Wall clock time and date at job start Tue Mar 31 2020 21:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 120.00142 * 2 1 4 4 H 1.48496 * 109.47181 * 90.00192 * 3 2 1 5 5 H 1.48502 * 109.47089 * 329.99883 * 3 2 1 6 6 H 1.48499 * 109.46876 * 210.00119 * 3 2 1 7 7 C 1.38817 * 119.99593 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99933 * 165.23339 * 7 2 1 9 9 N 1.36937 * 120.00082 * 345.22808 * 7 2 1 10 10 C 1.46504 * 120.00053 * 308.81753 * 9 7 2 11 11 C 1.52993 * 117.49951 * 2.58086 * 10 9 7 12 12 C 1.52998 * 117.49644 * 293.95732 * 10 9 7 13 13 S 1.65597 * 119.99783 * 128.81578 * 9 7 2 14 14 O 1.42095 * 104.27928 * 206.07132 * 13 9 7 15 15 O 1.42099 * 104.28046 * 333.93165 * 13 9 7 16 16 C 1.81407 * 104.44818 * 89.99933 * 13 9 7 17 17 C 1.52996 * 109.46981 * 179.97438 * 16 13 9 18 18 H 1.08993 * 109.70928 * 304.42336 * 17 16 13 19 19 C 1.53470 * 109.70843 * 183.79994 * 17 16 13 20 20 O 1.43166 * 108.24043 * 180.57094 * 19 17 16 21 21 C 1.36113 * 116.69051 * 46.25107 * 20 19 17 22 22 C 1.38700 * 119.38468 * 162.81451 * 21 20 19 23 23 C 1.38202 * 120.06526 * 179.81449 * 22 21 20 24 24 C 1.38253 * 120.11001 * 0.02562 * 23 22 21 25 25 C 1.38201 * 120.11428 * 0.05340 * 24 23 22 26 26 C 1.38705 * 120.06433 * 359.97438 * 25 24 23 27 27 O 1.36111 * 119.39389 * 179.84459 * 26 25 24 28 28 H 0.96994 * 120.00162 * 174.55046 * 1 2 3 29 29 H 1.08995 * 115.54495 * 148.28692 * 10 9 7 30 30 H 1.09007 * 117.49888 * 359.97438 * 11 10 9 31 31 H 1.08998 * 117.50357 * 145.01760 * 11 10 9 32 32 H 1.09005 * 117.49561 * 214.97633 * 12 10 9 33 33 H 1.09001 * 117.50094 * 0.02562 * 12 10 9 34 34 H 1.08994 * 109.46995 * 300.00321 * 16 13 9 35 35 H 1.09003 * 109.46915 * 60.00074 * 16 13 9 36 36 H 1.09004 * 109.70930 * 300.25056 * 19 17 16 37 37 H 1.09000 * 109.71351 * 60.87378 * 19 17 16 38 38 H 1.08003 * 119.97295 * 359.83924 * 22 21 20 39 39 H 1.07996 * 119.94487 * 180.02562 * 23 22 21 40 40 H 1.07998 * 119.94844 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.96545 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 1.4000 5 1 1.4478 2.6527 -0.7001 6 1 3.5478 1.4401 -0.7001 7 6 2.0103 -1.2022 -0.0005 8 1 3.0635 -1.2176 -0.2389 9 7 1.3594 -2.3686 0.3013 10 6 0.5522 -2.4628 1.5203 11 6 0.4267 -1.2058 2.3833 12 6 1.2848 -2.3790 2.8609 13 16 1.4848 -3.6727 -0.7116 14 8 0.2931 -4.4115 -0.4809 15 8 1.7589 -3.1030 -1.9842 16 6 2.9280 -4.5849 -0.0984 17 6 3.1504 -5.8279 -0.9624 18 1 2.2428 -6.4311 -0.9791 19 6 4.3113 -6.6538 -0.3919 20 8 4.5005 -7.7992 -1.2296 21 6 4.5146 -7.5787 -2.5727 22 6 5.0399 -8.5467 -3.4158 23 6 5.0578 -8.3391 -4.7820 24 6 4.5528 -7.1663 -5.3120 25 6 4.0295 -6.1971 -4.4773 26 6 4.0091 -6.3989 -3.1052 27 8 3.4935 -5.4339 -2.2956 28 1 -0.4850 -0.8362 -0.0798 29 1 -0.3143 -3.1212 1.4605 30 1 0.9451 -0.3087 2.0444 31 1 -0.5226 -1.0368 2.8915 32 1 0.8999 -2.9820 3.6833 33 1 2.3673 -2.2534 2.8359 34 1 3.8094 -3.9456 -0.1471 35 1 2.7549 -4.8871 0.9345 36 1 5.2202 -6.0521 -0.3812 37 1 4.0707 -6.9751 0.6215 38 1 5.4350 -9.4638 -3.0044 39 1 5.4668 -9.0943 -5.4368 40 1 4.5677 -7.0070 -6.3801 41 1 3.6354 -5.2820 -4.8940 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603277365.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:54:57 Heat of formation + Delta-G solvation = -94.648487 kcal Electronic energy + Delta-G solvation = -28103.463769 eV Core-core repulsion = 24077.076743 eV Total energy + Delta-G solvation = -4026.387027 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.43854 -39.21035 -38.91123 -38.45136 -37.92631 -36.72426 -34.70081 -34.25920 -32.61688 -31.72238 -30.27869 -28.13669 -26.44622 -24.98698 -23.79167 -22.96457 -22.51000 -21.83935 -20.61838 -20.09815 -19.10027 -18.77852 -18.42358 -18.13023 -17.25432 -16.87931 -16.44413 -16.16528 -16.00174 -15.71820 -15.62990 -15.60610 -15.44688 -14.99829 -14.90764 -14.51750 -14.24337 -13.87439 -13.70463 -13.05014 -12.99482 -12.90228 -12.86698 -12.81037 -12.67198 -12.38137 -12.28172 -12.03852 -11.97399 -11.90912 -11.81214 -11.67320 -11.31681 -10.96450 -10.38323 -9.73775 -9.63229 -9.20312 -8.53433 -6.16206 -0.59159 0.21986 0.23187 1.58927 1.66809 1.76549 1.83367 1.94433 2.09617 2.58248 2.66304 2.88221 3.00392 3.08436 3.20015 3.34146 3.36737 3.48575 3.51781 4.02340 4.03244 4.09108 4.22063 4.24514 4.29289 4.32790 4.36793 4.41917 4.45386 4.52778 4.69222 4.80279 4.94196 5.11152 5.15354 5.27931 5.44354 5.55726 5.64822 5.67883 5.76637 6.06658 6.19496 6.25930 7.15621 7.31425 8.64761 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.018915 B = 0.003572 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.972666 B = 7837.887549 C = 8510.219405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C -0.024 4.024 3 Si 1.115 2.885 4 H -0.258 1.258 5 H -0.290 1.290 6 H -0.270 1.270 7 C -0.378 4.378 8 H 0.076 0.924 9 N -0.838 5.838 10 C 0.054 3.946 11 C -0.163 4.163 12 C -0.173 4.173 13 S 2.548 3.452 14 O -1.025 7.025 15 O -0.996 6.996 16 C -0.598 4.598 17 C 0.051 3.949 18 H 0.088 0.912 19 C 0.041 3.959 20 O -0.311 6.311 21 C 0.028 3.972 22 C -0.116 4.116 23 C -0.106 4.106 24 C -0.109 4.109 25 C -0.137 4.137 26 C 0.017 3.983 27 O -0.331 6.331 28 H 0.261 0.739 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.154 0.846 35 H 0.188 0.812 36 H 0.092 0.908 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.173 0.827 40 H 0.163 0.837 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.205 -14.618 0.324 19.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.230 4.230 3 Si 0.936 3.064 4 H -0.183 1.183 5 H -0.216 1.216 6 H -0.194 1.194 7 C -0.515 4.515 8 H 0.094 0.906 9 N -0.667 5.667 10 C -0.054 4.054 11 C -0.202 4.202 12 C -0.213 4.213 13 S 2.655 3.345 14 O -1.015 7.015 15 O -0.986 6.986 16 C -0.727 4.727 17 C -0.007 4.007 18 H 0.106 0.894 19 C -0.035 4.035 20 O -0.226 6.226 21 C -0.017 4.017 22 C -0.134 4.134 23 C -0.124 4.124 24 C -0.127 4.127 25 C -0.155 4.155 26 C -0.027 4.027 27 O -0.247 6.247 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.118 0.882 34 H 0.172 0.828 35 H 0.205 0.795 36 H 0.110 0.890 37 H 0.182 0.818 38 H 0.176 0.824 39 H 0.191 0.809 40 H 0.181 0.819 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 11.397 -13.328 -0.355 17.540 hybrid contribution -0.131 -1.223 0.166 1.241 sum 11.266 -14.551 -0.188 18.404 Atomic orbital electron populations 1.70820 1.07751 1.30558 1.42600 1.27786 0.96604 1.05775 0.92871 0.82930 0.74213 0.70795 0.78479 1.18312 1.21554 1.19447 1.20005 0.93999 0.85904 1.51611 0.90606 1.52270 1.60328 1.23895 1.30199 1.21494 0.97128 1.03733 0.83053 1.23219 1.01293 0.93952 1.01730 1.23442 0.99461 1.01961 0.96413 1.07745 0.76482 0.75155 0.75128 1.93378 1.45624 1.75925 1.86591 1.93421 1.86558 1.76194 1.42396 1.30365 1.22884 1.08365 1.11125 1.22868 1.00667 0.95675 0.81461 0.89398 1.23845 0.97097 0.86678 0.95848 1.86268 1.88694 1.34045 1.13579 1.19278 1.02351 0.95822 0.84251 1.20865 1.00377 0.99136 0.93070 1.21419 0.99036 0.98033 0.93900 1.21338 0.97705 0.92726 1.00945 1.20837 1.03113 1.02016 0.89579 1.19416 1.01056 0.90253 0.91992 1.86454 1.78981 1.35725 1.23520 0.92906 0.87712 0.88207 0.89533 0.86586 0.88244 0.82784 0.79463 0.89010 0.81843 0.82374 0.80945 0.81932 0.85613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.06 11.91 21.65 0.26 -49.81 16 2 C -0.02 -1.25 3.13 84.86 0.27 -0.99 16 3 Si 1.12 46.03 29.79 68.60 2.04 48.07 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 5 H -0.29 -12.30 7.11 99.48 0.71 -11.60 16 6 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 7 C -0.38 -19.41 8.16 84.03 0.69 -18.72 16 8 H 0.08 3.79 7.87 -2.91 -0.02 3.77 16 9 N -0.84 -40.07 2.65 -322.95 -0.85 -40.92 16 10 C 0.05 2.31 5.17 44.99 0.23 2.54 16 11 C -0.16 -6.71 8.23 30.59 0.25 -6.46 16 12 C -0.17 -5.76 10.37 30.59 0.32 -5.44 16 13 S 2.55 117.83 5.24 -56.49 -0.30 117.53 16 14 O -1.03 -51.27 16.81 -127.65 -2.15 -53.41 16 15 O -1.00 -55.49 16.76 -125.56 -2.10 -57.59 16 16 C -0.60 -18.64 5.90 71.98 0.42 -18.22 16 17 C 0.05 1.59 3.02 30.75 0.09 1.69 16 18 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 19 C 0.04 0.94 6.56 72.14 0.47 1.41 16 20 O -0.31 -8.11 10.42 -82.62 -0.86 -8.97 16 21 C 0.03 0.77 6.49 22.55 0.15 0.92 16 22 C -0.12 -2.39 9.96 22.37 0.22 -2.17 16 23 C -0.11 -1.78 10.04 22.26 0.22 -1.56 16 24 C -0.11 -2.20 10.04 22.26 0.22 -1.97 16 25 C -0.14 -3.97 9.96 22.37 0.22 -3.75 16 26 C 0.02 0.56 6.49 22.56 0.15 0.71 16 27 O -0.33 -12.52 9.43 -78.65 -0.74 -13.26 16 28 H 0.26 15.61 7.08 -92.71 -0.66 14.95 16 29 H 0.11 4.58 7.38 -2.39 -0.02 4.56 16 30 H 0.10 4.65 4.96 -2.38 -0.01 4.63 16 31 H 0.09 3.32 8.14 -2.39 -0.02 3.31 16 32 H 0.12 3.03 8.14 -2.38 -0.02 3.01 16 33 H 0.10 3.17 8.14 -2.39 -0.02 3.15 16 34 H 0.15 4.49 8.14 -2.39 -0.02 4.47 16 35 H 0.19 4.18 8.14 -2.39 -0.02 4.17 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 40 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 41 H 0.13 3.83 8.06 -2.91 -0.02 3.80 16 Total: -1.00 -78.17 352.50 0.39 -77.78 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: 1.16 Total: 32.58 kcal Atomic # 6 Polarization: -55.94 SS G_CDS: 3.93 Total: -52.01 kcal Atomic # 7 Polarization: -90.13 SS G_CDS: -0.60 Total: -90.73 kcal Atomic # 8 Polarization: -127.38 SS G_CDS: -5.85 Total: -133.23 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.04 Total: 48.07 kcal Atomic # 16 Polarization: 117.83 SS G_CDS: -0.30 Total: 117.53 kcal Total: -78.17 0.39 -77.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603277365.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.864 kcal (2) G-P(sol) polarization free energy of solvation -78.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds