20199 0.93567 0.94492 0.94963 1.29761 1.26377 1.04114 1.25331 1.01242 0.75072 0.71315 0.72482 1.93484 1.64364 1.77362 1.59966 1.93434 1.86023 1.42326 1.76881 1.57354 1.75452 1.22317 1.25009 1.20609 0.86402 1.04033 0.88497 1.24432 0.91669 0.76750 0.80649 1.90990 1.72060 1.36799 1.33424 1.84482 1.26482 1.80003 1.43286 1.21197 0.91952 0.80973 1.03512 1.22910 0.96146 0.98385 1.02152 1.23091 0.97535 1.02640 0.97866 1.22944 1.04160 0.92239 1.02577 0.90737 0.85265 0.89030 0.88935 0.87787 0.86600 0.85650 0.73788 0.90664 0.86927 0.87622 0.87847 0.89032 0.88994 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.04 10.69 55.55 0.59 -18.45 16 2 C 0.09 2.06 5.41 -17.34 -0.09 1.96 16 3 Si 0.89 17.71 28.66 -169.99 -4.87 12.84 16 4 H -0.26 -4.89 7.11 56.52 0.40 -4.48 16 5 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 6 H -0.25 -4.92 7.11 56.52 0.40 -4.52 16 7 C -0.48 -11.98 6.33 -37.74 -0.24 -12.22 16 8 H 0.11 2.76 4.27 -52.49 -0.22 2.54 16 9 C 0.21 5.40 5.36 -106.82 -0.57 4.83 16 10 C -0.15 -3.77 8.67 -38.87 -0.34 -4.10 16 11 C -0.08 -1.87 10.02 -39.66 -0.40 -2.27 16 12 C -0.24 -5.43 10.05 -39.29 -0.39 -5.82 16 13 C -0.01 -0.28 9.54 -39.66 -0.38 -0.66 16 14 C -0.76 -18.37 5.35 -38.87 -0.21 -18.58 16 15 S 2.70 58.94 5.09 -107.50 -0.55 58.39 16 16 O -0.96 -22.59 14.51 -57.17 -0.83 -23.42 16 17 O -1.00 -22.05 15.70 -57.17 -0.90 -22.94 16 18 N -0.97 -17.73 2.27 -115.66 -0.26 -17.99 16 19 C 0.13 2.00 6.27 -5.19 -0.03 1.96 16 20 C 0.43 7.16 8.39 36.01 0.30 7.46 16 21 O -0.45 -9.61 16.38 -18.75 -0.31 -9.92 16 22 O -0.53 -7.03 13.42 -39.25 -0.53 -7.55 16 23 C 0.15 2.63 5.10 -4.05 -0.02 2.61 16 24 C -0.18 -2.56 5.97 -90.62 -0.54 -3.10 16 25 C -0.17 -2.49 10.18 -26.69 -0.27 -2.76 16 26 C -0.18 -2.32 10.25 -26.69 -0.27 -2.59 16 27 H 0.28 6.32 8.30 -40.82 -0.34 5.99 16 28 H 0.13 3.34 6.24 -52.49 -0.33 3.01 16 29 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 30 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.10 2.22 7.32 -52.48 -0.38 1.84 16 32 H 0.12 1.28 8.11 -51.93 -0.42 0.86 16 33 H 0.13 1.76 7.03 -51.93 -0.37 1.39 16 34 H 0.40 4.03 9.10 45.56 0.41 4.45 16 35 H 0.08 1.31 8.13 -51.93 -0.42 0.88 16 36 H 0.11 2.26 3.21 -51.93 -0.17 2.09 16 37 H 0.11 1.34 8.14 -51.92 -0.42 0.92 16 38 H 0.10 1.63 8.03 -51.93 -0.42 1.22 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -31.10 353.37 -9.77 -40.87 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -3.98 Total: 16.13 kcal Atomic # 6 Polarization: -29.82 SS G_CDS: -3.46 Total: -33.28 kcal Atomic # 7 Polarization: -36.77 SS G_CDS: 0.33 Total: -36.44 kcal Atomic # 8 Polarization: -61.28 SS G_CDS: -2.56 Total: -63.84 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -4.87 Total: 12.84 kcal Atomic # 16 Polarization: 58.94 SS G_CDS: -0.55 Total: 58.39 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.10 -9.77 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600939603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.946 kcal (2) G-P(sol) polarization free energy of solvation -31.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds