Wall clock time and date at job start Tue Mar 31 2020 21:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48496 * 109.47181 * 90.00192 * 3 2 1 5 5 H 1.48502 * 109.47089 * 329.99883 * 3 2 1 6 6 H 1.48499 * 109.46876 * 210.00119 * 3 2 1 7 7 C 1.38817 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 165.23339 * 7 2 1 9 9 N 1.36937 * 120.00082 * 345.22808 * 7 2 1 10 10 C 1.46504 * 120.00053 * 308.81753 * 9 7 2 11 11 C 1.52993 * 117.49951 * 2.58086 * 10 9 7 12 12 C 1.52998 * 117.49644 * 293.95732 * 10 9 7 13 13 S 1.65597 * 119.99783 * 128.81578 * 9 7 2 14 14 O 1.42095 * 104.27928 * 206.07132 * 13 9 7 15 15 O 1.42099 * 104.28046 * 333.93165 * 13 9 7 16 16 C 1.81407 * 104.44818 * 89.99933 * 13 9 7 17 17 C 1.52996 * 109.46981 * 179.97438 * 16 13 9 18 18 H 1.08993 * 109.70928 * 304.42336 * 17 16 13 19 19 C 1.53470 * 109.70843 * 183.79994 * 17 16 13 20 20 O 1.43166 * 108.24043 * 180.57094 * 19 17 16 21 21 C 1.36113 * 116.69051 * 46.25107 * 20 19 17 22 22 C 1.38700 * 119.38468 * 162.81451 * 21 20 19 23 23 C 1.38202 * 120.06526 * 179.81449 * 22 21 20 24 24 C 1.38253 * 120.11001 * 0.02562 * 23 22 21 25 25 C 1.38201 * 120.11428 * 0.05340 * 24 23 22 26 26 C 1.38705 * 120.06433 * 359.97438 * 25 24 23 27 27 O 1.36111 * 119.39389 * 179.84459 * 26 25 24 28 28 H 0.96994 * 120.00162 * 174.55046 * 1 2 3 29 29 H 1.08995 * 115.54495 * 148.28692 * 10 9 7 30 30 H 1.09007 * 117.49888 * 359.97438 * 11 10 9 31 31 H 1.08998 * 117.50357 * 145.01760 * 11 10 9 32 32 H 1.09005 * 117.49561 * 214.97633 * 12 10 9 33 33 H 1.09001 * 117.50094 * 0.02562 * 12 10 9 34 34 H 1.08994 * 109.46995 * 300.00321 * 16 13 9 35 35 H 1.09003 * 109.46915 * 60.00074 * 16 13 9 36 36 H 1.09004 * 109.70930 * 300.25056 * 19 17 16 37 37 H 1.09000 * 109.71351 * 60.87378 * 19 17 16 38 38 H 1.08003 * 119.97295 * 359.83924 * 22 21 20 39 39 H 1.07996 * 119.94487 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.94844 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.96545 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 1.4478 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0635 -1.2176 -0.2389 9 7 1.3594 -2.3686 0.3013 10 6 0.5522 -2.4628 1.5203 11 6 0.4267 -1.2058 2.3833 12 6 1.2848 -2.3790 2.8609 13 16 1.4848 -3.6727 -0.7116 14 8 0.2931 -4.4115 -0.4809 15 8 1.7589 -3.1030 -1.9842 16 6 2.9280 -4.5849 -0.0984 17 6 3.1504 -5.8279 -0.9624 18 1 2.2428 -6.4311 -0.9791 19 6 4.3113 -6.6538 -0.3919 20 8 4.5005 -7.7992 -1.2296 21 6 4.5146 -7.5787 -2.5727 22 6 5.0399 -8.5467 -3.4158 23 6 5.0578 -8.3391 -4.7820 24 6 4.5528 -7.1663 -5.3120 25 6 4.0295 -6.1971 -4.4773 26 6 4.0091 -6.3989 -3.1052 27 8 3.4935 -5.4339 -2.2956 28 1 -0.4850 -0.8362 -0.0798 29 1 -0.3143 -3.1212 1.4605 30 1 0.9451 -0.3087 2.0444 31 1 -0.5226 -1.0368 2.8915 32 1 0.8999 -2.9820 3.6833 33 1 2.3673 -2.2534 2.8359 34 1 3.8094 -3.9456 -0.1471 35 1 2.7549 -4.8871 0.9345 36 1 5.2202 -6.0521 -0.3812 37 1 4.0707 -6.9751 0.6215 38 1 5.4350 -9.4638 -3.0044 39 1 5.4668 -9.0943 -5.4368 40 1 4.5677 -7.0070 -6.3801 41 1 3.6354 -5.2820 -4.8940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603277365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:59 Heat of formation + Delta-G solvation = -72.134387 kcal Electronic energy + Delta-G solvation = -28102.487485 eV Core-core repulsion = 24077.076743 eV Total energy + Delta-G solvation = -4025.410742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.37185 -37.91453 -37.51941 -37.36392 -36.01273 -34.79954 -33.06488 -32.92203 -30.78333 -30.75718 -29.22458 -27.00816 -24.55906 -23.84835 -22.79690 -21.45466 -20.93842 -20.62947 -19.02823 -18.72422 -17.71905 -17.25663 -16.98278 -16.76192 -15.79596 -15.38859 -15.15467 -15.02545 -14.60727 -14.55368 -14.17850 -14.01208 -13.90671 -13.88279 -13.74099 -13.09210 -12.67906 -12.46697 -12.14017 -12.06300 -11.97923 -11.33677 -11.23005 -11.18502 -11.05197 -10.93270 -10.83033 -10.79240 -10.41843 -10.28572 -10.16603 -9.89975 -9.86819 -9.32047 -8.75406 -8.55038 -8.17566 -7.83382 -6.59503 -4.18748 1.13330 1.19155 1.20677 2.86567 3.01632 3.28269 3.33993 3.48980 3.61877 3.72076 4.07452 4.29159 4.43379 4.50723 4.57074 4.73786 4.80921 4.85655 4.90831 5.00246 5.09063 5.16202 5.25293 5.30336 5.36867 5.61385 5.72573 5.79218 5.81096 5.93811 5.97964 6.03519 6.10608 6.28626 6.35268 6.41699 6.52204 6.80643 6.84623 7.16652 7.31525 7.42788 7.94618 8.20520 9.03520 9.23015 10.64000 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.003572 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.972666 B = 7837.887549 C = 8510.219405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.014 3.986 3 Si 1.076 2.924 4 H -0.282 1.282 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.360 4.360 8 H 0.076 0.924 9 N -0.827 5.827 10 C 0.085 3.915 11 C -0.150 4.150 12 C -0.217 4.217 13 S 2.549 3.451 14 O -0.999 6.999 15 O -0.942 6.942 16 C -0.634 4.634 17 C 0.064 3.936 18 H 0.095 0.905 19 C 0.036 3.964 20 O -0.308 6.308 21 C 0.045 3.955 22 C -0.116 4.116 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.111 4.111 26 C 0.056 3.944 27 O -0.295 6.295 28 H 0.282 0.718 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.397 -12.126 -0.764 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.198 4.198 3 Si 0.902 3.098 4 H -0.208 1.208 5 H -0.205 1.205 6 H -0.207 1.207 7 C -0.500 4.500 8 H 0.094 0.906 9 N -0.655 5.655 10 C -0.024 4.024 11 C -0.189 4.189 12 C -0.258 4.258 13 S 2.650 3.350 14 O -0.988 6.988 15 O -0.932 6.932 16 C -0.757 4.757 17 C 0.006 3.994 18 H 0.112 0.888 19 C -0.040 4.040 20 O -0.222 6.222 21 C 0.000 4.000 22 C -0.135 4.135 23 C -0.139 4.139 24 C -0.134 4.134 25 C -0.129 4.129 26 C 0.011 3.989 27 O -0.210 6.210 28 H 0.093 0.907 29 H 0.131 0.869 30 H 0.141 0.859 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.100 0.900 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.636 -10.899 -1.448 13.981 hybrid contribution 0.674 -1.754 0.596 1.971 sum 9.309 -12.653 -0.852 15.732 Atomic orbital electron populations 1.70686 1.06804 1.32045 1.38981 1.26572 0.96670 1.02736 0.93870 0.83397 0.74981 0.74194 0.77223 1.20841 1.20508 1.20711 1.19867 0.93819 0.85071 1.51290 0.90606 1.52269 1.60037 1.24055 1.29185 1.21383 0.96108 1.02756 0.82126 1.23312 1.00195 0.94382 1.01019 1.23369 0.99403 1.04673 0.98331 1.08720 0.75165 0.75067 0.76039 1.93411 1.43019 1.75900 1.86496 1.93476 1.85365 1.74699 1.39612 1.30760 1.27150 1.08681 1.09066 1.22675 0.99038 0.95925 0.81719 0.88771 1.23676 0.98423 0.87135 0.94787 1.86284 1.88668 1.33640 1.13632 1.18978 1.01590 0.95728 0.83679 1.20408 1.01421 0.99054 0.92586 1.20902 1.01069 0.97960 0.93944 1.20939 0.99311 0.93383 0.99792 1.20625 1.01663 1.01226 0.89432 1.19039 0.99005 0.89384 0.91484 1.86513 1.78127 1.34021 1.22322 0.90680 0.86886 0.85868 0.90321 0.90289 0.89107 0.84227 0.83782 0.89957 0.85625 0.84909 0.85137 0.84971 0.84180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.08 11.91 55.49 0.66 -22.42 16 2 C 0.01 0.36 3.13 -17.43 -0.05 0.31 16 3 Si 1.08 22.50 29.79 -169.99 -5.06 17.44 16 4 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.36 -9.05 8.16 -15.06 -0.12 -9.17 16 8 H 0.08 1.86 7.87 -52.49 -0.41 1.45 16 9 N -0.83 -19.40 2.65 -53.43 -0.14 -19.54 16 10 C 0.08 1.82 5.17 -67.93 -0.35 1.47 16 11 C -0.15 -3.10 8.23 -26.73 -0.22 -3.32 16 12 C -0.22 -3.89 10.37 -26.73 -0.28 -4.17 16 13 S 2.55 57.41 5.24 -107.50 -0.56 56.84 16 14 O -1.00 -24.16 16.81 -57.54 -0.97 -25.13 16 15 O -0.94 -24.88 16.76 -59.72 -1.00 -25.88 16 16 C -0.63 -10.40 5.90 37.16 0.22 -10.18 16 17 C 0.06 1.03 3.02 -26.49 -0.08 0.95 16 18 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 19 C 0.04 0.46 6.56 37.40 0.25 0.70 16 20 O -0.31 -4.36 10.42 -32.88 -0.34 -4.70 16 21 C 0.05 0.66 6.49 -39.14 -0.25 0.41 16 22 C -0.12 -1.37 9.96 -39.42 -0.39 -1.76 16 23 C -0.12 -1.23 10.04 -39.59 -0.40 -1.63 16 24 C -0.12 -1.29 10.04 -39.59 -0.40 -1.68 16 25 C -0.11 -1.58 9.96 -39.42 -0.39 -1.97 16 26 C 0.06 0.91 6.49 -39.14 -0.25 0.66 16 27 O -0.30 -5.44 9.43 -37.00 -0.35 -5.79 16 28 H 0.28 7.94 7.08 -40.82 -0.29 7.65 16 29 H 0.11 2.41 7.38 -51.93 -0.38 2.02 16 30 H 0.12 2.83 4.96 -51.93 -0.26 2.57 16 31 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.60 8.14 -51.93 -0.42 1.17 16 34 H 0.14 2.17 8.14 -51.93 -0.42 1.75 16 35 H 0.14 1.89 8.14 -51.92 -0.42 1.47 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 39 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 40 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 41 H 0.14 1.96 8.06 -52.49 -0.42 1.54 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -32.90 352.50 -10.40 -43.30 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -5.21 Total: 9.96 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: -2.73 Total: -29.40 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.52 Total: -41.96 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -2.66 Total: -61.50 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.06 Total: 17.44 kcal Atomic # 16 Polarization: 57.41 SS G_CDS: -0.56 Total: 56.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.90 -10.40 -43.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603277365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.837 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds