Wall clock time and date at job start Tue Mar 31 2020 22:29:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34712 * 116.99772 * 2 1 4 4 O 1.21467 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.47728 * 119.99887 * 180.02562 * 3 2 1 6 6 C 1.39647 * 120.14951 * 90.29096 * 5 3 2 7 7 C 1.50697 * 120.07866 * 359.97438 * 6 5 3 8 8 C 1.37925 * 119.84266 * 180.25403 * 6 5 3 9 9 C 1.38384 * 120.15254 * 359.44829 * 8 6 5 10 10 C 1.38342 * 120.30324 * 0.27741 * 9 8 6 11 11 C 1.37964 * 120.14910 * 359.97438 * 10 9 8 12 12 S 1.76202 * 120.07819 * 180.02562 * 11 10 9 13 13 O 1.42097 * 106.40685 * 228.54448 * 12 11 10 14 14 O 1.42103 * 106.40108 * 1.46492 * 12 11 10 15 15 N 1.65597 * 107.21810 * 115.00231 * 12 11 10 16 16 C 1.36933 * 119.99998 * 101.75960 * 15 12 11 17 17 H 1.08003 * 120.00159 * 230.87820 * 16 15 12 18 18 C 1.38820 * 120.00055 * 50.88262 * 16 15 12 19 19 N 1.31613 * 119.99947 * 197.39938 * 18 16 15 20 20 Si 1.86798 * 119.99777 * 17.40167 * 18 16 15 21 21 H 1.48495 * 109.47146 * 89.35443 * 20 18 16 22 22 H 1.48504 * 109.47089 * 209.35713 * 20 18 16 23 23 H 1.48506 * 109.47085 * 329.35536 * 20 18 16 24 24 C 1.46502 * 120.00130 * 281.76182 * 15 12 11 25 25 C 1.53006 * 117.49959 * 193.48966 * 24 15 12 26 26 C 1.52996 * 117.50030 * 124.86342 * 24 15 12 27 27 H 1.09003 * 109.47730 * 300.00527 * 1 2 3 28 28 H 1.08993 * 109.47123 * 60.00621 * 1 2 3 29 29 H 1.09009 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47763 * 270.27283 * 7 6 5 31 31 H 1.09003 * 109.47193 * 30.27308 * 7 6 5 32 32 H 1.08999 * 109.47378 * 150.27057 * 7 6 5 33 33 H 1.08001 * 119.92199 * 179.72682 * 8 6 5 34 34 H 1.08000 * 119.84684 * 180.30171 * 9 8 6 35 35 H 1.08000 * 119.92944 * 179.97438 * 10 9 8 36 36 H 0.97004 * 119.99992 * 179.97438 * 19 18 16 37 37 H 1.09005 * 115.54899 * 339.19563 * 24 15 12 38 38 H 1.09001 * 117.49569 * 359.97438 * 25 24 15 39 39 H 1.08993 * 117.49581 * 145.02171 * 25 24 15 40 40 H 1.09005 * 117.50313 * 214.97803 * 26 24 15 41 41 H 1.08999 * 117.49713 * 0.02562 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2777 -0.0006 6 6 4.2384 1.3208 -1.2084 7 6 3.4904 1.2879 -2.5161 8 6 5.6161 1.3876 -1.2016 9 6 6.3043 1.4236 -0.0016 10 6 5.6172 1.3869 1.1986 11 6 4.2395 1.3148 1.2064 12 16 3.3661 1.2690 2.7361 13 8 2.4383 0.1974 2.6365 14 8 4.3469 1.3551 3.7607 15 7 2.4687 2.6575 2.8299 16 6 1.1262 2.6244 2.5619 17 1 0.6978 3.3264 1.8618 18 6 0.3158 1.6886 3.1901 19 7 -0.8768 1.4185 2.7033 20 14 0.9180 0.8129 4.7263 21 1 0.5379 1.6008 5.9263 22 1 0.2991 -0.5348 4.8025 23 1 2.3958 0.6767 4.6713 24 6 3.1109 3.9212 3.1997 25 6 2.2011 5.0920 3.5773 26 6 2.9480 5.1032 2.2420 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.3599 0.2536 -2.8343 31 1 2.5136 1.7545 -2.3878 32 1 4.0563 1.8320 -3.2723 33 1 6.1586 1.4166 -2.1349 34 1 7.3828 1.4808 -0.0020 35 1 6.1604 1.4149 2.1316 36 1 -1.4429 0.7643 3.1421 37 1 4.0594 3.8294 3.7289 38 1 1.1248 4.9221 3.5502 39 1 2.5510 5.7706 4.3552 40 1 3.7891 5.7892 2.1414 41 1 2.3626 4.9406 1.3370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611016555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:05 Heat of formation + Delta-G solvation = -70.897333 kcal Electronic energy + Delta-G solvation = -30291.763234 eV Core-core repulsion = 26266.406135 eV Total energy + Delta-G solvation = -4025.357099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.95152 -38.37404 -37.35692 -35.98882 -35.39857 -34.67396 -33.41855 -32.75213 -31.39038 -31.16210 -27.32966 -26.50993 -24.91867 -23.66148 -22.08097 -21.61149 -20.56557 -20.12538 -19.23754 -17.78615 -17.21778 -16.42310 -16.30513 -16.13544 -15.70235 -15.31790 -14.76462 -14.54493 -14.16919 -14.02417 -13.60741 -13.58538 -13.44642 -13.05635 -12.79829 -12.38500 -12.15044 -12.09712 -11.97966 -11.75843 -11.52721 -11.41208 -11.30425 -11.02804 -10.89706 -10.74563 -10.70772 -10.45106 -10.40915 -10.00348 -9.81842 -9.69564 -9.57276 -9.17582 -8.94039 -8.77193 -8.56951 -7.75195 -6.67773 -4.28747 1.05626 1.36083 1.54142 2.92882 3.20155 3.35825 3.39331 3.43682 3.69848 4.01761 4.26536 4.57602 4.76229 4.83326 4.91822 4.96292 5.19904 5.33680 5.48859 5.51593 5.60447 5.65408 5.66701 5.74299 5.78715 5.87693 5.98795 6.00174 6.13639 6.17151 6.21577 6.29388 6.41032 6.44774 6.51070 6.67191 6.91696 6.96854 7.00848 7.12107 7.29657 7.61177 8.18549 8.55410 8.80057 8.98240 10.30248 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012104 B = 0.007897 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.771632 B = 3544.917980 C = 4233.512812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.339 6.339 3 C 0.488 3.512 4 O -0.449 6.449 5 C -0.002 4.002 6 C -0.077 4.077 7 C -0.119 4.119 8 C -0.091 4.091 9 C -0.126 4.126 10 C -0.047 4.047 11 C -0.618 4.618 12 S 2.514 3.486 13 O -0.956 6.956 14 O -0.997 6.997 15 N -0.804 5.804 16 C -0.226 4.226 17 H 0.109 0.891 18 C 0.082 3.918 19 N -0.806 5.806 20 Si 0.936 3.064 21 H -0.292 1.292 22 H -0.276 1.276 23 H -0.292 1.292 24 C 0.088 3.912 25 C -0.164 4.164 26 C -0.201 4.201 27 H 0.123 0.877 28 H 0.044 0.956 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.284 0.716 37 H 0.121 0.879 38 H 0.112 0.888 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.734 1.901 -6.757 9.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.255 6.255 3 C 0.328 3.672 4 O -0.334 6.334 5 C -0.004 4.004 6 C -0.077 4.077 7 C -0.176 4.176 8 C -0.109 4.109 9 C -0.145 4.145 10 C -0.066 4.066 11 C -0.696 4.696 12 S 2.619 3.381 13 O -0.945 6.945 14 O -0.987 6.987 15 N -0.624 5.624 16 C -0.376 4.376 17 H 0.127 0.873 18 C -0.134 4.134 19 N -0.444 5.444 20 Si 0.767 3.233 21 H -0.221 1.221 22 H -0.201 1.201 23 H -0.220 1.220 24 C -0.020 4.020 25 C -0.203 4.203 26 C -0.241 4.241 27 H 0.140 0.860 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.130 0.870 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.703 1.263 -6.227 9.236 hybrid contribution 0.553 -0.497 -0.158 0.760 sum 7.256 0.766 -6.385 9.696 Atomic orbital electron populations 1.23750 0.75817 1.02749 1.05462 1.86508 1.23863 1.31588 1.83511 1.20806 0.88137 0.82979 0.75306 1.90905 1.65410 1.35575 1.41468 1.18623 0.90186 0.98591 0.93046 1.19930 0.94043 0.99751 0.94016 1.20869 1.00381 1.02815 0.93538 1.21031 0.92990 0.98601 0.98303 1.21352 0.99978 1.00615 0.92538 1.20901 0.92270 0.94450 0.99007 1.32460 1.06101 1.08991 1.22011 1.12146 0.73032 0.78162 0.74740 1.93264 1.60648 1.53652 1.86953 1.93335 1.62234 1.87503 1.55586 1.52824 1.14497 1.20793 1.74331 1.19136 0.78665 1.18122 1.21725 0.87331 1.25941 0.94458 0.95237 0.97763 1.69594 1.09206 1.28753 1.36836 0.85920 0.78184 0.78652 0.80563 1.22070 1.20103 1.22028 1.21399 0.97707 0.80999 1.01916 1.23171 1.00364 0.99368 0.97391 1.23311 1.03107 1.02175 0.95501 0.85961 0.93740 0.90070 0.90572 0.91177 0.90929 0.85306 0.85386 0.84285 0.90526 0.86122 0.86950 0.89492 0.89732 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.56 101.05 1.07 1.39 16 2 O -0.34 -7.73 9.90 -44.79 -0.44 -8.18 16 3 C 0.49 11.12 3.34 34.61 0.12 11.24 16 4 O -0.45 -10.79 13.64 -19.24 -0.26 -11.05 16 5 C 0.00 -0.05 5.75 -104.98 -0.60 -0.65 16 6 C -0.08 -1.30 5.91 -104.21 -0.62 -1.92 16 7 C -0.12 -1.65 9.62 36.00 0.35 -1.31 16 8 C -0.09 -1.30 9.69 -39.64 -0.38 -1.68 16 9 C -0.13 -1.85 10.04 -39.49 -0.40 -2.25 16 10 C -0.05 -0.87 9.54 -39.64 -0.38 -1.25 16 11 C -0.62 -13.44 5.94 -39.17 -0.23 -13.68 16 12 S 2.51 62.73 3.03 -107.50 -0.33 62.40 16 13 O -0.96 -25.94 10.79 -62.53 -0.67 -26.62 16 14 O -1.00 -25.73 15.25 -57.17 -0.87 -26.60 16 15 N -0.80 -19.00 2.50 -53.42 -0.13 -19.14 16 16 C -0.23 -5.63 5.00 -15.06 -0.08 -5.71 16 17 H 0.11 2.86 7.07 -52.48 -0.37 2.49 16 18 C 0.08 2.10 4.51 -17.43 -0.08 2.03 16 19 N -0.81 -20.35 11.41 55.49 0.63 -19.71 16 20 Si 0.94 23.72 25.35 -169.99 -4.31 19.41 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.86 4.08 68.17 0.28 -7.58 16 24 C 0.09 1.77 6.45 -67.93 -0.44 1.33 16 25 C -0.16 -2.85 9.86 -26.72 -0.26 -3.12 16 26 C -0.20 -3.50 10.18 -26.73 -0.27 -3.77 16 27 H 0.12 2.88 5.09 -51.93 -0.26 2.61 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.07 7.09 -51.93 -0.37 0.70 16 32 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 35 H 0.14 2.41 7.33 -52.49 -0.38 2.03 16 36 H 0.28 6.72 8.31 -40.82 -0.34 6.38 16 37 H 0.12 2.28 7.54 -51.93 -0.39 1.89 16 38 H 0.11 2.13 7.16 -51.93 -0.37 1.76 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.10 1.93 8.06 -51.93 -0.42 1.51 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -30.57 339.11 -8.70 -39.27 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.21 Total: 4.45 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -2.21 Total: -19.34 kcal Atomic # 7 Polarization: -39.35 SS G_CDS: 0.50 Total: -38.85 kcal Atomic # 8 Polarization: -70.20 SS G_CDS: -2.25 Total: -72.45 kcal Atomic # 14 Polarization: 23.72 SS G_CDS: -4.31 Total: 19.41 kcal Atomic # 16 Polarization: 62.73 SS G_CDS: -0.33 Total: 62.40 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -30.57 -8.70 -39.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611016555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.632 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds