Wall clock time and date at job start Tue Mar 31 2020 22:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86795 * 119.99935 * 2 1 4 4 H 1.48495 * 109.47214 * 240.00220 * 3 2 1 5 5 H 1.48502 * 109.47303 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47083 * 120.00255 * 3 2 1 7 7 C 1.39942 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99559 * 197.74494 * 7 2 1 9 9 C 1.41390 * 120.00599 * 17.73850 * 7 2 1 10 10 C 1.40736 * 120.24206 * 23.99884 * 9 7 2 11 11 C 1.37598 * 119.74787 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24338 * 359.72652 * 11 10 9 13 13 C 1.38606 * 120.50498 * 0.54470 * 12 11 10 14 14 S 1.76198 * 119.87807 * 179.72561 * 13 12 11 15 15 O 1.42099 * 106.40594 * 156.18838 * 14 13 12 16 16 O 1.42100 * 106.40218 * 23.27128 * 14 13 12 17 17 N 1.65601 * 107.21726 * 269.73151 * 14 13 12 18 18 C 1.46927 * 120.62932 * 81.53360 * 17 14 13 19 19 C 1.53190 * 108.77096 * 233.58266 * 18 17 14 20 20 C 1.53043 * 109.31650 * 305.36344 * 19 18 17 21 21 C 1.53042 * 109.53547 * 61.36671 * 20 19 18 22 22 C 1.46926 * 120.62932 * 261.50665 * 17 14 13 23 23 H 1.09006 * 109.58688 * 246.34854 * 22 17 14 24 24 C 1.50704 * 109.58821 * 6.62507 * 22 17 14 25 25 O 1.20825 * 119.99277 * 77.39113 * 24 22 17 26 26 O 1.34227 * 120.00098 * 257.67238 * 24 22 17 27 27 C 1.37642 * 120.24769 * 359.45415 * 13 12 11 28 28 H 0.96998 * 119.99999 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.12793 * 0.03612 * 10 9 7 30 30 H 1.08000 * 119.87146 * 180.02562 * 11 10 9 31 31 H 1.08006 * 119.74660 * 180.29884 * 12 11 10 32 32 H 1.08990 * 109.58873 * 353.36932 * 18 17 14 33 33 H 1.08999 * 109.58942 * 113.65358 * 18 17 14 34 34 H 1.08997 * 109.50110 * 65.31807 * 19 18 17 35 35 H 1.09004 * 109.50116 * 185.38055 * 19 18 17 36 36 H 1.09003 * 109.46385 * 181.38428 * 20 19 18 37 37 H 1.08997 * 109.46103 * 301.34730 * 20 19 18 38 38 H 1.09000 * 109.50112 * 178.68759 * 21 20 19 39 39 H 1.08999 * 109.49766 * 58.58573 * 21 20 19 40 40 H 0.96697 * 116.99508 * 179.72821 * 26 24 22 41 41 H 1.07995 * 120.12826 * 180.28753 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0959 1.6964 -1.2125 5 1 1.2773 2.7465 0.0006 6 1 3.0960 1.6963 1.2124 7 6 2.0080 -1.2120 -0.0005 8 1 3.0494 -1.2343 0.2845 9 6 1.3515 -2.4072 -0.3741 10 6 0.2138 -2.3623 -1.2013 11 6 -0.4174 -3.5317 -1.5582 12 6 0.0668 -4.7515 -1.1106 13 6 1.1831 -4.8073 -0.2909 14 16 1.7800 -6.3658 0.2742 15 8 3.1555 -6.1818 0.5801 16 8 1.3133 -7.3349 -0.6544 17 7 1.0210 -6.6901 1.7098 18 6 -0.3362 -7.2526 1.7286 19 6 -1.2261 -6.3639 2.6032 20 6 -0.5886 -6.2142 3.9865 21 6 0.7795 -5.5420 3.8494 22 6 1.6921 -6.4214 2.9889 23 1 1.8879 -7.3621 3.5036 24 6 2.9930 -5.7039 2.7359 25 8 2.9913 -4.5243 2.4744 26 8 4.1531 -6.3765 2.7955 27 6 1.8305 -3.6502 0.0786 28 1 -0.4850 0.8400 0.0004 29 1 -0.1623 -1.4136 -1.5549 30 1 -1.2904 -3.4996 -2.1933 31 1 -0.4321 -5.6647 -1.3995 32 1 -0.7337 -7.2820 0.7142 33 1 -0.3079 -8.2619 2.1393 34 1 -1.3264 -5.3820 2.1407 35 1 -2.2106 -6.8210 2.7035 36 1 -1.2320 -5.6023 4.6187 37 1 -0.4659 -7.1985 4.4382 38 1 1.2229 -5.4146 4.8370 39 1 0.6603 -4.5679 3.3751 40 1 4.9610 -5.8744 2.6219 41 1 2.7029 -3.6963 0.7135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619470941.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:19 Heat of formation + Delta-G solvation = -161.361297 kcal Electronic energy + Delta-G solvation = -29240.882862 eV Core-core repulsion = 25211.602951 eV Total energy + Delta-G solvation = -4029.279911 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55154 -39.43905 -39.15278 -38.33293 -37.09332 -36.86612 -35.67849 -33.57214 -32.50906 -31.90602 -31.57313 -27.35904 -26.58416 -24.99521 -23.70112 -22.88911 -22.54734 -21.53306 -20.21046 -19.62023 -19.10426 -18.56443 -17.81948 -17.52099 -17.10069 -16.92866 -16.57290 -16.27022 -15.70794 -15.53997 -15.26099 -15.10678 -15.00812 -14.58282 -14.38671 -14.09271 -13.72797 -13.71112 -13.40749 -13.15761 -13.12869 -13.10594 -13.05777 -12.83742 -12.64516 -12.44141 -12.28363 -12.21109 -12.08122 -11.76591 -11.56871 -11.42894 -11.31879 -11.25983 -11.15166 -10.16027 -9.81873 -9.55109 -8.73741 -6.44240 -0.71544 0.39234 0.85438 1.15802 1.32786 1.42729 1.46146 1.88110 2.12402 2.15624 2.50453 2.64990 3.18154 3.49706 3.59771 3.83554 4.06046 4.10046 4.24759 4.27088 4.31553 4.42634 4.47315 4.65576 4.71137 4.88394 4.89136 4.90699 4.95328 5.06704 5.17775 5.18650 5.22106 5.26780 5.40677 5.48663 5.52885 5.58912 5.84051 5.87096 5.98071 6.11920 6.52867 6.79059 6.85772 7.10186 8.24072 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013167 B = 0.004865 C = 0.004611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.091422 B = 5754.300664 C = 6071.552092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.038 3.962 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.069 0.931 9 C 0.058 3.942 10 C -0.144 4.144 11 C -0.123 4.123 12 C -0.152 4.152 13 C -0.646 4.646 14 S 2.701 3.299 15 O -0.972 6.972 16 O -0.975 6.975 17 N -0.984 5.984 18 C 0.115 3.885 19 C -0.140 4.140 20 C -0.105 4.105 21 C -0.127 4.127 22 C 0.167 3.833 23 H 0.149 0.851 24 C 0.465 3.535 25 O -0.532 6.532 26 O -0.498 6.498 27 C -0.127 4.127 28 H 0.292 0.708 29 H 0.114 0.886 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.086 0.914 33 H 0.116 0.884 34 H 0.041 0.959 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.046 0.954 40 H 0.421 0.579 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.531 -12.323 9.287 15.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.177 4.177 3 Si 0.802 3.198 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.187 1.187 7 C -0.525 4.525 8 H 0.088 0.912 9 C 0.054 3.946 10 C -0.164 4.164 11 C -0.142 4.142 12 C -0.172 4.172 13 C -0.735 4.735 14 S 2.796 3.204 15 O -0.962 6.962 16 O -0.965 6.965 17 N -0.826 5.826 18 C -0.007 4.007 19 C -0.179 4.179 20 C -0.142 4.142 21 C -0.166 4.166 22 C 0.060 3.940 23 H 0.166 0.834 24 C 0.308 3.692 25 O -0.423 6.423 26 O -0.310 6.310 27 C -0.147 4.147 28 H 0.102 0.898 29 H 0.132 0.868 30 H 0.145 0.855 31 H 0.148 0.852 32 H 0.104 0.896 33 H 0.134 0.866 34 H 0.060 0.940 35 H 0.126 0.874 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.065 0.935 40 H 0.282 0.718 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.476 -12.652 8.893 15.662 hybrid contribution 0.645 2.293 -0.470 2.428 sum -1.831 -10.359 8.423 13.476 Atomic orbital electron populations 1.69809 1.08781 1.30913 1.35174 1.26718 0.95601 1.04333 0.91095 0.85264 0.78926 0.75609 0.80017 1.18488 1.18411 1.18688 1.19749 0.98201 0.92515 1.42004 0.91246 1.18077 0.92841 0.93002 0.90639 1.21640 0.98351 0.97751 0.98695 1.21104 0.99898 0.92554 1.00666 1.20417 0.96891 0.97985 1.01946 1.30209 1.09658 1.19210 1.14443 1.01397 0.72858 0.73438 0.72702 1.93383 1.33080 1.87348 1.82421 1.93495 1.82173 1.59109 1.61725 1.57637 1.28512 1.78258 1.18174 1.21871 0.77871 0.98649 1.02347 1.21991 1.00004 0.99784 0.96112 1.21458 0.93620 1.02446 0.96717 1.21952 0.96883 0.98161 0.99614 1.20842 0.85745 1.01686 0.85677 0.83408 1.23389 0.87309 0.86072 0.72452 1.90751 1.88056 1.18957 1.44495 1.84297 1.17444 1.46686 1.82575 1.21229 1.01119 0.91818 1.00557 0.89751 0.86843 0.85452 0.85157 0.89604 0.86592 0.94020 0.87355 0.90198 0.88152 0.88258 0.93470 0.71815 0.86062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.94 10.92 21.83 0.24 -42.70 16 2 C 0.04 1.95 5.15 85.26 0.44 2.39 16 3 Si 0.98 39.25 29.59 68.60 2.03 41.28 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 6 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 7 C -0.50 -28.19 9.06 23.46 0.21 -27.98 16 8 H 0.07 3.93 7.91 -2.91 -0.02 3.91 16 9 C 0.06 3.28 5.58 -21.29 -0.12 3.16 16 10 C -0.14 -7.72 8.70 22.73 0.20 -7.53 16 11 C -0.12 -5.72 10.02 22.22 0.22 -5.50 16 12 C -0.15 -6.74 9.53 22.46 0.21 -6.53 16 13 C -0.65 -30.02 5.97 22.22 0.13 -29.89 16 14 S 2.70 103.99 5.28 -56.49 -0.30 103.69 16 15 O -0.97 -40.38 12.03 -115.67 -1.39 -41.77 16 16 O -0.97 -38.81 16.28 -128.00 -2.08 -40.89 16 17 N -0.98 -28.33 3.29 -494.65 -1.63 -29.96 16 18 C 0.12 2.46 6.35 86.36 0.55 3.01 16 19 C -0.14 -2.74 6.08 30.67 0.19 -2.55 16 20 C -0.11 -1.74 5.88 30.62 0.18 -1.56 16 21 C -0.13 -2.99 5.20 30.67 0.16 -2.83 16 22 C 0.17 4.26 3.39 44.23 0.15 4.41 16 23 H 0.15 2.50 8.14 -2.38 -0.02 2.48 16 24 C 0.47 15.35 4.29 71.24 0.31 15.65 16 25 O -0.53 -22.42 13.03 28.85 0.38 -22.05 16 26 O -0.50 -14.02 12.32 -44.16 -0.54 -14.56 16 27 C -0.13 -6.75 8.70 22.73 0.20 -6.55 16 28 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 29 H 0.11 6.19 6.12 -2.91 -0.02 6.17 16 30 H 0.13 4.99 8.06 -2.91 -0.02 4.97 16 31 H 0.13 4.98 7.59 -2.91 -0.02 4.96 16 32 H 0.09 1.96 7.37 -2.39 -0.02 1.94 16 33 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 1.55 7.72 -2.39 -0.02 1.53 16 40 H 0.42 9.72 9.10 -74.06 -0.67 9.05 16 41 H 0.12 6.63 4.75 -2.91 -0.01 6.61 16 Total: -1.00 -74.75 341.89 0.13 -74.62 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.41 Total: 34.64 kcal Atomic # 6 Polarization: -65.32 SS G_CDS: 3.03 Total: -62.29 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.39 Total: -72.66 kcal Atomic # 8 Polarization: -115.64 SS G_CDS: -3.64 Total: -119.28 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.28 kcal Atomic # 16 Polarization: 103.99 SS G_CDS: -0.30 Total: 103.69 kcal Total: -74.75 0.13 -74.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619470941.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.742 kcal (2) G-P(sol) polarization free energy of solvation -74.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds