Wall clock time and date at job start Tue Mar 31 2020 22:02:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86807 * 120.00048 * 2 1 4 4 H 1.48493 * 109.47049 * 269.99879 * 3 2 1 5 5 H 1.48501 * 109.46814 * 29.99916 * 3 2 1 6 6 H 1.48495 * 109.47081 * 149.99651 * 3 2 1 7 7 C 1.39940 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00224 * 183.62798 * 7 2 1 9 9 C 1.41398 * 120.00083 * 3.63346 * 7 2 1 10 10 C 1.40741 * 120.24096 * 324.31139 * 9 7 2 11 11 C 1.37598 * 119.74204 * 179.97438 * 10 9 7 12 12 C 1.38648 * 120.25108 * 359.97438 * 11 10 9 13 13 C 1.38613 * 120.50309 * 0.02562 * 12 11 10 14 14 C 1.37639 * 120.24779 * 359.97438 * 13 12 11 15 15 S 1.76206 * 120.12850 * 180.02562 * 14 13 12 16 16 O 1.42094 * 106.39833 * 227.39420 * 15 14 13 17 17 O 1.42097 * 106.39916 * 0.31574 * 15 14 13 18 18 N 1.65598 * 107.21775 * 113.85875 * 15 14 13 19 19 C 1.46505 * 119.99810 * 277.73875 * 18 15 14 20 20 C 1.50706 * 109.46904 * 94.99938 * 19 18 15 21 21 O 1.20821 * 120.00131 * 0.02562 * 20 19 18 22 22 O 1.34228 * 119.99822 * 179.97438 * 20 19 18 23 23 C 1.46495 * 120.00208 * 97.74346 * 18 15 14 24 24 C 1.52996 * 109.47395 * 99.14877 * 23 18 15 25 25 C 1.53004 * 117.49659 * 243.74849 * 24 23 18 26 26 C 1.52999 * 117.50398 * 175.08980 * 24 23 18 27 27 H 0.97004 * 119.99737 * 0.02562 * 1 2 3 28 28 H 1.07994 * 120.12502 * 0.25642 * 10 9 7 29 29 H 1.07994 * 119.87013 * 179.97438 * 11 10 9 30 30 H 1.08001 * 119.75144 * 179.97438 * 12 11 10 31 31 H 1.08003 * 119.88201 * 180.02562 * 13 12 11 32 32 H 1.08998 * 109.47197 * 215.00302 * 19 18 15 33 33 H 1.09000 * 109.47304 * 335.00705 * 19 18 15 34 34 H 0.96700 * 117.00009 * 180.02562 * 22 20 19 35 35 H 1.09001 * 109.47013 * 219.14493 * 23 18 15 36 36 H 1.08997 * 109.47051 * 339.13996 * 23 18 15 37 37 H 1.09007 * 115.54973 * 29.40929 * 24 23 18 38 38 H 1.09000 * 117.49945 * 359.97438 * 25 24 23 39 39 H 1.09007 * 117.49842 * 145.01726 * 25 24 23 40 40 H 1.08993 * 117.50092 * 214.97996 * 26 24 23 41 41 H 1.09005 * 117.49465 * 359.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4898 2.0464 -1.4000 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4402 0.7001 7 6 2.0079 -1.2119 0.0005 8 1 3.0863 -1.2128 0.0597 9 6 1.3031 -2.4353 -0.0765 10 6 0.0565 -2.5765 0.5612 11 6 -0.6208 -3.7714 0.4792 12 6 -0.0799 -4.8337 -0.2288 13 6 1.1471 -4.7059 -0.8609 14 6 1.8423 -3.5200 -0.7922 15 16 3.4015 -3.3609 -1.5974 16 8 4.2835 -2.7727 -0.6512 17 8 3.6570 -4.6088 -2.2271 18 7 3.2142 -2.2528 -2.8137 19 6 2.6520 -2.6669 -4.1016 20 6 1.1698 -2.3948 -4.1134 21 8 0.6378 -1.9048 -3.1456 22 8 0.4408 -2.6959 -5.1996 23 6 3.6108 -0.8586 -2.6019 24 6 4.9917 -0.6221 -3.2167 25 6 6.1327 -0.2486 -2.2683 26 6 5.5363 0.8076 -3.2019 27 1 -0.4850 0.8401 -0.0004 28 1 -0.3689 -1.7487 1.1091 29 1 -1.5774 -3.8821 0.9681 30 1 -0.6183 -5.7681 -0.2877 31 1 1.5589 -5.5398 -1.4100 32 1 3.1308 -2.1061 -4.9043 33 1 2.8268 -3.7328 -4.2486 34 1 -0.5059 -2.5028 -5.1603 35 1 2.8844 -0.1982 -3.0756 36 1 3.6485 -0.6499 -1.5328 37 1 5.2361 -1.2449 -4.0774 38 1 5.8995 -0.1710 -1.2063 39 1 7.1278 -0.6253 -2.5051 40 1 6.1391 1.1254 -4.0526 41 1 4.9105 1.5799 -2.7545 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600939603.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:56 Heat of formation + Delta-G solvation = -128.101336 kcal Electronic energy + Delta-G solvation = -29687.499546 eV Core-core repulsion = 25659.661895 eV Total energy + Delta-G solvation = -4027.837651 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02904 -39.34184 -38.85181 -38.11399 -36.97353 -36.71367 -35.96559 -35.51739 -31.96689 -31.31468 -29.98089 -27.33828 -26.68020 -23.48132 -23.16725 -22.88800 -22.64174 -21.52701 -19.80855 -19.39241 -18.95898 -18.74870 -17.84850 -17.59831 -17.04998 -16.94911 -16.47326 -16.16281 -16.02328 -15.54119 -15.15083 -14.98415 -14.88165 -14.45623 -14.13131 -13.90047 -13.70578 -13.54501 -13.04841 -12.97875 -12.94603 -12.90674 -12.82990 -12.64248 -12.58094 -12.31859 -12.25181 -12.18945 -12.13931 -11.66789 -11.55611 -11.21762 -11.19633 -10.92423 -10.73598 -10.08206 -9.74624 -9.25688 -8.63329 -6.55989 -0.27133 0.57986 1.02267 1.32786 1.43060 1.45076 1.45462 1.93449 2.15487 2.40923 2.71377 2.94043 3.00104 3.47996 3.61980 3.84274 3.92666 4.08905 4.21653 4.29378 4.31831 4.43696 4.48580 4.52820 4.59986 4.71417 4.85099 4.95590 5.00751 5.04345 5.11591 5.24072 5.33791 5.35125 5.43110 5.59428 5.63451 5.74542 5.81821 5.96589 6.03072 6.19025 6.58447 6.80874 6.92299 7.18872 8.29710 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009533 B = 0.007931 C = 0.006242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2936.453952 B = 3529.487306 C = 4484.536841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.056 3.944 3 Si 0.940 3.060 4 H -0.242 1.242 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.496 4.496 8 H 0.104 0.896 9 C 0.188 3.812 10 C -0.180 4.180 11 C -0.083 4.083 12 C -0.246 4.246 13 C -0.025 4.025 14 C -0.778 4.778 15 S 2.715 3.285 16 O -0.985 6.985 17 O -1.000 7.000 18 N -0.964 5.964 19 C 0.124 3.876 20 C 0.434 3.566 21 O -0.505 6.505 22 O -0.516 6.516 23 C 0.146 3.854 24 C -0.184 4.184 25 C -0.190 4.190 26 C -0.161 4.161 27 H 0.286 0.714 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.124 0.876 31 H 0.120 0.880 32 H 0.164 0.836 33 H 0.139 0.861 34 H 0.419 0.581 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.131 0.869 38 H 0.078 0.922 39 H 0.110 0.890 40 H 0.123 0.877 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.633 1.865 -10.800 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.161 4.161 3 Si 0.759 3.241 4 H -0.165 1.165 5 H -0.192 1.192 6 H -0.176 1.176 7 C -0.525 4.525 8 H 0.122 0.878 9 C 0.184 3.816 10 C -0.200 4.200 11 C -0.101 4.101 12 C -0.266 4.266 13 C -0.045 4.045 14 C -0.871 4.871 15 S 2.813 3.187 16 O -0.975 6.975 17 O -0.991 6.991 18 N -0.799 5.799 19 C -0.003 4.003 20 C 0.273 3.727 21 O -0.391 6.391 22 O -0.329 6.329 23 C 0.022 3.978 24 C -0.203 4.203 25 C -0.227 4.227 26 C -0.198 4.198 27 H 0.097 0.903 28 H 0.132 0.868 29 H 0.134 0.866 30 H 0.142 0.858 31 H 0.138 0.862 32 H 0.182 0.818 33 H 0.156 0.844 34 H 0.280 0.720 35 H 0.093 0.907 36 H 0.103 0.897 37 H 0.149 0.851 38 H 0.096 0.904 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.481 1.651 -10.359 11.835 hybrid contribution -1.832 0.898 0.672 2.148 sum 3.649 2.549 -9.687 10.660 Atomic orbital electron populations 1.69814 1.08654 1.30149 1.34522 1.26498 0.95328 1.03488 0.90833 0.85837 0.79964 0.77174 0.81085 1.16504 1.19168 1.17593 1.20353 0.96242 0.90685 1.45185 0.87846 1.17164 0.90979 0.89873 0.83601 1.21742 0.98255 0.96801 1.03227 1.21234 0.98302 0.93598 0.96985 1.20849 0.98244 0.99587 1.07888 1.20545 0.94040 0.94745 0.95159 1.30223 1.27331 1.04061 1.25483 1.00695 0.73998 0.71513 0.72531 1.93447 1.64789 1.77811 1.61468 1.93416 1.85825 1.42995 1.76878 1.57039 1.75578 1.22019 1.25215 1.21073 0.85619 1.05577 0.88042 1.24741 0.92416 0.75296 0.80235 1.91000 1.73152 1.39521 1.35407 1.84439 1.27713 1.79149 1.41592 1.21175 0.94009 0.80367 1.02279 1.22899 0.94156 1.00466 1.02823 1.23139 0.98456 1.04294 0.96806 1.23043 1.03175 0.90985 1.02612 0.90304 0.86768 0.86575 0.85803 0.86170 0.81843 0.84389 0.72017 0.90721 0.89693 0.85113 0.90365 0.87143 0.85878 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.68 10.69 21.82 0.23 -40.45 16 2 C 0.06 2.73 5.41 85.26 0.46 3.19 16 3 Si 0.94 36.56 28.66 68.60 1.97 38.52 16 4 H -0.24 -8.55 7.11 99.48 0.71 -7.85 16 5 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 6 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 7 C -0.50 -25.54 6.33 23.46 0.15 -25.39 16 8 H 0.10 5.38 4.27 -2.91 -0.01 5.37 16 9 C 0.19 9.95 5.36 -21.29 -0.11 9.83 16 10 C -0.18 -9.46 8.67 22.73 0.20 -9.26 16 11 C -0.08 -3.84 10.02 22.22 0.22 -3.61 16 12 C -0.25 -10.83 10.05 22.46 0.23 -10.61 16 13 C -0.03 -1.16 9.54 22.22 0.21 -0.95 16 14 C -0.78 -38.06 5.35 22.73 0.12 -37.94 16 15 S 2.72 118.18 5.09 -56.49 -0.29 117.90 16 16 O -0.98 -47.17 14.51 -128.00 -1.86 -49.02 16 17 O -1.00 -43.22 15.70 -128.00 -2.01 -45.23 16 18 N -0.96 -34.14 2.27 -519.85 -1.18 -35.32 16 19 C 0.12 3.40 6.27 85.63 0.54 3.94 16 20 C 0.43 13.82 8.39 71.24 0.60 14.42 16 21 O -0.50 -21.54 16.38 21.98 0.36 -21.18 16 22 O -0.52 -12.45 13.42 -51.40 -0.69 -13.14 16 23 C 0.15 5.04 5.10 86.38 0.44 5.48 16 24 C -0.18 -4.88 5.97 -10.79 -0.06 -4.95 16 25 C -0.19 -5.11 10.18 30.62 0.31 -4.80 16 26 C -0.16 -3.61 10.25 30.62 0.31 -3.30 16 27 H 0.29 13.22 8.30 -92.71 -0.77 12.45 16 28 H 0.11 6.21 6.24 -2.91 -0.02 6.19 16 29 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 30 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 31 H 0.12 5.01 7.32 -2.91 -0.02 4.99 16 32 H 0.16 2.91 8.11 -2.39 -0.02 2.89 16 33 H 0.14 3.48 7.03 -2.39 -0.02 3.46 16 34 H 0.42 7.56 9.10 -74.06 -0.67 6.89 16 35 H 0.07 2.52 8.13 -2.39 -0.02 2.50 16 36 H 0.09 3.44 3.21 -2.39 -0.01 3.44 16 37 H 0.13 2.79 8.14 -2.38 -0.02 2.77 16 38 H 0.08 2.49 8.03 -2.39 -0.02 2.47 16 39 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 Total: -1.00 -69.47 353.37 0.56 -68.90 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: 0.42 Total: 42.97 kcal Atomic # 6 Polarization: -67.57 SS G_CDS: 3.61 Total: -63.95 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -0.95 Total: -75.77 kcal Atomic # 8 Polarization: -124.38 SS G_CDS: -4.20 Total: -128.57 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 1.97 Total: 38.52 kcal Atomic # 16 Polarization: 118.18 SS G_CDS: -0.29 Total: 117.90 kcal Total: -69.47 0.56 -68.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600939603.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.198 kcal (2) G-P(sol) polarization free energy of solvation -69.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds