Wall clock time and date at job start Tue Mar 31 2020 22:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30824 * 1 3 3 Si 1.86796 * 119.99935 * 2 1 4 4 H 1.48499 * 109.47533 * 275.41823 * 3 2 1 5 5 H 1.48501 * 109.46978 * 35.42046 * 3 2 1 6 6 H 1.48505 * 109.46937 * 155.41369 * 3 2 1 7 7 C 1.39946 * 119.99884 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00196 * 341.72977 * 7 2 1 9 9 C 1.41403 * 119.99714 * 161.73161 * 7 2 1 10 10 C 1.40724 * 120.24424 * 330.21078 * 9 7 2 11 11 C 1.37596 * 119.74551 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24809 * 359.97438 * 11 10 9 13 13 C 1.38609 * 120.49971 * 359.97438 * 12 11 10 14 14 S 1.76209 * 119.87681 * 180.02562 * 13 12 11 15 15 O 1.42096 * 106.40300 * 203.53992 * 14 13 12 16 16 O 1.42101 * 106.39835 * 336.46141 * 14 13 12 17 17 N 1.65603 * 107.21557 * 89.99894 * 14 13 12 18 18 C 1.46925 * 120.63063 * 269.71582 * 17 14 13 19 19 C 1.53624 * 108.53830 * 126.37207 * 18 17 14 20 20 C 1.53038 * 109.24037 * 54.86142 * 19 18 17 21 21 C 1.53031 * 109.53662 * 298.50576 * 20 19 18 22 22 H 1.09002 * 109.49953 * 301.41438 * 21 20 19 23 23 C 1.50706 * 109.52503 * 181.33589 * 21 20 19 24 24 O 1.20823 * 119.99813 * 240.14798 * 23 21 20 25 25 O 1.34225 * 120.00110 * 60.14350 * 23 21 20 26 26 C 1.46922 * 120.62889 * 90.00707 * 17 14 13 27 27 C 1.37642 * 120.25214 * 0.02562 * 13 12 11 28 28 H 0.96995 * 120.00093 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.13486 * 0.03978 * 10 9 7 30 30 H 1.08004 * 119.87932 * 179.97438 * 11 10 9 31 31 H 1.07996 * 119.75112 * 180.27797 * 12 11 10 32 32 H 1.08999 * 109.58951 * 246.21050 * 18 17 14 33 33 H 1.09006 * 109.58781 * 6.63345 * 18 17 14 34 34 H 1.08997 * 109.63701 * 294.86378 * 19 18 17 35 35 H 1.09009 * 109.42753 * 174.72573 * 19 18 17 36 36 H 1.09002 * 109.45650 * 178.48396 * 20 19 18 37 37 H 1.08993 * 109.44984 * 58.52586 * 20 19 18 38 38 H 0.96695 * 117.00471 * 180.02562 * 25 23 21 39 39 H 1.09000 * 109.58652 * 353.36238 * 26 17 14 40 40 H 1.09001 * 109.58798 * 113.79600 * 26 17 14 41 41 H 1.07997 * 120.13051 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3753 2.1126 -1.3938 5 1 1.5016 2.6168 0.8115 6 1 3.5923 1.4098 0.5825 7 6 2.0079 -1.2120 -0.0005 8 1 1.5088 -2.1239 0.2923 9 6 3.3685 -1.2426 -0.3844 10 6 3.8635 -0.3106 -1.3153 11 6 5.1891 -0.3501 -1.6820 12 6 6.0363 -1.3032 -1.1375 13 6 5.5599 -2.2254 -0.2190 14 16 6.6512 -3.4291 0.4630 15 8 5.8372 -4.5129 0.8894 16 8 7.7172 -3.5758 -0.4650 17 7 7.3107 -2.7725 1.8328 18 6 8.5631 -2.0069 1.7679 19 6 8.3319 -0.6360 2.4214 20 6 7.7918 -0.8377 3.8391 21 6 6.4512 -1.5729 3.7761 22 1 5.7474 -0.9955 3.1766 23 6 5.9037 -1.7424 5.1700 24 8 5.6996 -2.8497 5.6083 25 8 5.6430 -0.6633 5.9244 26 6 6.6579 -2.9498 3.1371 27 6 4.2375 -2.2046 0.1624 28 1 -0.4850 0.8400 0.0004 29 1 3.2056 0.4331 -1.7402 30 1 5.5712 0.3640 -2.3966 31 1 7.0764 -1.3240 -1.4276 32 1 9.3470 -2.5426 2.3033 33 1 8.8555 -1.8722 0.7265 34 1 7.6105 -0.0674 1.8346 35 1 9.2754 -0.0917 2.4656 36 1 7.6519 0.1325 4.3158 37 1 8.5026 -1.4274 4.4178 38 1 5.2934 -0.8221 6.8118 39 1 5.6928 -3.4373 2.9994 40 1 7.2897 -3.5607 3.7819 41 1 3.8683 -2.9244 0.8779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470894.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:47 Heat of formation + Delta-G solvation = -152.769593 kcal Electronic energy + Delta-G solvation = -28364.887181 eV Core-core repulsion = 24335.979834 eV Total energy + Delta-G solvation = -4028.907347 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61295 -38.23331 -37.96617 -36.90874 -36.21300 -35.46930 -33.83705 -32.76929 -31.45565 -30.78028 -30.21955 -25.45089 -25.10440 -24.66369 -22.44821 -21.82117 -20.95779 -20.36036 -18.86382 -18.35154 -17.98528 -17.28364 -16.53614 -16.35031 -15.89546 -15.70795 -15.41549 -14.88606 -14.69648 -14.50944 -13.95972 -13.82958 -13.62182 -13.54563 -13.19569 -12.95227 -12.86387 -12.32101 -11.95848 -11.89704 -11.79619 -11.77888 -11.68446 -11.59457 -11.55897 -11.22635 -11.12575 -11.08713 -10.89499 -10.67560 -10.45977 -10.35692 -10.06586 -9.81295 -9.42407 -8.97566 -8.32590 -7.93682 -7.13714 -4.69455 0.76170 1.84373 2.09862 2.35875 2.82277 2.93524 3.05087 3.11395 3.32609 3.78248 4.06595 4.20621 4.40534 4.55978 4.64872 4.72405 4.91516 5.04981 5.12379 5.15420 5.32114 5.36549 5.59509 5.65320 5.66010 5.75724 5.82383 5.85712 5.94617 6.09352 6.13585 6.14730 6.35948 6.39933 6.44173 6.64888 6.81308 7.02732 7.13859 7.33537 7.56888 7.72247 7.77452 8.13822 8.37314 8.56043 9.88211 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009942 B = 0.005453 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2815.634837 B = 5133.485004 C = 6475.389145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.798 5.798 2 C 0.083 3.917 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.244 1.244 7 C -0.443 4.443 8 H 0.096 0.904 9 C 0.074 3.926 10 C -0.197 4.197 11 C -0.091 4.091 12 C -0.157 4.157 13 C -0.625 4.625 14 S 2.685 3.315 15 O -0.962 6.962 16 O -0.966 6.966 17 N -0.999 5.999 18 C 0.119 3.881 19 C -0.136 4.136 20 C -0.105 4.105 21 C -0.101 4.101 22 H 0.123 0.877 23 C 0.490 3.510 24 O -0.513 6.513 25 O -0.514 6.514 26 C 0.140 3.860 27 C -0.106 4.106 28 H 0.288 0.712 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.111 0.889 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.409 0.591 39 H 0.103 0.897 40 H 0.083 0.917 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.850 3.236 8.230 16.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.137 4.137 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.167 1.167 7 C -0.471 4.471 8 H 0.114 0.886 9 C 0.070 3.930 10 C -0.217 4.217 11 C -0.111 4.111 12 C -0.178 4.178 13 C -0.716 4.716 14 S 2.782 3.218 15 O -0.952 6.952 16 O -0.957 6.957 17 N -0.835 5.835 18 C -0.006 4.006 19 C -0.175 4.175 20 C -0.143 4.143 21 C -0.122 4.122 22 H 0.141 0.859 23 C 0.331 3.669 24 O -0.401 6.401 25 O -0.325 6.325 26 C 0.014 3.986 27 C -0.127 4.127 28 H 0.099 0.901 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.268 0.732 39 H 0.121 0.879 40 H 0.101 0.899 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 13.866 2.210 7.658 15.994 hybrid contribution -0.665 1.478 0.480 1.691 sum 13.202 3.688 8.139 15.941 Atomic orbital electron populations 1.69682 1.08078 1.30548 1.33823 1.26180 0.94785 1.01736 0.91018 0.86353 0.81329 0.79859 0.79062 1.19438 1.21368 1.16698 1.19548 0.92835 0.96440 1.38288 0.88612 1.17785 0.93216 0.91410 0.90591 1.21293 0.95686 1.03308 1.01379 1.20703 0.93905 0.97623 0.98825 1.20029 0.98682 0.97722 1.01355 1.30029 1.09943 1.18532 1.13079 1.01969 0.73446 0.74286 0.72117 1.93552 1.69580 1.50525 1.81580 1.93518 1.55091 1.85937 1.61126 1.57868 1.34025 1.70389 1.21228 1.21558 0.85032 0.91350 1.02686 1.22033 1.02286 0.97418 0.95742 1.21446 0.93952 1.00723 0.98151 1.21501 1.00042 1.00816 0.89848 0.85949 1.23308 0.73920 0.81812 0.87855 1.90739 1.49259 1.26780 1.73281 1.84536 1.77524 1.38898 1.31591 1.21180 0.99746 0.93888 0.83767 1.20870 0.90730 1.00816 1.00254 0.90146 0.87637 0.87894 0.87119 0.90922 0.88673 0.90299 0.90132 0.90239 0.91225 0.73216 0.87915 0.89908 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.30 13.93 55.55 0.77 -19.53 16 2 C 0.08 2.06 5.40 -17.34 -0.09 1.97 16 3 Si 0.91 19.31 24.52 -169.99 -4.17 15.14 16 4 H -0.27 -5.53 6.71 56.52 0.38 -5.16 16 5 H -0.29 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.24 -5.19 6.86 56.52 0.39 -4.80 16 7 C -0.44 -11.41 9.57 -37.74 -0.36 -11.77 16 8 H 0.10 2.60 8.06 -52.49 -0.42 2.17 16 9 C 0.07 1.78 5.10 -106.82 -0.55 1.24 16 10 C -0.20 -4.45 7.18 -38.88 -0.28 -4.73 16 11 C -0.09 -1.83 10.02 -39.66 -0.40 -2.23 16 12 C -0.16 -3.05 9.53 -39.29 -0.37 -3.43 16 13 C -0.62 -12.50 5.97 -39.66 -0.24 -12.73 16 14 S 2.69 47.53 5.69 -107.50 -0.61 46.92 16 15 O -0.96 -19.44 15.98 -57.17 -0.91 -20.36 16 16 O -0.97 -18.19 15.97 -57.17 -0.91 -19.11 16 17 N -1.00 -13.74 3.28 -113.27 -0.37 -14.11 16 18 C 0.12 1.28 6.41 -3.49 -0.02 1.25 16 19 C -0.14 -1.25 6.10 -26.39 -0.16 -1.41 16 20 C -0.11 -0.96 5.11 -26.70 -0.14 -1.10 16 21 C -0.10 -1.19 2.78 -91.65 -0.25 -1.45 16 22 H 0.12 1.55 8.14 -51.93 -0.42 1.12 16 23 C 0.49 5.91 7.63 36.01 0.27 6.19 16 24 O -0.51 -7.58 16.68 -18.75 -0.31 -7.90 16 25 O -0.51 -4.92 13.31 -39.24 -0.52 -5.44 16 26 C 0.14 1.86 5.01 -3.71 -0.02 1.84 16 27 C -0.11 -2.35 9.26 -38.87 -0.36 -2.71 16 28 H 0.29 6.59 8.30 -40.82 -0.34 6.26 16 29 H 0.11 2.35 4.73 -52.49 -0.25 2.10 16 30 H 0.10 1.75 8.06 -52.48 -0.42 1.32 16 31 H 0.11 1.89 7.60 -52.49 -0.40 1.49 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.10 1.03 7.12 -51.93 -0.37 0.66 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.08 0.67 8.09 -51.93 -0.42 0.25 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.41 2.19 9.10 45.56 0.41 2.61 16 39 H 0.10 1.52 7.13 -51.93 -0.37 1.15 16 40 H 0.08 1.00 7.96 -51.93 -0.41 0.58 16 41 H 0.12 2.55 7.60 -52.49 -0.40 2.15 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -31.78 349.54 -9.07 -40.85 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -4.33 Total: 7.32 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -2.97 Total: -29.06 kcal Atomic # 7 Polarization: -34.05 SS G_CDS: 0.40 Total: -33.64 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -2.66 Total: -52.80 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.17 Total: 15.14 kcal Atomic # 16 Polarization: 47.53 SS G_CDS: -0.61 Total: 46.92 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.78 -9.07 -40.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470894.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.919 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds