Wall clock time and date at job start Tue Mar 31 2020 22:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.87378 * 2 1 4 4 O 1.20826 * 120.00171 * 24.29524 * 3 2 1 5 5 O 1.34227 * 120.00002 * 204.02459 * 3 2 1 6 6 C 1.54326 * 109.88419 * 121.01454 * 2 1 3 7 7 C 1.55397 * 102.82697 * 97.47007 * 6 2 1 8 8 C 1.54911 * 101.66783 * 35.33845 * 7 6 2 9 9 N 1.47022 * 109.88374 * 238.98350 * 2 1 3 10 10 S 1.65600 * 125.64759 * 59.40506 * 9 2 1 11 11 O 1.42099 * 106.39968 * 203.54007 * 10 9 2 12 12 O 1.42095 * 106.40560 * 336.45683 * 10 9 2 13 13 C 1.76202 * 107.22019 * 90.00056 * 10 9 2 14 14 C 1.38658 * 119.87440 * 269.72866 * 13 10 9 15 15 C 1.38619 * 120.49554 * 179.72120 * 14 13 10 16 16 C 1.37629 * 120.25131 * 0.54897 * 15 14 13 17 17 C 1.40705 * 119.74582 * 359.73031 * 16 15 14 18 18 C 1.41391 * 120.24593 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00413 * 155.18265 * 18 17 16 20 20 C 1.39949 * 119.99715 * 335.17859 * 18 17 16 21 21 N 1.30826 * 120.00075 * 342.35356 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 162.35672 * 20 18 17 23 23 H 1.48497 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47097 * 120.00032 * 22 20 18 25 25 H 1.48502 * 109.47332 * 239.99814 * 22 20 18 26 26 C 1.37601 * 119.87578 * 89.99773 * 13 10 9 27 27 H 1.09002 * 109.47002 * 60.69909 * 1 2 3 28 28 H 1.08995 * 109.46989 * 180.70157 * 1 2 3 29 29 H 1.09000 * 109.47290 * 300.70445 * 1 2 3 30 30 H 0.96699 * 117.00029 * 180.27114 * 5 3 2 31 31 H 1.09000 * 110.71934 * 215.74298 * 6 2 1 32 32 H 1.09005 * 110.71449 * 339.01525 * 6 2 1 33 33 H 1.09004 * 110.89487 * 277.27021 * 7 6 2 34 34 H 1.08996 * 111.07082 * 153.48895 * 7 6 2 35 35 H 1.08998 * 110.36925 * 204.23336 * 8 7 6 36 36 H 1.09009 * 110.36439 * 81.91108 * 8 7 6 37 37 H 1.07989 * 119.74949 * 359.97408 * 14 13 10 38 38 H 1.08001 * 119.86864 * 180.27442 * 15 14 13 39 39 H 1.08000 * 120.13117 * 179.70290 * 16 15 14 40 40 H 0.97005 * 119.99722 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.12756 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 8 1.3508 2.3096 0.4305 5 8 3.2690 1.6875 -0.4733 6 6 2.0549 -0.7478 1.2438 7 6 2.3575 -2.1680 0.6903 8 6 2.8598 -1.8466 -0.7394 9 7 2.0300 -0.7124 -1.1849 10 16 1.7142 -0.3074 -2.7592 11 8 1.8910 -1.4933 -3.5218 12 8 0.5030 0.4355 -2.7472 13 6 2.9771 0.8082 -3.2743 14 6 2.8021 2.1737 -3.1086 15 6 3.7896 3.0626 -3.5039 16 6 4.9517 2.5981 -4.0764 17 6 5.1378 1.2149 -4.2547 18 6 6.3274 0.7261 -4.8423 19 1 6.6610 -0.2790 -4.6304 20 6 7.0726 1.5449 -5.6984 21 7 6.5236 2.6068 -6.2300 22 14 8.8511 1.1215 -6.0821 23 1 9.2309 -0.1200 -5.3614 24 1 9.0056 0.9115 -7.5441 25 1 9.7304 2.2361 -5.6465 26 6 4.1310 0.3214 -3.8444 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0275 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 3.5553 2.6108 -0.4489 31 1 2.9642 -0.2792 1.6202 32 1 1.2908 -0.7885 2.0201 33 1 1.4521 -2.7741 0.6592 34 1 3.1342 -2.6595 1.2760 35 1 2.7129 -2.7048 -1.3950 36 1 3.9117 -1.5612 -0.7167 37 1 1.8913 2.5472 -2.6646 38 1 3.6444 4.1239 -3.3661 39 1 5.7178 3.2927 -4.3881 40 1 7.0403 3.1744 -6.8231 41 1 4.2632 -0.7423 -3.9768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619471574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:20 Heat of formation + Delta-G solvation = -137.109424 kcal Electronic energy + Delta-G solvation = -29020.746923 eV Core-core repulsion = 24992.518652 eV Total energy + Delta-G solvation = -4028.228271 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.63230 -38.25790 -37.64010 -36.80374 -35.92771 -35.40184 -33.84233 -31.49465 -31.09875 -30.08736 -29.79937 -26.25486 -25.49470 -23.92971 -22.05525 -21.76540 -21.00532 -20.54352 -18.93560 -18.23234 -17.51778 -17.38546 -16.17774 -15.93343 -15.76244 -15.26784 -15.21921 -14.78981 -14.67711 -13.84036 -13.64319 -13.48034 -13.34856 -13.32268 -12.85381 -12.70556 -12.60375 -12.19267 -11.95342 -11.79344 -11.64064 -11.57165 -11.44972 -11.41591 -11.38076 -11.21820 -11.13075 -11.00476 -10.89379 -10.74385 -10.58894 -10.41176 -9.79433 -9.66762 -9.35702 -8.96162 -8.03143 -7.68821 -6.92700 -4.53456 0.81767 2.14991 2.26893 2.61853 2.99671 3.02372 3.05592 3.08594 3.35626 3.82431 4.17717 4.24276 4.31959 4.44953 4.64546 4.86261 4.97285 5.18971 5.34701 5.39982 5.46207 5.53487 5.64101 5.65272 5.75748 5.80564 5.99188 6.03256 6.10226 6.14280 6.35413 6.38622 6.63291 6.68784 6.75211 6.88760 7.03902 7.21123 7.37336 7.70906 7.79987 7.93495 8.05339 8.39725 8.66919 8.71633 10.03062 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.004160 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.931034 B = 6729.828258 C = 6969.835180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.197 3.803 3 C 0.464 3.536 4 O -0.510 6.510 5 O -0.488 6.488 6 C -0.115 4.115 7 C -0.124 4.124 8 C 0.114 3.886 9 N -0.997 5.997 10 S 2.692 3.308 11 O -0.962 6.962 12 O -0.966 6.966 13 C -0.618 4.618 14 C -0.135 4.135 15 C -0.123 4.123 16 C -0.114 4.114 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.075 3.925 21 N -0.795 5.795 22 Si 0.911 3.089 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.120 4.120 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.409 0.591 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.283 0.717 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.969 -5.495 13.153 14.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.106 3.894 3 C 0.304 3.696 4 O -0.398 6.398 5 O -0.298 6.298 6 C -0.153 4.153 7 C -0.163 4.163 8 C -0.011 4.011 9 N -0.833 5.833 10 S 2.792 3.208 11 O -0.953 6.953 12 O -0.957 6.957 13 C -0.711 4.711 14 C -0.157 4.157 15 C -0.143 4.143 16 C -0.134 4.134 17 C 0.090 3.910 18 C -0.490 4.490 19 H 0.100 0.900 20 C -0.143 4.143 21 N -0.420 5.420 22 Si 0.735 3.265 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.197 1.197 26 C -0.142 4.142 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.268 0.732 31 H 0.101 0.899 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.141 0.859 40 H 0.094 0.906 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.977 -5.796 12.499 14.649 hybrid contribution 1.696 1.177 -0.338 2.092 sum -3.281 -4.619 12.160 13.415 Atomic orbital electron populations 1.22470 0.90556 1.03760 1.06161 1.20524 0.95488 0.85244 0.88095 1.23923 0.79715 0.92132 0.73822 1.90690 1.57810 1.47667 1.43615 1.84707 1.32709 1.36695 1.75684 1.22758 1.02215 0.95623 0.94739 1.22818 1.02212 0.95842 0.95424 1.22116 0.95130 0.88222 0.95619 1.58887 1.64318 1.39236 1.20866 1.01642 0.74466 0.73949 0.70779 1.93530 1.87209 1.47400 1.67167 1.93483 1.43507 1.73315 1.85374 1.29569 1.15728 1.08790 1.17041 1.19935 0.98809 0.91103 1.05838 1.20757 0.95134 0.97316 1.01087 1.21604 0.96923 0.96413 0.98450 1.17646 0.91719 0.91601 0.90044 1.19621 1.05287 1.00523 1.23564 0.89967 1.25929 1.00317 0.94065 0.93995 1.69791 1.37157 1.12835 1.22205 0.86216 0.81602 0.79837 0.78864 1.18254 1.19875 1.19651 1.20693 0.92096 0.98594 1.02792 0.88276 0.90658 0.90228 0.73193 0.89856 0.88995 0.90198 0.89345 0.89362 0.90543 0.88434 0.88571 0.85873 0.90636 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 7.86 37.16 0.29 -1.93 16 2 C 0.20 2.63 0.86 -131.99 -0.11 2.51 16 3 C 0.46 7.10 6.58 36.01 0.24 7.34 16 4 O -0.51 -8.78 16.87 -18.75 -0.32 -9.10 16 5 O -0.49 -7.25 10.13 -39.25 -0.40 -7.64 16 6 C -0.11 -1.07 6.03 -24.76 -0.15 -1.22 16 7 C -0.12 -1.02 7.09 -24.45 -0.17 -1.19 16 8 C 0.11 1.34 7.11 -2.53 -0.02 1.32 16 9 N -1.00 -14.87 2.89 -98.87 -0.29 -15.16 16 10 S 2.69 51.92 5.61 -107.50 -0.60 51.31 16 11 O -0.96 -20.40 16.59 -57.18 -0.95 -21.35 16 12 O -0.97 -19.87 14.26 -57.18 -0.82 -20.69 16 13 C -0.62 -13.40 5.23 -39.66 -0.21 -13.61 16 14 C -0.14 -2.89 7.15 -39.29 -0.28 -3.17 16 15 C -0.12 -2.67 10.02 -39.66 -0.40 -3.07 16 16 C -0.11 -2.75 8.70 -38.87 -0.34 -3.09 16 17 C 0.09 2.35 5.57 -106.83 -0.60 1.76 16 18 C -0.46 -11.59 9.05 -37.74 -0.34 -11.93 16 19 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 20 C 0.07 1.79 5.14 -17.34 -0.09 1.70 16 21 N -0.79 -19.64 10.97 55.55 0.61 -19.03 16 22 Si 0.91 17.82 29.59 -169.99 -5.03 12.79 16 23 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 26 C -0.12 -2.84 9.26 -38.87 -0.36 -3.20 16 27 H 0.10 1.58 5.61 -51.93 -0.29 1.28 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.91 7.87 -51.93 -0.41 0.51 16 30 H 0.41 5.04 9.06 45.56 0.41 5.45 16 31 H 0.08 0.75 7.84 -51.93 -0.41 0.34 16 32 H 0.09 0.67 7.83 -51.93 -0.41 0.27 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.02 7.78 -51.93 -0.40 0.62 16 36 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 37 H 0.10 2.00 7.59 -52.49 -0.40 1.60 16 38 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 3.05 6.18 -52.49 -0.32 2.72 16 40 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 41 H 0.11 2.48 7.60 -52.48 -0.40 2.08 16 LS Contribution 348.07 15.07 5.25 5.25 Total: -1.00 -31.41 348.07 -9.37 -40.78 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -4.29 Total: 10.62 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: -2.54 Total: -27.77 kcal Atomic # 7 Polarization: -34.51 SS G_CDS: 0.32 Total: -34.19 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -2.48 Total: -58.78 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 51.92 SS G_CDS: -0.60 Total: 51.31 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.41 -9.37 -40.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.331 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds