Wall clock time and date at job start Tue Mar 31 2020 22:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30819 * 1 3 3 Si 1.86803 * 120.00096 * 2 1 4 4 H 1.48501 * 109.47559 * 240.00398 * 3 2 1 5 5 H 1.48503 * 109.46849 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47134 * 119.99813 * 3 2 1 7 7 C 1.39945 * 120.00428 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00334 * 197.86090 * 7 2 1 9 9 C 1.41396 * 119.99663 * 17.85676 * 7 2 1 10 10 C 1.40725 * 120.24545 * 24.36652 * 9 7 2 11 11 C 1.37603 * 119.74730 * 180.02562 * 10 9 7 12 12 C 1.38660 * 120.24415 * 359.97438 * 11 10 9 13 13 C 1.38616 * 120.50138 * 359.72800 * 12 11 10 14 14 S 1.76202 * 119.87353 * 180.29940 * 13 12 11 15 15 O 1.42101 * 106.40061 * 23.79810 * 14 13 12 16 16 O 1.42102 * 106.39930 * 156.71055 * 14 13 12 17 17 N 1.65594 * 107.21851 * 270.25416 * 14 13 12 18 18 C 1.46925 * 120.62896 * 269.72167 * 17 14 13 19 19 C 1.52767 * 109.00819 * 233.58566 * 18 17 14 20 20 C 1.53047 * 109.38153 * 305.58670 * 19 18 17 21 21 C 1.50698 * 109.44485 * 181.25118 * 20 19 18 22 22 O 1.20826 * 120.00128 * 239.93363 * 21 20 19 23 23 O 1.34232 * 120.00176 * 59.94618 * 21 20 19 24 24 C 1.53044 * 109.53415 * 61.24060 * 20 19 18 25 25 C 1.46928 * 120.63122 * 90.00235 * 17 14 13 26 26 C 1.37630 * 120.24855 * 0.55462 * 13 12 11 27 27 H 0.97002 * 119.99915 * 359.97438 * 1 2 3 28 28 H 1.07999 * 120.13042 * 0.04817 * 10 9 7 29 29 H 1.07994 * 119.87768 * 179.97438 * 11 10 9 30 30 H 1.07998 * 119.74808 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.58970 * 353.41471 * 18 17 14 32 32 H 1.08996 * 109.59118 * 113.84843 * 18 17 14 33 33 H 1.09002 * 109.56592 * 185.55556 * 19 18 17 34 34 H 1.09000 * 109.38917 * 65.51317 * 19 18 17 35 35 H 1.08990 * 109.45893 * 301.22110 * 20 19 18 36 36 H 0.96692 * 117.00165 * 179.97438 * 23 21 20 37 37 H 1.09004 * 109.49503 * 178.68295 * 24 20 19 38 38 H 1.08998 * 109.52403 * 58.60215 * 24 20 19 39 39 H 1.09001 * 109.58464 * 246.15671 * 25 17 14 40 40 H 1.08992 * 109.58618 * 6.43845 * 25 17 14 41 41 H 1.08004 * 120.12824 * 179.71933 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6965 -1.2125 5 1 1.2772 2.7465 0.0006 6 1 3.0959 1.6964 1.2125 7 6 2.0080 -1.2119 -0.0005 8 1 3.0489 -1.2346 0.2863 9 6 1.3521 -2.4068 -0.3766 10 6 0.2206 -2.3616 -1.2120 11 6 -0.4101 -3.5306 -1.5711 12 6 0.0658 -4.7500 -1.1135 13 6 1.1832 -4.8068 -0.2952 14 16 1.7783 -6.3659 0.2704 15 8 1.3193 -7.3334 -0.6636 16 8 3.1514 -6.1806 0.5861 17 7 1.0100 -6.6946 1.7000 18 6 1.5925 -6.2654 2.9788 19 6 1.7002 -7.4739 3.9071 20 6 0.3287 -8.1413 4.0331 21 6 0.4266 -9.3154 4.9727 22 8 0.1551 -10.4261 4.5821 23 8 0.8152 -9.1274 6.2438 24 6 -0.1327 -8.6266 2.6570 25 6 -0.2640 -7.4263 1.7142 26 6 1.8263 -3.6498 0.0814 27 1 -0.4850 0.8401 0.0004 28 1 -0.1513 -1.4130 -1.5702 29 1 -1.2789 -3.4984 -2.2118 30 1 -0.4352 -5.6626 -1.4007 31 1 2.5850 -5.8489 2.8069 32 1 0.9522 -5.5119 3.4374 33 1 2.0386 -7.1493 4.8911 34 1 2.4144 -8.1856 3.4931 35 1 -0.3906 -7.4220 4.4245 36 1 0.8625 -9.9106 6.8088 37 1 -1.0988 -9.1225 2.7512 38 1 0.5983 -9.3275 2.2540 39 1 -1.0588 -6.7693 2.0675 40 1 -0.4972 -7.7734 0.7077 41 1 2.6941 -3.6961 0.7228 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470895.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:54 Heat of formation + Delta-G solvation = -177.524738 kcal Electronic energy + Delta-G solvation = -27432.217412 eV Core-core repulsion = 23402.236602 eV Total energy + Delta-G solvation = -4029.980811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.49553 -39.42446 -39.14276 -38.33499 -37.07953 -36.90534 -35.65442 -33.79701 -32.12618 -31.89378 -31.56391 -27.32729 -26.96264 -24.43476 -23.63603 -23.05464 -22.76921 -21.26296 -20.23554 -19.34878 -19.02135 -18.68699 -17.71988 -17.50892 -17.10986 -16.85371 -16.57316 -16.49422 -15.75644 -15.39313 -15.18728 -15.03195 -14.82031 -14.53381 -14.49114 -14.28475 -13.69509 -13.55479 -13.43363 -13.30250 -13.08698 -13.04067 -12.97669 -12.80419 -12.59461 -12.57199 -12.46654 -12.21171 -12.19404 -11.76744 -11.67794 -11.54469 -11.40022 -11.29758 -11.12308 -10.06591 -9.79426 -9.54518 -8.71881 -6.43656 -0.53866 0.42395 0.86375 1.21329 1.38808 1.47682 1.51234 2.03125 2.16536 2.18573 2.58664 2.77470 3.35198 3.51508 3.59506 3.68468 3.95367 4.06593 4.14046 4.32141 4.38546 4.43740 4.46685 4.69015 4.73933 4.79078 4.80785 4.86279 4.89833 4.93032 5.08450 5.10155 5.19851 5.21677 5.27577 5.42426 5.57861 5.64174 5.68198 5.90527 5.95468 6.11680 6.54000 6.81323 6.86247 7.02502 8.25621 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.003126 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.476327 B = 8955.997590 C = 9674.130609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.040 3.960 3 Si 0.981 3.019 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.258 1.258 7 C -0.498 4.498 8 H 0.079 0.921 9 C 0.064 3.936 10 C -0.143 4.143 11 C -0.123 4.123 12 C -0.149 4.149 13 C -0.637 4.637 14 S 2.711 3.289 15 O -0.985 6.985 16 O -0.990 6.990 17 N -0.995 5.995 18 C 0.111 3.889 19 C -0.116 4.116 20 C -0.078 4.078 21 C 0.491 3.509 22 O -0.551 6.551 23 O -0.509 6.509 24 C -0.113 4.113 25 C 0.114 3.886 26 C -0.144 4.144 27 H 0.292 0.708 28 H 0.113 0.887 29 H 0.126 0.874 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.064 0.936 35 H 0.139 0.861 36 H 0.427 0.573 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 -10.222 10.873 15.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.176 4.176 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.182 1.182 7 C -0.527 4.527 8 H 0.098 0.902 9 C 0.061 3.939 10 C -0.163 4.163 11 C -0.142 4.142 12 C -0.170 4.170 13 C -0.726 4.726 14 S 2.806 3.194 15 O -0.976 6.976 16 O -0.980 6.980 17 N -0.835 5.835 18 C -0.013 4.013 19 C -0.155 4.155 20 C -0.097 4.097 21 C 0.335 3.665 22 O -0.442 6.442 23 O -0.322 6.322 24 C -0.152 4.152 25 C -0.010 4.010 26 C -0.165 4.165 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.132 0.868 34 H 0.082 0.918 35 H 0.156 0.844 36 H 0.288 0.712 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.137 -10.557 10.135 14.790 hybrid contribution -0.054 0.886 0.129 0.897 sum -2.191 -9.672 10.264 14.272 Atomic orbital electron populations 1.69804 1.08867 1.31016 1.34863 1.26705 0.95511 1.04365 0.91031 0.85261 0.78858 0.75623 0.80109 1.18779 1.18995 1.18210 1.19837 0.98586 0.92265 1.42022 0.90250 1.18028 0.92563 0.92970 0.90383 1.21647 0.98429 0.97640 0.98559 1.21139 0.99905 0.92695 1.00459 1.20448 0.96859 0.97954 1.01741 1.30319 1.09079 1.19288 1.13877 1.01042 0.72663 0.73193 0.72528 1.93476 1.82456 1.59527 1.62115 1.93480 1.32957 1.87269 1.84324 1.57570 1.35588 1.69852 1.20496 1.21594 1.00043 0.97239 0.82440 1.21796 0.94832 0.97204 1.01713 1.21085 1.01328 0.94262 0.93012 1.23607 0.71117 0.90110 0.81633 1.90721 1.47654 1.28036 1.77756 1.84505 1.79569 1.45413 1.22722 1.21767 1.03531 0.97191 0.92715 1.21685 0.84438 0.93069 1.01856 1.20850 1.01114 0.91928 1.02637 0.89735 0.86963 0.85658 0.85156 0.89119 0.88826 0.86831 0.91757 0.84384 0.71183 0.88397 0.92018 0.88608 0.88702 0.87024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.24 10.95 21.83 0.24 -40.00 16 2 C 0.04 1.90 5.14 85.26 0.44 2.34 16 3 Si 0.98 36.32 29.60 68.60 2.03 38.35 16 4 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 5 H -0.27 -9.23 7.11 99.48 0.71 -8.53 16 6 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 7 C -0.50 -25.81 9.05 23.46 0.21 -25.60 16 8 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 9 C 0.06 3.32 5.58 -21.29 -0.12 3.20 16 10 C -0.14 -7.16 8.70 22.73 0.20 -6.96 16 11 C -0.12 -5.38 10.02 22.22 0.22 -5.16 16 12 C -0.15 -6.22 9.53 22.46 0.21 -6.00 16 13 C -0.64 -27.07 5.96 22.22 0.13 -26.94 16 14 S 2.71 98.03 5.72 -56.49 -0.32 97.71 16 15 O -0.99 -38.21 15.86 -128.00 -2.03 -40.24 16 16 O -0.99 -40.17 15.85 -128.00 -2.03 -42.20 16 17 N -1.00 -26.76 3.30 -513.85 -1.69 -28.45 16 18 C 0.11 2.47 6.45 86.22 0.56 3.03 16 19 C -0.12 -2.00 5.28 30.53 0.16 -1.84 16 20 C -0.08 -1.25 2.59 -11.51 -0.03 -1.28 16 21 C 0.49 8.62 7.63 71.24 0.54 9.17 16 22 O -0.55 -13.45 16.74 21.96 0.37 -13.08 16 23 O -0.51 -6.08 13.30 -51.44 -0.68 -6.76 16 24 C -0.11 -2.15 4.65 30.67 0.14 -2.01 16 25 C 0.11 2.46 6.48 86.36 0.56 3.02 16 26 C -0.14 -6.89 9.26 22.73 0.21 -6.68 16 27 H 0.29 12.90 8.30 -92.71 -0.77 12.13 16 28 H 0.11 5.78 6.16 -2.91 -0.02 5.76 16 29 H 0.13 4.66 8.06 -2.91 -0.02 4.63 16 30 H 0.13 4.70 7.60 -2.91 -0.02 4.68 16 31 H 0.09 2.25 6.91 -2.39 -0.02 2.23 16 32 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.11 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.43 1.73 9.10 -74.06 -0.67 1.06 16 37 H 0.10 1.63 8.07 -2.39 -0.02 1.61 16 38 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 39 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.09 2.18 6.92 -2.39 -0.02 2.16 16 41 H 0.11 5.13 7.60 -2.91 -0.02 5.11 16 Total: -1.00 -69.80 354.36 -0.28 -70.08 By element: Atomic # 1 Polarization: 25.88 SS G_CDS: 0.40 Total: 26.28 kcal Atomic # 6 Polarization: -65.14 SS G_CDS: 3.44 Total: -61.70 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -1.45 Total: -68.45 kcal Atomic # 8 Polarization: -97.90 SS G_CDS: -4.38 Total: -102.27 kcal Atomic # 14 Polarization: 36.32 SS G_CDS: 2.03 Total: 38.35 kcal Atomic # 16 Polarization: 98.03 SS G_CDS: -0.32 Total: 97.71 kcal Total: -69.80 -0.28 -70.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470895.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.441 kcal (2) G-P(sol) polarization free energy of solvation -69.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds