Wall clock time and date at job start Tue Mar 31 2020 22:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86795 * 119.99935 * 2 1 4 4 H 1.48495 * 109.47214 * 240.00220 * 3 2 1 5 5 H 1.48502 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47083 * 120.00255 * 3 2 1 7 7 C 1.39942 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99559 * 197.74494 * 7 2 1 9 9 C 1.41390 * 120.00599 * 17.73850 * 7 2 1 10 10 C 1.40736 * 120.24206 * 23.99884 * 9 7 2 11 11 C 1.37598 * 119.74787 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24338 * 359.72652 * 11 10 9 13 13 C 1.38606 * 120.50498 * 0.54470 * 12 11 10 14 14 S 1.76198 * 119.87807 * 179.72561 * 13 12 11 15 15 O 1.42099 * 106.40594 * 156.18838 * 14 13 12 16 16 O 1.42100 * 106.40218 * 23.27128 * 14 13 12 17 17 N 1.65601 * 107.21726 * 269.73151 * 14 13 12 18 18 C 1.46927 * 120.62932 * 81.53360 * 17 14 13 19 19 C 1.53190 * 108.77096 * 233.58266 * 18 17 14 20 20 C 1.53043 * 109.31650 * 305.36344 * 19 18 17 21 21 C 1.53042 * 109.53547 * 61.36671 * 20 19 18 22 22 C 1.46926 * 120.62932 * 261.50665 * 17 14 13 23 23 H 1.09006 * 109.58688 * 246.34854 * 22 17 14 24 24 C 1.50704 * 109.58821 * 6.62507 * 22 17 14 25 25 O 1.20825 * 119.99277 * 77.39113 * 24 22 17 26 26 O 1.34227 * 120.00098 * 257.67238 * 24 22 17 27 27 C 1.37642 * 120.24769 * 359.45415 * 13 12 11 28 28 H 0.96998 * 119.99999 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.12793 * 0.03612 * 10 9 7 30 30 H 1.08000 * 119.87146 * 180.02562 * 11 10 9 31 31 H 1.08006 * 119.74660 * 180.29884 * 12 11 10 32 32 H 1.08990 * 109.58873 * 353.36932 * 18 17 14 33 33 H 1.08999 * 109.58942 * 113.65358 * 18 17 14 34 34 H 1.08997 * 109.50110 * 65.31807 * 19 18 17 35 35 H 1.09004 * 109.50116 * 185.38055 * 19 18 17 36 36 H 1.09003 * 109.46385 * 181.38428 * 20 19 18 37 37 H 1.08997 * 109.46103 * 301.34730 * 20 19 18 38 38 H 1.09000 * 109.50112 * 178.68759 * 21 20 19 39 39 H 1.08999 * 109.49766 * 58.58573 * 21 20 19 40 40 H 0.96697 * 116.99508 * 179.72821 * 26 24 22 41 41 H 1.07995 * 120.12826 * 180.28753 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0494 -1.2343 0.2845 9 6 1.3515 -2.4072 -0.3741 10 6 0.2138 -2.3623 -1.2013 11 6 -0.4174 -3.5317 -1.5582 12 6 0.0668 -4.7515 -1.1106 13 6 1.1831 -4.8073 -0.2909 14 16 1.7800 -6.3658 0.2742 15 8 3.1555 -6.1818 0.5801 16 8 1.3133 -7.3349 -0.6544 17 7 1.0210 -6.6901 1.7098 18 6 -0.3362 -7.2526 1.7286 19 6 -1.2261 -6.3639 2.6032 20 6 -0.5886 -6.2142 3.9865 21 6 0.7795 -5.5420 3.8494 22 6 1.6921 -6.4214 2.9889 23 1 1.8879 -7.3621 3.5036 24 6 2.9930 -5.7039 2.7359 25 8 2.9913 -4.5243 2.4744 26 8 4.1531 -6.3765 2.7955 27 6 1.8305 -3.6502 0.0786 28 1 -0.4850 0.8400 0.0004 29 1 -0.1623 -1.4136 -1.5549 30 1 -1.2904 -3.4996 -2.1933 31 1 -0.4321 -5.6647 -1.3995 32 1 -0.7337 -7.2820 0.7142 33 1 -0.3079 -8.2619 2.1393 34 1 -1.3264 -5.3820 2.1407 35 1 -2.2106 -6.8210 2.7035 36 1 -1.2320 -5.6023 4.6187 37 1 -0.4659 -7.1985 4.4382 38 1 1.2229 -5.4146 4.8370 39 1 0.6603 -4.5679 3.3751 40 1 4.9610 -5.8744 2.6219 41 1 2.7029 -3.6963 0.7135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619470941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:20 Heat of formation + Delta-G solvation = -139.703204 kcal Electronic energy + Delta-G solvation = -29239.943697 eV Core-core repulsion = 25211.602951 eV Total energy + Delta-G solvation = -4028.340746 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.28645 -38.04132 -37.56520 -36.77264 -35.57502 -35.46493 -33.78385 -32.53344 -31.46762 -29.99762 -29.72047 -25.48922 -25.41546 -23.98607 -21.90989 -21.49276 -20.88670 -20.41216 -18.70225 -18.02894 -17.80269 -17.14368 -16.22124 -16.00031 -15.79638 -15.21369 -14.97961 -14.69525 -14.45769 -14.38379 -13.99770 -13.63560 -13.40858 -13.34283 -12.97911 -12.67617 -12.49590 -11.91091 -11.82376 -11.68905 -11.55547 -11.44717 -11.36169 -11.31680 -11.16429 -11.03765 -10.91274 -10.87468 -10.69217 -10.60918 -10.45982 -10.03145 -9.72660 -9.52324 -9.28031 -8.93146 -7.97023 -7.62387 -6.86130 -4.44383 0.80719 2.21556 2.45745 2.71974 3.02393 3.05601 3.10705 3.14941 3.48815 3.87833 4.13802 4.45423 4.57559 4.64705 4.85273 4.97432 5.05560 5.19528 5.24997 5.47945 5.49457 5.57862 5.67583 5.71499 5.85727 6.01886 6.09387 6.13130 6.19052 6.25195 6.40774 6.50877 6.77059 6.83393 6.94847 7.08062 7.13924 7.29037 7.49492 7.78722 7.90619 8.02296 8.32123 8.49853 8.74517 8.80674 10.09237 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.004865 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.091422 B = 5754.300664 C = 6071.552092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.075 3.925 3 Si 0.911 3.089 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.089 3.911 10 C -0.123 4.123 11 C -0.121 4.121 12 C -0.154 4.154 13 C -0.633 4.633 14 S 2.677 3.323 15 O -0.957 6.957 16 O -0.967 6.967 17 N -0.991 5.991 18 C 0.128 3.872 19 C -0.141 4.141 20 C -0.111 4.111 21 C -0.127 4.127 22 C 0.171 3.829 23 H 0.102 0.898 24 C 0.471 3.529 25 O -0.488 6.488 26 O -0.505 6.505 27 C -0.105 4.105 28 H 0.282 0.718 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.411 0.589 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 -10.227 7.961 13.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.085 3.915 10 C -0.143 4.143 11 C -0.140 4.140 12 C -0.176 4.176 13 C -0.727 4.727 14 S 2.777 3.223 15 O -0.947 6.947 16 O -0.957 6.957 17 N -0.829 5.829 18 C 0.004 3.996 19 C -0.180 4.180 20 C -0.148 4.148 21 C -0.166 4.166 22 C 0.063 3.937 23 H 0.120 0.880 24 C 0.312 3.688 25 O -0.375 6.375 26 O -0.316 6.316 27 C -0.126 4.126 28 H 0.093 0.907 29 H 0.142 0.858 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.110 0.890 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.270 0.730 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.394 -10.569 7.592 13.087 hybrid contribution 0.334 1.819 -0.122 1.854 sum -1.059 -8.750 7.469 11.553 Atomic orbital electron populations 1.69780 1.07604 1.29513 1.35210 1.25918 0.94771 1.01441 0.92154 0.86318 0.80141 0.79894 0.80156 1.18735 1.20290 1.18850 1.19575 0.98303 0.90924 1.39478 0.90052 1.17705 0.91862 0.92090 0.89835 1.21640 0.97824 0.97115 0.97672 1.20753 0.99324 0.93090 1.00861 1.20004 0.97265 0.97166 1.03122 1.29556 1.10273 1.17646 1.15193 1.02059 0.73258 0.75024 0.71947 1.93406 1.31861 1.87562 1.81893 1.93510 1.81960 1.59945 1.60310 1.57862 1.27069 1.78862 1.19151 1.21426 0.79736 0.96561 1.01894 1.21973 0.98382 1.01683 0.95924 1.21423 0.95570 1.00702 0.97138 1.21922 0.95069 1.00291 0.99337 1.20425 0.87248 0.99741 0.86286 0.88034 1.22670 0.86017 0.86409 0.73718 1.90752 1.87369 1.16859 1.42550 1.84318 1.17210 1.46869 1.83187 1.21248 1.00556 0.91135 0.99678 0.90678 0.85772 0.88536 0.87980 0.88978 0.90849 0.90289 0.90580 0.91086 0.91759 0.90437 0.88932 0.72995 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.10 10.92 55.55 0.61 -19.49 16 2 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 3 Si 0.91 18.65 29.59 -169.99 -5.03 13.62 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.45 -12.11 9.06 -37.75 -0.34 -12.45 16 8 H 0.08 2.13 7.91 -52.49 -0.41 1.71 16 9 C 0.09 2.38 5.58 -106.83 -0.60 1.78 16 10 C -0.12 -3.14 8.70 -38.87 -0.34 -3.47 16 11 C -0.12 -2.78 10.02 -39.66 -0.40 -3.17 16 12 C -0.15 -3.43 9.53 -39.29 -0.37 -3.81 16 13 C -0.63 -14.39 5.97 -39.66 -0.24 -14.63 16 14 S 2.68 52.37 5.28 -107.50 -0.57 51.81 16 15 O -0.96 -19.82 12.03 -70.07 -0.84 -20.66 16 16 O -0.97 -20.06 16.28 -57.17 -0.93 -20.99 16 17 N -0.99 -15.26 3.29 -107.70 -0.35 -15.62 16 18 C 0.13 1.59 6.35 -3.71 -0.02 1.56 16 19 C -0.14 -1.57 6.08 -26.61 -0.16 -1.73 16 20 C -0.11 -1.11 5.88 -26.69 -0.16 -1.27 16 21 C -0.13 -1.60 5.20 -26.61 -0.14 -1.74 16 22 C 0.17 2.37 3.39 -68.75 -0.23 2.14 16 23 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 24 C 0.47 7.84 4.29 36.01 0.15 8.00 16 25 O -0.49 -9.82 13.03 -25.94 -0.34 -10.16 16 26 O -0.50 -7.34 12.32 -46.80 -0.58 -7.92 16 27 C -0.11 -2.65 8.70 -38.87 -0.34 -2.99 16 28 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 29 H 0.12 3.22 6.12 -52.48 -0.32 2.90 16 30 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 31 H 0.10 2.04 7.59 -52.48 -0.40 1.64 16 32 H 0.09 1.18 7.37 -51.93 -0.38 0.80 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.09 1.47 7.72 -51.93 -0.40 1.07 16 40 H 0.41 4.75 9.10 45.56 0.41 5.17 16 41 H 0.13 3.34 4.75 -52.49 -0.25 3.09 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -32.25 341.89 -10.42 -42.67 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -4.27 Total: 11.60 kcal Atomic # 6 Polarization: -26.74 SS G_CDS: -3.27 Total: -30.01 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: 0.25 Total: -35.11 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -2.69 Total: -59.73 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.57 Total: 51.81 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.25 -10.42 -42.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.033 kcal (2) G-P(sol) polarization free energy of solvation -32.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds