Wall clock time and date at job start Tue Mar 31 2020 22:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34712 * 116.99772 * 2 1 4 4 O 1.21467 * 120.00079 * 359.97438 * 3 2 1 5 5 C 1.47728 * 119.99887 * 180.02562 * 3 2 1 6 6 C 1.39647 * 120.14951 * 90.29096 * 5 3 2 7 7 C 1.50697 * 120.07866 * 359.97438 * 6 5 3 8 8 C 1.37925 * 119.84266 * 180.25403 * 6 5 3 9 9 C 1.38384 * 120.15254 * 359.44829 * 8 6 5 10 10 C 1.38342 * 120.30324 * 0.27741 * 9 8 6 11 11 C 1.37964 * 120.14910 * 359.97438 * 10 9 8 12 12 S 1.76202 * 120.07819 * 180.02562 * 11 10 9 13 13 O 1.42097 * 106.40685 * 228.54448 * 12 11 10 14 14 O 1.42103 * 106.40108 * 1.46492 * 12 11 10 15 15 N 1.65597 * 107.21810 * 115.00231 * 12 11 10 16 16 C 1.36933 * 119.99998 * 101.75960 * 15 12 11 17 17 H 1.08003 * 120.00159 * 230.87820 * 16 15 12 18 18 C 1.38820 * 120.00055 * 50.88262 * 16 15 12 19 19 N 1.31613 * 119.99947 * 197.39938 * 18 16 15 20 20 Si 1.86798 * 119.99777 * 17.40167 * 18 16 15 21 21 H 1.48495 * 109.47146 * 89.35443 * 20 18 16 22 22 H 1.48504 * 109.47089 * 209.35713 * 20 18 16 23 23 H 1.48506 * 109.47085 * 329.35536 * 20 18 16 24 24 C 1.46502 * 120.00130 * 281.76182 * 15 12 11 25 25 C 1.53006 * 117.49959 * 193.48966 * 24 15 12 26 26 C 1.52996 * 117.50030 * 124.86342 * 24 15 12 27 27 H 1.09003 * 109.47730 * 300.00527 * 1 2 3 28 28 H 1.08993 * 109.47123 * 60.00621 * 1 2 3 29 29 H 1.09009 * 109.47098 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47763 * 270.27283 * 7 6 5 31 31 H 1.09003 * 109.47193 * 30.27308 * 7 6 5 32 32 H 1.08999 * 109.47378 * 150.27057 * 7 6 5 33 33 H 1.08001 * 119.92199 * 179.72682 * 8 6 5 34 34 H 1.08000 * 119.84684 * 180.30171 * 9 8 6 35 35 H 1.08000 * 119.92944 * 179.97438 * 10 9 8 36 36 H 0.97004 * 119.99992 * 179.97438 * 19 18 16 37 37 H 1.09005 * 115.54899 * 339.19563 * 24 15 12 38 38 H 1.09001 * 117.49569 * 359.97438 * 25 24 15 39 39 H 1.08993 * 117.49581 * 145.02171 * 25 24 15 40 40 H 1.09005 * 117.50313 * 214.97803 * 26 24 15 41 41 H 1.08999 * 117.49713 * 0.02562 * 26 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2003 0.0000 4 8 1.4020 2.2190 -0.0005 5 6 3.5388 1.2777 -0.0006 6 6 4.2384 1.3208 -1.2084 7 6 3.4904 1.2879 -2.5161 8 6 5.6161 1.3876 -1.2016 9 6 6.3043 1.4236 -0.0016 10 6 5.6172 1.3869 1.1986 11 6 4.2395 1.3148 1.2064 12 16 3.3661 1.2690 2.7361 13 8 2.4383 0.1974 2.6365 14 8 4.3469 1.3551 3.7607 15 7 2.4687 2.6575 2.8299 16 6 1.1262 2.6244 2.5619 17 1 0.6978 3.3264 1.8618 18 6 0.3158 1.6886 3.1901 19 7 -0.8768 1.4185 2.7033 20 14 0.9180 0.8129 4.7263 21 1 0.5379 1.6008 5.9263 22 1 0.2991 -0.5348 4.8025 23 1 2.3958 0.6767 4.6713 24 6 3.1109 3.9212 3.1997 25 6 2.2011 5.0920 3.5773 26 6 2.9480 5.1032 2.2420 27 1 -0.3635 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.3599 0.2536 -2.8343 31 1 2.5136 1.7545 -2.3878 32 1 4.0563 1.8320 -3.2723 33 1 6.1586 1.4166 -2.1349 34 1 7.3828 1.4808 -0.0020 35 1 6.1604 1.4149 2.1316 36 1 -1.4429 0.7643 3.1421 37 1 4.0594 3.8294 3.7289 38 1 1.1248 4.9221 3.5502 39 1 2.5510 5.7706 4.3552 40 1 3.7891 5.7892 2.1414 41 1 2.3626 4.9406 1.3370 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611016555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:03 Heat of formation + Delta-G solvation = -90.586139 kcal Electronic energy + Delta-G solvation = -30292.617005 eV Core-core repulsion = 26266.406135 eV Total energy + Delta-G solvation = -4026.210870 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.53540 -39.84096 -38.95795 -37.98656 -37.14565 -36.68511 -35.21659 -34.02830 -33.13526 -32.61060 -28.76125 -27.92193 -26.76468 -25.12917 -23.52019 -23.01861 -22.20977 -21.65296 -21.12623 -19.49182 -18.88155 -18.21946 -18.00846 -17.81393 -17.31456 -17.12065 -16.40901 -16.02748 -15.81831 -15.58482 -15.25177 -15.03727 -14.92959 -14.81049 -14.30366 -13.86891 -13.84278 -13.55086 -13.35463 -13.28423 -13.23665 -13.04343 -12.89226 -12.81752 -12.70403 -12.51276 -12.36903 -12.17132 -12.12870 -11.73260 -11.58877 -11.39765 -11.19916 -10.97996 -10.64724 -10.31250 -9.89887 -9.48408 -8.60807 -6.21252 -0.45867 -0.21126 0.04583 1.14362 1.21892 1.29887 1.36069 1.90871 2.06075 2.27052 2.50867 2.80036 3.01488 3.21344 3.47719 3.77971 3.81928 3.88737 4.11774 4.14690 4.22861 4.25241 4.31610 4.39275 4.42639 4.54943 4.61870 4.64351 4.65317 4.73888 4.94412 5.02681 5.07379 5.15375 5.18172 5.24061 5.26627 5.43602 5.55800 5.60420 5.78302 5.86340 6.20425 6.84214 6.89239 7.11734 8.41981 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012104 B = 0.007897 C = 0.006612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.771632 B = 3544.917980 C = 4233.512812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.352 6.352 3 C 0.488 3.512 4 O -0.474 6.474 5 C -0.037 4.037 6 C -0.080 4.080 7 C -0.119 4.119 8 C -0.069 4.069 9 C -0.107 4.107 10 C -0.061 4.061 11 C -0.647 4.647 12 S 2.531 3.469 13 O -0.988 6.988 14 O -1.015 7.015 15 N -0.815 5.815 16 C -0.223 4.223 17 H 0.087 0.913 18 C 0.063 3.937 19 N -0.828 5.828 20 Si 0.943 3.057 21 H -0.277 1.277 22 H -0.280 1.280 23 H -0.313 1.313 24 C 0.051 3.949 25 C -0.152 4.152 26 C -0.180 4.180 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.112 0.888 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.142 0.858 36 H 0.286 0.714 37 H 0.130 0.870 38 H 0.090 0.910 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.284 2.714 -9.055 13.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.269 6.269 3 C 0.329 3.671 4 O -0.360 6.360 5 C -0.040 4.040 6 C -0.081 4.081 7 C -0.175 4.175 8 C -0.087 4.087 9 C -0.126 4.126 10 C -0.080 4.080 11 C -0.731 4.731 12 S 2.639 3.361 13 O -0.977 6.977 14 O -1.005 7.005 15 N -0.637 5.637 16 C -0.371 4.371 17 H 0.104 0.896 18 C -0.150 4.150 19 N -0.467 5.467 20 Si 0.775 3.225 21 H -0.205 1.205 22 H -0.205 1.205 23 H -0.243 1.243 24 C -0.056 4.056 25 C -0.191 4.191 26 C -0.219 4.219 27 H 0.114 0.886 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.203 0.797 34 H 0.197 0.803 35 H 0.160 0.840 36 H 0.097 0.903 37 H 0.148 0.852 38 H 0.109 0.891 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.158 2.106 -8.462 13.387 hybrid contribution -0.254 -0.782 0.377 0.904 sum 9.904 1.324 -8.084 12.853 Atomic orbital electron populations 1.23848 0.75197 1.04406 1.04917 1.86497 1.24737 1.32144 1.83480 1.21275 0.89181 0.82457 0.74230 1.90875 1.66315 1.36157 1.42691 1.18767 0.89082 1.01456 0.94660 1.20428 0.95654 0.98488 0.93527 1.20968 0.99492 1.04084 0.93000 1.21706 0.91702 0.94764 1.00493 1.21911 1.02389 0.97352 0.90902 1.21151 0.90883 0.94773 1.01203 1.31729 1.07680 1.13546 1.20160 1.10318 0.72922 0.77579 0.75289 1.93224 1.61816 1.54938 1.87713 1.93307 1.62499 1.87723 1.56939 1.52680 1.14071 1.21464 1.75501 1.18655 0.79281 1.17924 1.21235 0.89590 1.26085 0.94867 0.95823 0.98236 1.69615 1.09571 1.30014 1.37460 0.85857 0.76562 0.78697 0.81396 1.20512 1.20513 1.24257 1.21771 0.98817 0.80528 1.04504 1.23227 0.98965 0.98289 0.98616 1.23275 1.03599 1.00822 0.94233 0.88581 0.92254 0.87370 0.89222 0.93571 0.86909 0.79708 0.80288 0.83998 0.90302 0.85206 0.89103 0.85798 0.86038 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.40 10.56 113.37 1.20 1.60 16 2 O -0.35 -16.56 9.90 -52.14 -0.52 -17.08 16 3 C 0.49 22.75 3.34 70.33 0.23 22.98 16 4 O -0.47 -23.80 13.64 19.94 0.27 -23.53 16 5 C -0.04 -1.55 5.75 -20.10 -0.12 -1.67 16 6 C -0.08 -2.45 5.91 -19.60 -0.12 -2.57 16 7 C -0.12 -2.89 9.62 71.24 0.68 -2.21 16 8 C -0.07 -1.54 9.69 22.23 0.22 -1.33 16 9 C -0.11 -2.55 10.04 22.33 0.22 -2.33 16 10 C -0.06 -2.09 9.54 22.23 0.21 -1.87 16 11 C -0.65 -27.86 5.94 22.53 0.13 -27.73 16 12 S 2.53 129.40 3.03 -56.49 -0.17 129.23 16 13 O -0.99 -55.78 10.79 -122.88 -1.33 -57.11 16 14 O -1.01 -53.32 15.25 -128.00 -1.95 -55.27 16 15 N -0.81 -39.72 2.50 -322.92 -0.81 -40.53 16 16 C -0.22 -11.69 5.00 84.04 0.42 -11.27 16 17 H 0.09 4.86 7.07 -2.91 -0.02 4.84 16 18 C 0.06 3.40 4.51 84.86 0.38 3.78 16 19 N -0.83 -44.09 11.41 21.65 0.25 -43.84 16 20 Si 0.94 49.58 25.35 68.60 1.74 51.32 16 21 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.28 -14.60 7.11 99.48 0.71 -13.89 16 23 H -0.31 -17.54 4.08 92.07 0.38 -17.17 16 24 C 0.05 2.05 6.45 44.99 0.29 2.34 16 25 C -0.15 -5.21 9.86 30.60 0.30 -4.91 16 26 C -0.18 -6.09 10.18 30.60 0.31 -5.78 16 27 H 0.10 4.75 5.09 -2.39 -0.01 4.73 16 28 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.11 3.87 8.14 -2.38 -0.02 3.85 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.35 7.09 -2.39 -0.02 1.33 16 32 H 0.11 1.81 8.09 -2.39 -0.02 1.79 16 33 H 0.19 2.16 8.06 -2.91 -0.02 2.14 16 34 H 0.18 2.49 8.06 -2.91 -0.02 2.46 16 35 H 0.14 4.66 7.33 -2.91 -0.02 4.64 16 36 H 0.29 14.32 8.31 -92.70 -0.77 13.55 16 37 H 0.13 4.86 7.54 -2.38 -0.02 4.85 16 38 H 0.09 3.55 7.16 -2.39 -0.02 3.53 16 39 H 0.12 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.12 3.18 8.14 -2.38 -0.02 3.16 16 41 H 0.08 2.99 8.06 -2.39 -0.02 2.97 16 Total: -1.00 -73.01 339.11 2.59 -70.41 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: 0.73 Total: 17.35 kcal Atomic # 6 Polarization: -35.33 SS G_CDS: 4.38 Total: -30.95 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -0.56 Total: -84.38 kcal Atomic # 8 Polarization: -149.46 SS G_CDS: -3.52 Total: -152.98 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 1.74 Total: 51.32 kcal Atomic # 16 Polarization: 129.40 SS G_CDS: -0.17 Total: 129.23 kcal Total: -73.01 2.59 -70.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611016555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.173 kcal (2) G-P(sol) polarization free energy of solvation -73.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds