Wall clock time and date at job start Tue Mar 31 2020 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.87378 * 2 1 4 4 O 1.20826 * 120.00171 * 24.29524 * 3 2 1 5 5 O 1.34227 * 120.00002 * 204.02459 * 3 2 1 6 6 C 1.54326 * 109.88419 * 121.01454 * 2 1 3 7 7 C 1.55397 * 102.82697 * 97.47007 * 6 2 1 8 8 C 1.54911 * 101.66783 * 35.33845 * 7 6 2 9 9 N 1.47022 * 109.88374 * 238.98350 * 2 1 3 10 10 S 1.65600 * 125.64759 * 59.40506 * 9 2 1 11 11 O 1.42099 * 106.39968 * 203.54007 * 10 9 2 12 12 O 1.42095 * 106.40560 * 336.45683 * 10 9 2 13 13 C 1.76202 * 107.22019 * 90.00056 * 10 9 2 14 14 C 1.38658 * 119.87440 * 269.72866 * 13 10 9 15 15 C 1.38619 * 120.49554 * 179.72120 * 14 13 10 16 16 C 1.37629 * 120.25131 * 0.54897 * 15 14 13 17 17 C 1.40705 * 119.74582 * 359.73031 * 16 15 14 18 18 C 1.41391 * 120.24593 * 179.97438 * 17 16 15 19 19 H 1.08002 * 120.00413 * 155.18265 * 18 17 16 20 20 C 1.39949 * 119.99715 * 335.17859 * 18 17 16 21 21 N 1.30826 * 120.00075 * 342.35356 * 20 18 17 22 22 Si 1.86803 * 119.99882 * 162.35672 * 20 18 17 23 23 H 1.48497 * 109.47128 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47097 * 120.00032 * 22 20 18 25 25 H 1.48502 * 109.47332 * 239.99814 * 22 20 18 26 26 C 1.37601 * 119.87578 * 89.99773 * 13 10 9 27 27 H 1.09002 * 109.47002 * 60.69909 * 1 2 3 28 28 H 1.08995 * 109.46989 * 180.70157 * 1 2 3 29 29 H 1.09000 * 109.47290 * 300.70445 * 1 2 3 30 30 H 0.96699 * 117.00029 * 180.27114 * 5 3 2 31 31 H 1.09000 * 110.71934 * 215.74298 * 6 2 1 32 32 H 1.09005 * 110.71449 * 339.01525 * 6 2 1 33 33 H 1.09004 * 110.89487 * 277.27021 * 7 6 2 34 34 H 1.08996 * 111.07082 * 153.48895 * 7 6 2 35 35 H 1.08998 * 110.36925 * 204.23336 * 8 7 6 36 36 H 1.09009 * 110.36439 * 81.91108 * 8 7 6 37 37 H 1.07989 * 119.74949 * 359.97408 * 14 13 10 38 38 H 1.08001 * 119.86864 * 180.27442 * 15 14 13 39 39 H 1.08000 * 120.13117 * 179.70290 * 16 15 14 40 40 H 0.97005 * 119.99722 * 179.97438 * 21 20 18 41 41 H 1.08003 * 120.12756 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0423 1.4173 0.0000 4 8 1.3508 2.3096 0.4305 5 8 3.2690 1.6875 -0.4733 6 6 2.0549 -0.7478 1.2438 7 6 2.3575 -2.1680 0.6903 8 6 2.8598 -1.8466 -0.7394 9 7 2.0300 -0.7124 -1.1849 10 16 1.7142 -0.3074 -2.7592 11 8 1.8910 -1.4933 -3.5218 12 8 0.5030 0.4355 -2.7472 13 6 2.9771 0.8082 -3.2743 14 6 2.8021 2.1737 -3.1086 15 6 3.7896 3.0626 -3.5039 16 6 4.9517 2.5981 -4.0764 17 6 5.1378 1.2149 -4.2547 18 6 6.3274 0.7261 -4.8423 19 1 6.6610 -0.2790 -4.6304 20 6 7.0726 1.5449 -5.6984 21 7 6.5236 2.6068 -6.2300 22 14 8.8511 1.1215 -6.0821 23 1 9.2309 -0.1200 -5.3614 24 1 9.0056 0.9115 -7.5441 25 1 9.7304 2.2361 -5.6465 26 6 4.1310 0.3214 -3.8444 27 1 -0.3633 0.5029 -0.8962 28 1 -0.3633 -1.0275 0.0126 29 1 -0.3634 0.5247 0.8836 30 1 3.5553 2.6108 -0.4489 31 1 2.9642 -0.2792 1.6202 32 1 1.2908 -0.7885 2.0201 33 1 1.4521 -2.7741 0.6592 34 1 3.1342 -2.6595 1.2760 35 1 2.7129 -2.7048 -1.3950 36 1 3.9117 -1.5612 -0.7167 37 1 1.8913 2.5472 -2.6646 38 1 3.6444 4.1239 -3.3661 39 1 5.7178 3.2927 -4.3881 40 1 7.0403 3.1744 -6.8231 41 1 4.2632 -0.7423 -3.9768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619471574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:19 Heat of formation + Delta-G solvation = -158.191974 kcal Electronic energy + Delta-G solvation = -29021.661131 eV Core-core repulsion = 24992.518652 eV Total energy + Delta-G solvation = -4029.142479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.77044 -39.49308 -39.25132 -38.41153 -37.16422 -37.01652 -35.65327 -32.48115 -32.06288 -31.91551 -31.57807 -27.34820 -27.21542 -25.00147 -23.69242 -22.88686 -22.68050 -21.67892 -20.32613 -19.76026 -19.00913 -18.64467 -17.80131 -17.26654 -17.01376 -16.73765 -16.57861 -16.37004 -16.19099 -15.27908 -15.12081 -14.87308 -14.60768 -14.41436 -14.29201 -13.82470 -13.78214 -13.63217 -13.32374 -13.19778 -13.12052 -13.07283 -13.05426 -12.86380 -12.71955 -12.62498 -12.48273 -12.40097 -12.18073 -12.00664 -11.61194 -11.54864 -11.48671 -11.37265 -11.13531 -10.19414 -9.82023 -9.53157 -8.72232 -6.43508 -0.69190 0.41763 0.84816 1.03869 1.38366 1.45113 1.53494 1.95479 1.99294 2.18571 2.54633 2.71572 3.10731 3.38946 3.54296 3.68237 3.79236 4.17769 4.22383 4.28229 4.36147 4.46785 4.51181 4.75377 4.79769 4.82969 4.86195 4.89334 4.94988 4.99038 5.06159 5.16375 5.20541 5.28619 5.33168 5.40636 5.44119 5.55480 5.57291 5.88368 5.94731 6.10795 6.53656 6.81431 6.85980 6.90347 8.26090 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.017164 B = 0.004160 C = 0.004016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.931034 B = 6729.828258 C = 6969.835180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.187 3.813 3 C 0.461 3.539 4 O -0.534 6.534 5 O -0.495 6.495 6 C -0.108 4.108 7 C -0.109 4.109 8 C 0.098 3.902 9 N -0.991 5.991 10 S 2.713 3.287 11 O -0.984 6.984 12 O -0.980 6.980 13 C -0.626 4.626 14 C -0.131 4.131 15 C -0.119 4.119 16 C -0.133 4.133 17 C 0.067 3.933 18 C -0.495 4.495 19 H 0.080 0.920 20 C 0.037 3.963 21 N -0.826 5.826 22 Si 0.983 3.017 23 H -0.256 1.256 24 H -0.269 1.269 25 H -0.262 1.262 26 C -0.137 4.137 27 H 0.066 0.934 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.416 0.584 31 H 0.087 0.913 32 H 0.121 0.879 33 H 0.097 0.903 34 H 0.118 0.882 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.291 0.709 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 -6.627 15.132 16.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.098 3.902 3 C 0.303 3.697 4 O -0.423 6.423 5 O -0.307 6.307 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.026 4.026 9 N -0.830 5.830 10 S 2.810 3.190 11 O -0.975 6.975 12 O -0.971 6.971 13 C -0.716 4.716 14 C -0.152 4.152 15 C -0.138 4.138 16 C -0.153 4.153 17 C 0.064 3.936 18 C -0.524 4.524 19 H 0.099 0.901 20 C -0.179 4.179 21 N -0.452 5.452 22 Si 0.804 3.196 23 H -0.179 1.179 24 H -0.194 1.194 25 H -0.187 1.187 26 C -0.158 4.158 27 H 0.085 0.915 28 H 0.119 0.881 29 H 0.113 0.887 30 H 0.277 0.723 31 H 0.106 0.894 32 H 0.139 0.861 33 H 0.115 0.885 34 H 0.136 0.864 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.102 0.898 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.881 -6.903 14.459 16.749 hybrid contribution 1.561 1.541 -0.874 2.361 sum -3.321 -5.362 13.585 14.978 Atomic orbital electron populations 1.22507 0.90150 1.05241 1.05220 1.20957 0.95877 0.84350 0.89054 1.24429 0.79367 0.92882 0.73065 1.90675 1.58291 1.48531 1.44814 1.84706 1.32844 1.37551 1.75554 1.22878 1.03185 0.95402 0.93252 1.22860 1.03828 0.95475 0.92574 1.22493 0.94866 0.87018 0.98222 1.58559 1.64721 1.40028 1.19716 1.00901 0.73468 0.72927 0.71694 1.93496 1.87289 1.47762 1.68955 1.93476 1.43695 1.73672 1.86213 1.30041 1.15722 1.09830 1.15985 1.20082 0.98869 0.91067 1.05164 1.21002 0.94216 0.98821 0.99808 1.21574 0.97795 0.95993 0.99953 1.17984 0.92458 0.92479 0.90684 1.19875 1.06446 1.01109 1.25016 0.90140 1.26760 1.04242 0.93648 0.93210 1.69834 1.38885 1.13776 1.22723 0.85132 0.76039 0.79765 0.78661 1.17943 1.19353 1.18658 1.20733 0.92791 0.98428 1.03844 0.91542 0.88057 0.88738 0.72291 0.89416 0.86094 0.88455 0.86351 0.89354 0.90738 0.87472 0.85955 0.86995 0.89838 0.87477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 7.86 71.98 0.57 -3.53 16 2 C 0.19 4.59 0.86 3.21 0.00 4.60 16 3 C 0.46 13.59 6.58 71.24 0.47 14.06 16 4 O -0.53 -17.89 16.87 21.96 0.37 -17.52 16 5 O -0.50 -14.47 10.13 -51.39 -0.52 -14.99 16 6 C -0.11 -1.60 6.03 31.87 0.19 -1.41 16 7 C -0.11 -1.33 7.09 32.07 0.23 -1.10 16 8 C 0.10 2.10 7.11 86.86 0.62 2.72 16 9 N -0.99 -28.22 2.89 -466.73 -1.35 -29.57 16 10 S 2.71 104.34 5.61 -56.49 -0.32 104.03 16 11 O -0.98 -41.95 16.59 -128.00 -2.12 -44.07 16 12 O -0.98 -40.21 14.26 -128.00 -1.83 -42.04 16 13 C -0.63 -27.50 5.23 22.22 0.12 -27.39 16 14 C -0.13 -5.59 7.15 22.46 0.16 -5.43 16 15 C -0.12 -5.21 10.02 22.22 0.22 -4.98 16 16 C -0.13 -6.62 8.70 22.73 0.20 -6.42 16 17 C 0.07 3.51 5.57 -21.29 -0.12 3.39 16 18 C -0.50 -25.76 9.05 23.46 0.21 -25.55 16 19 H 0.08 4.04 7.91 -2.91 -0.02 4.01 16 20 C 0.04 1.77 5.14 85.26 0.44 2.21 16 21 N -0.83 -41.72 10.97 21.83 0.24 -41.48 16 22 Si 0.98 36.71 29.59 68.60 2.03 38.74 16 23 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 24 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 25 H -0.26 -9.31 7.11 99.48 0.71 -8.61 16 26 C -0.14 -6.65 9.26 22.73 0.21 -6.44 16 27 H 0.07 2.05 5.61 -2.39 -0.01 2.03 16 28 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.09 1.93 7.87 -2.39 -0.02 1.91 16 30 H 0.42 10.22 9.06 -74.06 -0.67 9.54 16 31 H 0.09 1.26 7.84 -2.39 -0.02 1.24 16 32 H 0.12 1.16 7.83 -2.38 -0.02 1.14 16 33 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 1.90 7.78 -2.39 -0.02 1.89 16 36 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 37 H 0.11 4.36 7.59 -2.92 -0.02 4.34 16 38 H 0.12 4.59 8.06 -2.91 -0.02 4.56 16 39 H 0.11 5.74 6.18 -2.91 -0.02 5.72 16 40 H 0.29 13.20 8.30 -92.70 -0.77 12.43 16 41 H 0.11 5.09 7.60 -2.91 -0.02 5.07 16 Total: -1.00 -69.86 348.07 0.43 -69.44 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: 0.41 Total: 32.76 kcal Atomic # 6 Polarization: -58.80 SS G_CDS: 3.51 Total: -55.29 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.11 Total: -71.05 kcal Atomic # 8 Polarization: -114.53 SS G_CDS: -4.10 Total: -118.62 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Atomic # 16 Polarization: 104.34 SS G_CDS: -0.32 Total: 104.03 kcal Total: -69.86 0.43 -69.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619471574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.756 kcal (2) G-P(sol) polarization free energy of solvation -69.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds