Wall clock time and date at job start Tue Mar 31 2020 22:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99837 * 2 1 4 4 H 1.48500 * 109.47493 * 275.41457 * 3 2 1 5 5 H 1.48506 * 109.47229 * 35.41362 * 3 2 1 6 6 H 1.48497 * 109.47227 * 155.41020 * 3 2 1 7 7 C 1.39939 * 120.00431 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99553 * 341.72861 * 7 2 1 9 9 C 1.41396 * 120.00207 * 161.72589 * 7 2 1 10 10 C 1.40729 * 120.24645 * 330.21926 * 9 7 2 11 11 C 1.37597 * 119.74724 * 180.02562 * 10 9 7 12 12 C 1.38663 * 120.24599 * 359.72808 * 11 10 9 13 13 C 1.38611 * 120.50065 * 0.55210 * 12 11 10 14 14 S 1.76194 * 119.87721 * 179.71926 * 13 12 11 15 15 O 1.42099 * 106.40502 * 156.18769 * 14 13 12 16 16 O 1.42103 * 106.40090 * 23.27028 * 14 13 12 17 17 N 1.65598 * 107.22374 * 269.72946 * 14 13 12 18 18 C 1.46499 * 120.00047 * 64.99364 * 17 14 13 19 19 H 1.09001 * 109.46971 * 25.00253 * 18 17 14 20 20 C 1.50708 * 109.47367 * 265.00533 * 18 17 14 21 21 O 1.20825 * 119.99848 * 0.02562 * 20 18 17 22 22 O 1.34225 * 120.00039 * 179.97438 * 20 18 17 23 23 C 1.52999 * 109.47375 * 145.00451 * 18 17 14 24 24 C 1.53777 * 113.61594 * 184.99946 * 23 18 17 25 25 C 1.53781 * 87.08380 * 220.01844 * 24 23 18 26 26 C 1.53789 * 87.17135 * 25.39421 * 25 24 23 27 27 C 1.37644 * 120.24983 * 359.44624 * 13 12 11 28 28 H 0.96999 * 119.99784 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.12788 * 0.02562 * 10 9 7 30 30 H 1.07999 * 119.87820 * 180.02562 * 11 10 9 31 31 H 1.07995 * 119.74720 * 180.29281 * 12 11 10 32 32 H 0.96998 * 120.00393 * 245.00421 * 17 14 13 33 33 H 0.96696 * 116.99949 * 179.97438 * 22 20 18 34 34 H 1.08997 * 112.84756 * 316.20330 * 23 18 17 35 35 H 1.09005 * 113.61159 * 105.47197 * 24 23 18 36 36 H 1.08999 * 113.61887 * 334.56688 * 24 23 18 37 37 H 1.08997 * 113.61170 * 139.97815 * 25 24 23 38 38 H 1.09000 * 113.61930 * 270.80191 * 25 24 23 39 39 H 1.08997 * 113.61696 * 89.15470 * 26 25 24 40 40 H 1.08999 * 113.60979 * 220.06500 * 26 25 24 41 41 H 1.07999 * 120.12907 * 180.24849 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.3754 2.1126 -1.3938 5 1 1.5015 2.6170 0.8113 6 1 3.5923 1.4100 0.5826 7 6 2.0081 -1.2119 -0.0005 8 1 1.5089 -2.1237 0.2923 9 6 3.3686 -1.2425 -0.3845 10 6 3.8636 -0.3104 -1.3154 11 6 5.1892 -0.3499 -1.6822 12 6 6.0375 -1.2999 -1.1339 13 6 5.5596 -2.2265 -0.2206 14 16 6.6505 -3.4311 0.4602 15 8 6.0814 -3.8336 1.6985 16 8 7.9617 -2.8956 0.3450 17 7 6.5978 -4.7563 -0.5313 18 6 7.0865 -4.6603 -1.9090 19 1 7.8185 -3.8557 -1.9796 20 6 5.9315 -4.3710 -2.8329 21 8 4.8147 -4.2563 -2.3862 22 8 6.1436 -4.2397 -4.1518 23 6 7.7421 -5.9830 -2.3110 24 6 8.3983 -5.9478 -3.7014 25 6 7.8466 -7.3678 -3.9111 26 6 6.7536 -7.0120 -2.8894 27 6 4.2372 -2.2056 0.1609 28 1 -0.4850 0.8401 -0.0004 29 1 3.2055 0.4332 -1.7403 30 1 5.5714 0.3647 -2.3961 31 1 7.0776 -1.3206 -1.4240 32 1 6.2432 -5.5962 -0.2000 33 1 5.3718 -4.0548 -4.7042 34 1 8.3889 -6.3884 -1.5330 35 1 9.4869 -5.9026 -3.6694 36 1 7.9624 -5.2067 -4.3713 37 1 7.4638 -7.5434 -4.9164 38 1 8.5221 -8.1533 -3.5722 39 1 5.8673 -6.5623 -3.3369 40 1 6.5166 -7.8247 -2.2028 41 1 3.8678 -2.9260 0.8758 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470827.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:21 Heat of formation + Delta-G solvation = -147.452568 kcal Electronic energy + Delta-G solvation = -28400.527671 eV Core-core repulsion = 24371.850888 eV Total energy + Delta-G solvation = -4028.676783 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77417 -39.68541 -39.27726 -38.38623 -37.19054 -37.03453 -35.68524 -35.63977 -32.55918 -31.89692 -29.58139 -27.27146 -26.48412 -25.21461 -24.11314 -22.76187 -22.55885 -20.85398 -20.21908 -19.83967 -18.92521 -18.79820 -18.09169 -17.94083 -17.25997 -16.98402 -16.77921 -16.64552 -16.13764 -15.93659 -15.56536 -14.96537 -14.86734 -14.70496 -14.32346 -14.02702 -13.61542 -13.59691 -13.42194 -13.29893 -13.24048 -13.16012 -13.07532 -12.90893 -12.65376 -12.57454 -12.41953 -12.17381 -11.97437 -11.81013 -11.57741 -11.44277 -11.23125 -11.12358 -11.05727 -10.70046 -9.98692 -9.68508 -8.98533 -6.61205 -0.66827 0.18470 0.65069 1.17823 1.28385 1.33744 1.40671 1.70145 2.03143 2.21480 2.40185 2.66206 3.27263 3.30422 3.49273 3.58308 3.82026 3.97878 4.03438 4.15698 4.16236 4.29104 4.34793 4.41844 4.63144 4.73038 4.82847 4.87216 4.93191 5.03618 5.06083 5.14971 5.24693 5.32411 5.33986 5.41693 5.60190 5.69481 5.70994 5.74655 5.86779 5.98931 6.22328 6.58182 6.67581 7.04553 8.10332 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017048 B = 0.004074 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1642.004055 B = 6871.889723 C = 7434.828521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.048 3.952 3 Si 0.959 3.041 4 H -0.248 1.248 5 H -0.272 1.272 6 H -0.255 1.255 7 C -0.486 4.486 8 H 0.055 0.945 9 C 0.058 3.942 10 C -0.203 4.203 11 C -0.095 4.095 12 C -0.146 4.146 13 C -0.629 4.629 14 S 2.713 3.287 15 O -0.989 6.989 16 O -0.968 6.968 17 N -1.083 6.083 18 C 0.165 3.835 19 H 0.142 0.858 20 C 0.459 3.541 21 O -0.525 6.525 22 O -0.503 6.503 23 C -0.109 4.109 24 C -0.135 4.135 25 C -0.129 4.129 26 C -0.151 4.151 27 C -0.107 4.107 28 H 0.296 0.704 29 H 0.107 0.893 30 H 0.144 0.856 31 H 0.145 0.855 32 H 0.432 0.568 33 H 0.420 0.580 34 H 0.132 0.868 35 H 0.088 0.912 36 H 0.101 0.899 37 H 0.071 0.929 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.446 -10.177 -10.547 22.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.167 4.167 3 Si 0.782 3.218 4 H -0.172 1.172 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.055 3.945 10 C -0.223 4.223 11 C -0.114 4.114 12 C -0.167 4.167 13 C -0.717 4.717 14 S 2.805 3.195 15 O -0.979 6.979 16 O -0.958 6.958 17 N -0.843 5.843 18 C 0.055 3.945 19 H 0.159 0.841 20 C 0.299 3.701 21 O -0.413 6.413 22 O -0.316 6.316 23 C -0.128 4.128 24 C -0.173 4.173 25 C -0.166 4.166 26 C -0.188 4.188 27 C -0.128 4.128 28 H 0.107 0.893 29 H 0.125 0.875 30 H 0.161 0.839 31 H 0.162 0.838 32 H 0.269 0.731 33 H 0.282 0.718 34 H 0.150 0.850 35 H 0.107 0.893 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 17.745 -9.897 -9.457 22.412 hybrid contribution -2.227 0.685 -0.320 2.352 sum 15.518 -9.212 -9.777 20.525 Atomic orbital electron populations 1.69711 1.09143 1.31678 1.36428 1.26826 0.95405 1.04107 0.90333 0.85584 0.79625 0.76522 0.80102 1.17242 1.19837 1.17902 1.19468 0.94385 0.95853 1.41835 0.92704 1.17902 0.92720 0.92747 0.91164 1.21435 0.97140 1.02677 1.01033 1.21125 0.92709 0.98358 0.99171 1.20582 0.99673 0.97064 0.99343 1.30328 1.09763 1.18019 1.13633 1.01130 0.73176 0.72775 0.72405 1.93533 1.79845 1.82371 1.42146 1.93532 1.36480 1.79170 1.86602 1.55196 1.79026 1.27794 1.22256 1.20697 0.91041 1.04263 0.78467 0.84062 1.24201 0.90845 0.72285 0.82734 1.90878 1.26789 1.46195 1.77435 1.84463 1.45271 1.83026 1.18802 1.23047 0.98878 0.90928 0.99987 1.23160 1.01511 0.98271 0.94333 1.22731 0.97407 0.97309 0.99191 1.23153 0.97025 0.99079 0.99556 1.20764 0.91751 1.00884 0.99401 0.89326 0.87532 0.83860 0.83767 0.73128 0.71836 0.84963 0.89313 0.88101 0.90988 0.88687 0.91782 0.90450 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.77 13.93 21.83 0.30 -46.47 16 2 C 0.05 2.64 5.40 85.25 0.46 3.10 16 3 Si 0.96 42.54 24.52 68.60 1.68 44.22 16 4 H -0.25 -10.03 6.71 99.48 0.67 -9.36 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.26 -11.67 6.86 99.48 0.68 -10.99 16 7 C -0.49 -28.23 9.57 23.46 0.22 -28.00 16 8 H 0.05 3.46 8.06 -2.91 -0.02 3.43 16 9 C 0.06 3.06 5.10 -21.29 -0.11 2.96 16 10 C -0.20 -9.53 7.18 22.73 0.16 -9.37 16 11 C -0.09 -3.72 10.02 22.22 0.22 -3.50 16 12 C -0.15 -5.51 9.53 22.46 0.21 -5.30 16 13 C -0.63 -25.96 5.13 22.22 0.11 -25.85 16 14 S 2.71 92.90 5.72 -56.49 -0.32 92.58 16 15 O -0.99 -40.03 17.27 -128.00 -2.21 -42.24 16 16 O -0.97 -33.23 16.60 -128.00 -2.12 -35.35 16 17 N -1.08 -27.46 4.96 -172.51 -0.86 -28.32 16 18 C 0.16 3.50 2.97 44.25 0.13 3.63 16 19 H 0.14 2.69 7.50 -2.39 -0.02 2.67 16 20 C 0.46 11.53 5.61 71.24 0.40 11.93 16 21 O -0.53 -18.46 16.38 21.97 0.36 -18.10 16 22 O -0.50 -8.97 10.53 -51.37 -0.54 -9.51 16 23 C -0.11 -1.57 3.82 -10.21 -0.04 -1.60 16 24 C -0.13 -1.56 7.39 31.12 0.23 -1.33 16 25 C -0.13 -1.40 8.08 31.12 0.25 -1.14 16 26 C -0.15 -2.24 7.31 31.18 0.23 -2.01 16 27 C -0.11 -5.27 9.26 22.73 0.21 -5.06 16 28 H 0.30 14.62 8.30 -92.71 -0.77 13.85 16 29 H 0.11 4.88 4.73 -2.91 -0.01 4.86 16 30 H 0.14 4.41 8.06 -2.91 -0.02 4.38 16 31 H 0.14 4.41 7.59 -2.91 -0.02 4.38 16 32 H 0.43 9.27 8.84 -96.75 -0.85 8.41 16 33 H 0.42 5.30 9.10 -74.06 -0.67 4.63 16 34 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.10 1.30 5.66 -2.39 -0.01 1.29 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 1.19 6.06 -2.39 -0.01 1.17 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.10 5.24 7.60 -2.91 -0.02 5.22 16 Total: -1.00 -75.13 349.17 -1.49 -76.63 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.49 Total: 28.12 kcal Atomic # 6 Polarization: -64.26 SS G_CDS: 2.70 Total: -61.56 kcal Atomic # 7 Polarization: -74.23 SS G_CDS: -0.55 Total: -74.79 kcal Atomic # 8 Polarization: -100.69 SS G_CDS: -4.52 Total: -105.20 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 1.68 Total: 44.22 kcal Atomic # 16 Polarization: 92.90 SS G_CDS: -0.32 Total: 92.58 kcal Total: -75.13 -1.49 -76.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470827.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.823 kcal (2) G-P(sol) polarization free energy of solvation -75.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds