Wall clock time and date at job start Tue Mar 31 2020 22:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 120.00177 * 2 1 4 4 H 1.48499 * 109.46674 * 274.97070 * 3 2 1 5 5 H 1.48500 * 109.47128 * 34.97158 * 3 2 1 6 6 H 1.48499 * 109.47116 * 154.97125 * 3 2 1 7 7 C 1.39945 * 119.99712 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99659 * 167.89144 * 7 2 1 9 9 C 1.41397 * 120.00167 * 347.89260 * 7 2 1 10 10 C 1.40731 * 120.24373 * 331.47496 * 9 7 2 11 11 C 1.37602 * 119.74552 * 180.02562 * 10 9 7 12 12 C 1.38658 * 120.24689 * 0.02562 * 11 10 9 13 13 C 1.38615 * 120.49977 * 0.27349 * 12 11 10 14 14 S 1.76203 * 119.87375 * 179.72249 * 13 12 11 15 15 O 1.42096 * 106.40183 * 210.57857 * 14 13 12 16 16 O 1.42103 * 106.40199 * 343.50207 * 14 13 12 17 17 N 1.65601 * 107.21711 * 97.03902 * 14 13 12 18 18 C 1.47422 * 125.64743 * 83.06122 * 17 14 13 19 19 C 1.54909 * 104.83120 * 155.83794 * 18 17 14 20 20 C 1.55157 * 101.58637 * 37.00522 * 19 18 17 21 21 C 1.47026 * 125.64803 * 262.75553 * 17 14 13 22 22 H 1.08999 * 109.87908 * 300.51073 * 21 17 14 23 23 C 1.52996 * 109.88339 * 61.67429 * 21 17 14 24 24 C 1.50700 * 109.46919 * 185.96021 * 23 21 17 25 25 O 1.20826 * 120.00106 * 3.30131 * 24 23 21 26 26 O 1.34231 * 119.99843 * 183.30588 * 24 23 21 27 27 C 1.37637 * 120.24923 * 359.44622 * 13 12 11 28 28 H 0.96996 * 119.99500 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.12876 * 0.04800 * 10 9 7 30 30 H 1.07994 * 119.87639 * 179.97438 * 11 10 9 31 31 H 1.07998 * 119.74829 * 179.97438 * 12 11 10 32 32 H 1.09003 * 110.36427 * 274.67236 * 18 17 14 33 33 H 1.08994 * 110.36751 * 36.88829 * 18 17 14 34 34 H 1.09004 * 111.00850 * 155.08424 * 19 18 17 35 35 H 1.08999 * 111.00228 * 278.93412 * 19 18 17 36 36 H 1.08998 * 110.71768 * 82.86076 * 20 19 18 37 37 H 1.08994 * 110.72355 * 205.96245 * 20 19 18 38 38 H 1.09001 * 109.47586 * 305.95998 * 23 21 17 39 39 H 1.08996 * 109.46827 * 65.95959 * 23 21 17 40 40 H 0.96700 * 117.00208 * 185.04123 * 26 24 23 41 41 H 1.07996 * 120.12763 * 180.30115 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3847 2.1069 -1.3948 5 1 1.4963 2.6200 0.8025 6 1 3.5885 1.4120 0.5923 7 6 2.0080 -1.2120 0.0005 8 1 3.0699 -1.2225 -0.1957 9 6 1.3245 -2.4228 0.2579 10 6 0.1726 -2.4285 1.0664 11 6 -0.4842 -3.6128 1.3106 12 6 -0.0147 -4.7974 0.7639 13 6 1.1224 -4.8045 -0.0288 14 16 1.7086 -6.3205 -0.7091 15 8 3.1200 -6.1937 -0.8146 16 8 1.0741 -7.3605 0.0224 17 7 1.1308 -6.4185 -2.2579 18 6 1.7384 -5.7866 -3.4432 19 6 1.2496 -6.6386 -4.6411 20 6 -0.1997 -6.9833 -4.2076 21 6 -0.0695 -7.1555 -2.6797 22 1 0.0377 -8.2114 -2.4316 23 6 -1.3051 -6.5779 -1.9864 24 6 -2.5061 -7.4288 -2.3096 25 8 -2.3760 -8.4309 -2.9720 26 8 -3.7205 -7.0734 -1.8616 27 6 1.7920 -3.6309 -0.2911 28 1 -0.4849 0.8401 0.0004 29 1 -0.1947 -1.5069 1.4932 30 1 -1.3681 -3.6197 1.9310 31 1 -0.5362 -5.7223 0.9612 32 1 1.3929 -4.7577 -3.5435 33 1 2.8257 -5.8159 -3.3733 34 1 1.2538 -6.0560 -5.5624 35 1 1.8503 -7.5417 -4.7491 36 1 -0.8794 -6.1667 -4.4507 37 1 -0.5313 -7.9110 -4.6738 38 1 -1.1458 -6.5687 -0.9082 39 1 -1.4758 -5.5601 -2.3371 40 1 -4.4478 -7.6881 -2.0299 41 1 2.6750 -3.6380 -0.9129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619471465.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:25 Heat of formation + Delta-G solvation = -170.345794 kcal Electronic energy + Delta-G solvation = -28096.084752 eV Core-core repulsion = 24066.415244 eV Total energy + Delta-G solvation = -4029.669508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.43427 -39.53726 -39.44963 -38.38010 -37.06746 -36.98729 -35.63797 -32.90883 -31.96215 -31.88839 -31.58492 -27.84488 -27.33462 -23.86767 -23.50857 -22.88068 -22.50832 -21.75663 -20.15455 -19.65775 -19.00737 -18.44869 -17.95934 -17.66732 -17.02979 -16.91073 -16.68450 -16.57137 -16.13147 -15.30055 -15.10534 -14.96531 -14.70680 -14.38141 -14.30651 -14.12396 -13.72122 -13.70130 -13.33011 -13.26171 -13.13999 -13.11308 -13.00350 -12.81561 -12.69910 -12.62299 -12.49142 -12.21994 -12.03756 -11.87974 -11.63128 -11.58872 -11.54508 -11.37318 -11.15852 -10.12649 -9.82877 -9.51478 -8.68214 -6.46099 -0.65067 0.38210 0.83962 1.17642 1.39245 1.45061 1.52845 1.83424 2.19197 2.27420 2.57852 2.72367 3.18034 3.47644 3.54705 3.55377 3.87547 4.13010 4.22876 4.27436 4.30780 4.41941 4.44305 4.62624 4.68141 4.82869 4.85632 4.88819 4.95795 5.00634 5.04443 5.07161 5.20198 5.21197 5.36982 5.40677 5.46118 5.54794 5.61599 5.87998 5.95308 6.10080 6.53219 6.81680 6.85056 7.00733 8.29260 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.013046 B = 0.003948 C = 0.003719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.686176 B = 7090.641846 C = 7527.797083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.038 3.962 3 Si 0.981 3.019 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.262 1.262 7 C -0.498 4.498 8 H 0.078 0.922 9 C 0.065 3.935 10 C -0.131 4.131 11 C -0.122 4.122 12 C -0.141 4.141 13 C -0.640 4.640 14 S 2.721 3.279 15 O -0.988 6.988 16 O -0.981 6.981 17 N -1.004 6.004 18 C 0.100 3.900 19 C -0.116 4.116 20 C -0.115 4.115 21 C 0.161 3.839 22 H 0.085 0.915 23 C -0.150 4.150 24 C 0.501 3.499 25 O -0.533 6.533 26 O -0.513 6.513 27 C -0.136 4.136 28 H 0.290 0.710 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.130 0.870 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.124 0.876 40 H 0.430 0.570 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.020 -8.234 -8.561 12.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.176 4.176 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.527 4.527 8 H 0.096 0.904 9 C 0.062 3.938 10 C -0.151 4.151 11 C -0.141 4.141 12 C -0.162 4.162 13 C -0.730 4.730 14 S 2.817 3.183 15 O -0.979 6.979 16 O -0.971 6.971 17 N -0.843 5.843 18 C -0.024 4.024 19 C -0.155 4.155 20 C -0.154 4.154 21 C 0.055 3.945 22 H 0.103 0.897 23 C -0.189 4.189 24 C 0.344 3.656 25 O -0.423 6.423 26 O -0.327 6.327 27 C -0.157 4.157 28 H 0.101 0.899 29 H 0.131 0.869 30 H 0.145 0.855 31 H 0.147 0.853 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.128 0.872 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.292 0.708 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.298 -8.699 -8.187 12.696 hybrid contribution -0.568 1.224 0.398 1.407 sum -4.866 -7.475 -7.790 11.842 Atomic orbital electron populations 1.69786 1.08695 1.30733 1.36194 1.26665 0.95599 1.04220 0.91165 0.85189 0.79070 0.76066 0.79449 1.18635 1.19021 1.18540 1.19832 0.96605 0.91543 1.44733 0.90423 1.18018 0.92808 0.92912 0.90092 1.21670 0.97829 0.97331 0.98269 1.21138 0.99885 0.92623 1.00442 1.20429 0.96176 0.98180 1.01422 1.30225 1.08844 1.18254 1.15635 1.00688 0.72554 0.73436 0.71627 1.93495 1.30399 1.87678 1.86312 1.93481 1.77483 1.55215 1.70958 1.58525 1.38238 1.64756 1.22757 1.22382 0.98639 0.97496 0.83849 1.22785 0.95144 1.00462 0.97118 1.22718 0.98138 1.03762 0.90821 1.21218 0.81180 0.95242 0.96846 0.89680 1.22059 0.90962 1.01552 1.04366 1.22863 0.84357 0.83395 0.75012 1.90692 1.86369 1.27368 1.37866 1.84525 1.19207 1.53980 1.74964 1.20848 1.00498 0.92193 1.02160 0.89896 0.86868 0.85490 0.85251 0.90830 0.89905 0.87243 0.89679 0.89749 0.88582 0.88014 0.85798 0.70791 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.53 10.90 21.83 0.24 -40.29 16 2 C 0.04 1.82 5.23 85.26 0.45 2.27 16 3 Si 0.98 36.41 29.58 68.60 2.03 38.44 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.38 7.11 99.48 0.71 -8.68 16 6 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 7 C -0.50 -25.63 9.06 23.46 0.21 -25.41 16 8 H 0.08 3.89 7.87 -2.91 -0.02 3.87 16 9 C 0.06 3.34 5.55 -21.29 -0.12 3.22 16 10 C -0.13 -6.46 8.66 22.73 0.20 -6.27 16 11 C -0.12 -5.22 10.02 22.22 0.22 -5.00 16 12 C -0.14 -5.80 8.90 22.46 0.20 -5.60 16 13 C -0.64 -27.12 5.96 22.22 0.13 -26.99 16 14 S 2.72 101.83 5.44 -56.49 -0.31 101.52 16 15 O -0.99 -41.73 16.91 -128.00 -2.16 -43.90 16 16 O -0.98 -38.53 15.90 -128.00 -2.04 -40.57 16 17 N -1.00 -29.49 3.40 -484.30 -1.65 -31.13 16 18 C 0.10 2.45 7.15 86.86 0.62 3.07 16 19 C -0.12 -1.99 7.08 31.99 0.23 -1.77 16 20 C -0.12 -2.21 5.56 31.78 0.18 -2.03 16 21 C 0.16 4.10 2.44 45.34 0.11 4.21 16 22 H 0.09 2.27 7.85 -2.39 -0.02 2.25 16 23 C -0.15 -3.83 5.34 29.85 0.16 -3.67 16 24 C 0.50 11.65 8.08 71.24 0.58 12.22 16 25 O -0.53 -13.94 15.74 21.96 0.35 -13.59 16 26 O -0.51 -9.54 13.42 -51.42 -0.69 -10.23 16 27 C -0.14 -6.43 9.26 22.73 0.21 -6.22 16 28 H 0.29 12.82 8.30 -92.71 -0.77 12.05 16 29 H 0.11 5.77 6.25 -2.91 -0.02 5.75 16 30 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 31 H 0.13 4.68 6.70 -2.91 -0.02 4.66 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 33 H 0.08 2.05 7.82 -2.39 -0.02 2.03 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.47 7.76 -2.39 -0.02 1.45 16 37 H 0.10 1.72 7.80 -2.39 -0.02 1.71 16 38 H 0.10 2.88 5.64 -2.39 -0.01 2.87 16 39 H 0.12 2.97 8.00 -2.39 -0.02 2.95 16 40 H 0.43 3.75 9.11 -74.06 -0.67 3.08 16 41 H 0.11 5.01 7.78 -2.91 -0.02 4.99 16 Total: -1.00 -66.87 354.28 -0.45 -67.33 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.41 Total: 30.39 kcal Atomic # 6 Polarization: -61.34 SS G_CDS: 3.37 Total: -57.97 kcal Atomic # 7 Polarization: -70.02 SS G_CDS: -1.41 Total: -71.43 kcal Atomic # 8 Polarization: -103.74 SS G_CDS: -4.54 Total: -108.29 kcal Atomic # 14 Polarization: 36.41 SS G_CDS: 2.03 Total: 38.44 kcal Atomic # 16 Polarization: 101.83 SS G_CDS: -0.31 Total: 101.52 kcal Total: -66.87 -0.45 -67.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471465.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.020 kcal (2) G-P(sol) polarization free energy of solvation -66.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds