Wall clock time and date at job start Tue Mar 31 2020 22:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48499 * 109.46674 * 274.97070 * 3 2 1 5 5 H 1.48500 * 109.47128 * 34.97158 * 3 2 1 6 6 H 1.48499 * 109.47116 * 154.97125 * 3 2 1 7 7 C 1.39945 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99659 * 167.89144 * 7 2 1 9 9 C 1.41397 * 120.00167 * 347.89260 * 7 2 1 10 10 C 1.40731 * 120.24373 * 331.47496 * 9 7 2 11 11 C 1.37602 * 119.74552 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24689 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.49977 * 0.27349 * 12 11 10 14 14 S 1.76203 * 119.87375 * 179.72249 * 13 12 11 15 15 O 1.42096 * 106.40183 * 210.57857 * 14 13 12 16 16 O 1.42103 * 106.40199 * 343.50207 * 14 13 12 17 17 N 1.65601 * 107.21711 * 97.03902 * 14 13 12 18 18 C 1.47422 * 125.64743 * 83.06122 * 17 14 13 19 19 C 1.54909 * 104.83120 * 155.83794 * 18 17 14 20 20 C 1.55157 * 101.58637 * 37.00522 * 19 18 17 21 21 C 1.47026 * 125.64803 * 262.75553 * 17 14 13 22 22 H 1.08999 * 109.87908 * 300.51073 * 21 17 14 23 23 C 1.52996 * 109.88339 * 61.67429 * 21 17 14 24 24 C 1.50700 * 109.46919 * 185.96021 * 23 21 17 25 25 O 1.20826 * 120.00106 * 3.30131 * 24 23 21 26 26 O 1.34231 * 119.99843 * 183.30588 * 24 23 21 27 27 C 1.37637 * 120.24923 * 359.44622 * 13 12 11 28 28 H 0.96996 * 119.99500 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.12876 * 0.04800 * 10 9 7 30 30 H 1.07994 * 119.87639 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.74829 * 179.97438 * 12 11 10 32 32 H 1.09003 * 110.36427 * 274.67236 * 18 17 14 33 33 H 1.08994 * 110.36751 * 36.88829 * 18 17 14 34 34 H 1.09004 * 111.00850 * 155.08424 * 19 18 17 35 35 H 1.08999 * 111.00228 * 278.93412 * 19 18 17 36 36 H 1.08998 * 110.71768 * 82.86076 * 20 19 18 37 37 H 1.08994 * 110.72355 * 205.96245 * 20 19 18 38 38 H 1.09001 * 109.47586 * 305.95998 * 23 21 17 39 39 H 1.08996 * 109.46827 * 65.95959 * 23 21 17 40 40 H 0.96700 * 117.00208 * 185.04123 * 26 24 23 41 41 H 1.07996 * 120.12763 * 180.30115 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3847 2.1069 -1.3948 5 1 1.4963 2.6200 0.8025 6 1 3.5885 1.4120 0.5923 7 6 2.0080 -1.2120 0.0005 8 1 3.0699 -1.2225 -0.1957 9 6 1.3245 -2.4228 0.2579 10 6 0.1726 -2.4285 1.0664 11 6 -0.4842 -3.6128 1.3106 12 6 -0.0147 -4.7974 0.7639 13 6 1.1224 -4.8045 -0.0288 14 16 1.7086 -6.3205 -0.7091 15 8 3.1200 -6.1937 -0.8146 16 8 1.0741 -7.3605 0.0224 17 7 1.1308 -6.4185 -2.2579 18 6 1.7384 -5.7866 -3.4432 19 6 1.2496 -6.6386 -4.6411 20 6 -0.1997 -6.9833 -4.2076 21 6 -0.0695 -7.1555 -2.6797 22 1 0.0377 -8.2114 -2.4316 23 6 -1.3051 -6.5779 -1.9864 24 6 -2.5061 -7.4288 -2.3096 25 8 -2.3760 -8.4309 -2.9720 26 8 -3.7205 -7.0734 -1.8616 27 6 1.7920 -3.6309 -0.2911 28 1 -0.4849 0.8401 0.0004 29 1 -0.1947 -1.5069 1.4932 30 1 -1.3681 -3.6197 1.9310 31 1 -0.5362 -5.7223 0.9612 32 1 1.3929 -4.7577 -3.5435 33 1 2.8257 -5.8159 -3.3733 34 1 1.2538 -6.0560 -5.5624 35 1 1.8503 -7.5417 -4.7491 36 1 -0.8794 -6.1667 -4.4507 37 1 -0.5313 -7.9110 -4.6738 38 1 -1.1458 -6.5687 -0.9082 39 1 -1.4758 -5.5601 -2.3371 40 1 -4.4478 -7.6881 -2.0299 41 1 2.6750 -3.6380 -0.9129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619471465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:26 Heat of formation + Delta-G solvation = -149.886011 kcal Electronic energy + Delta-G solvation = -28095.197549 eV Core-core repulsion = 24066.415244 eV Total energy + Delta-G solvation = -4028.782305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45850 -38.50656 -37.70434 -36.79052 -36.14015 -35.38098 -33.86401 -31.87896 -30.88229 -30.11483 -29.85270 -26.84719 -25.53033 -22.68641 -21.94804 -21.64110 -21.03914 -20.68071 -18.67983 -18.30605 -17.83924 -17.07598 -16.83582 -16.06790 -15.88300 -15.58563 -15.20840 -15.04083 -14.68721 -13.89774 -13.69262 -13.51419 -13.42320 -13.29200 -13.14330 -12.74759 -12.57258 -12.11316 -11.98392 -11.69233 -11.66542 -11.56891 -11.46859 -11.39563 -11.38067 -11.13088 -11.03318 -11.00789 -10.86295 -10.75942 -10.64495 -10.59475 -9.81308 -9.67556 -9.42575 -8.87485 -8.08779 -7.71378 -6.92299 -4.59637 0.85200 2.12185 2.15443 2.58238 2.89782 2.98449 3.00223 3.05030 3.52418 3.81070 4.16874 4.37913 4.42097 4.52964 4.63459 4.96978 5.05491 5.20331 5.27378 5.33877 5.38082 5.60829 5.65089 5.78885 5.82917 5.90747 5.98461 6.01697 6.10804 6.14998 6.30704 6.41218 6.48352 6.58663 6.71432 6.84398 7.01377 7.16275 7.30786 7.66361 7.77147 7.83190 7.89315 8.35980 8.63395 8.67419 10.03060 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.003948 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.686176 B = 7090.641846 C = 7527.797083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.801 5.801 2 C 0.074 3.926 3 Si 0.913 3.087 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.093 3.907 10 C -0.110 4.110 11 C -0.121 4.121 12 C -0.145 4.145 13 C -0.635 4.635 14 S 2.697 3.303 15 O -0.965 6.965 16 O -0.970 6.970 17 N -1.008 6.008 18 C 0.113 3.887 19 C -0.128 4.128 20 C -0.122 4.122 21 C 0.169 3.831 22 H 0.091 0.909 23 C -0.145 4.145 24 C 0.492 3.508 25 O -0.517 6.517 26 O -0.514 6.514 27 C -0.120 4.120 28 H 0.283 0.717 29 H 0.126 0.874 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.087 0.913 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.408 0.592 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.227 -7.845 -7.313 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.143 4.143 3 Si 0.737 3.263 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.183 1.183 7 C -0.491 4.491 8 H 0.100 0.900 9 C 0.089 3.911 10 C -0.130 4.130 11 C -0.140 4.140 12 C -0.166 4.166 13 C -0.727 4.727 14 S 2.796 3.204 15 O -0.955 6.955 16 O -0.961 6.961 17 N -0.845 5.845 18 C -0.012 4.012 19 C -0.167 4.167 20 C -0.161 4.161 21 C 0.062 3.938 22 H 0.109 0.891 23 C -0.184 4.184 24 C 0.334 3.666 25 O -0.405 6.405 26 O -0.325 6.325 27 C -0.141 4.141 28 H 0.094 0.906 29 H 0.144 0.856 30 H 0.117 0.883 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.136 0.864 40 H 0.267 0.733 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -3.470 -8.317 -6.963 11.389 hybrid contribution -0.715 1.243 0.027 1.434 sum -4.185 -7.074 -6.936 10.755 Atomic orbital electron populations 1.69746 1.07522 1.29485 1.35971 1.25908 0.94863 1.01444 0.92123 0.86212 0.80639 0.80283 0.79167 1.19445 1.19988 1.18329 1.19611 0.96502 0.90332 1.42667 0.89984 1.17686 0.91992 0.92041 0.89362 1.21680 0.97198 0.96799 0.97294 1.20831 0.99351 0.93234 1.00628 1.20097 0.96448 0.97535 1.02536 1.29806 1.09295 1.17607 1.16034 1.01486 0.73296 0.74628 0.71026 1.93528 1.28782 1.87658 1.85570 1.93505 1.77408 1.55450 1.69697 1.58801 1.37281 1.64697 1.23673 1.22089 0.98632 0.96838 0.83601 1.22770 0.95983 1.00319 0.97626 1.22714 0.97338 1.02913 0.93117 1.20997 0.82041 0.95899 0.94838 0.89125 1.22071 0.90216 1.00875 1.05255 1.23178 0.84015 0.84022 0.75336 1.90695 1.85995 1.26837 1.37011 1.84580 1.19178 1.53293 1.75497 1.20781 0.99969 0.91833 1.01559 0.90648 0.85633 0.88251 0.87516 0.90865 0.89716 0.89903 0.90574 0.90689 0.89466 0.86595 0.86354 0.73317 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.32 10.90 55.55 0.61 -18.72 16 2 C 0.07 1.74 5.23 -17.34 -0.09 1.64 16 3 Si 0.91 17.70 29.58 -169.99 -5.03 12.67 16 4 H -0.27 -5.16 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 7 C -0.46 -11.50 9.06 -37.74 -0.34 -11.84 16 8 H 0.08 1.97 7.87 -52.49 -0.41 1.56 16 9 C 0.09 2.31 5.55 -106.82 -0.59 1.72 16 10 C -0.11 -2.65 8.66 -38.87 -0.34 -2.98 16 11 C -0.12 -2.61 10.02 -39.66 -0.40 -3.01 16 12 C -0.14 -3.02 8.90 -39.29 -0.35 -3.37 16 13 C -0.64 -13.42 5.96 -39.66 -0.24 -13.65 16 14 S 2.70 50.90 5.44 -107.50 -0.59 50.31 16 15 O -0.96 -20.31 16.91 -57.17 -0.97 -21.28 16 16 O -0.97 -19.41 15.90 -57.17 -0.91 -20.32 16 17 N -1.01 -15.29 3.40 -104.43 -0.35 -15.65 16 18 C 0.11 1.45 7.15 -2.53 -0.02 1.44 16 19 C -0.13 -1.28 7.08 -24.58 -0.17 -1.45 16 20 C -0.12 -1.32 5.56 -24.90 -0.14 -1.46 16 21 C 0.17 2.28 2.44 -66.96 -0.16 2.11 16 22 H 0.09 1.27 7.85 -51.93 -0.41 0.86 16 23 C -0.15 -1.95 5.34 -27.88 -0.15 -2.10 16 24 C 0.49 6.19 8.08 36.01 0.29 6.48 16 25 O -0.52 -7.27 15.74 -18.75 -0.30 -7.56 16 26 O -0.51 -5.36 13.42 -39.26 -0.53 -5.89 16 27 C -0.12 -2.77 9.26 -38.87 -0.36 -3.13 16 28 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 29 H 0.13 3.09 6.25 -52.48 -0.33 2.77 16 30 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.11 2.01 6.70 -52.49 -0.35 1.66 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.08 7.82 -51.93 -0.41 0.67 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.07 0.76 7.76 -51.93 -0.40 0.36 16 37 H 0.09 0.91 7.80 -51.93 -0.41 0.50 16 38 H 0.12 1.71 5.64 -51.93 -0.29 1.41 16 39 H 0.12 1.50 8.00 -51.93 -0.42 1.08 16 40 H 0.41 2.30 9.11 45.56 0.41 2.72 16 41 H 0.11 2.40 7.78 -52.49 -0.41 1.99 16 LS Contribution 354.28 15.07 5.34 5.34 Total: -1.00 -30.95 354.28 -10.02 -40.97 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.24 Total: 9.72 kcal Atomic # 6 Polarization: -26.54 SS G_CDS: -3.06 Total: -29.59 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.25 Total: -34.37 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -2.70 Total: -55.05 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 50.90 SS G_CDS: -0.59 Total: 50.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.95 -10.02 -40.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.916 kcal (2) G-P(sol) polarization free energy of solvation -30.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds