Wall clock time and date at job start Tue Mar 31 2020 22:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86794 * 120.00347 * 2 1 4 4 H 1.48505 * 109.47385 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47268 * 299.99766 * 3 2 1 6 6 H 1.48503 * 109.47334 * 59.99917 * 3 2 1 7 7 C 1.39951 * 119.99742 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99895 * 167.85190 * 7 2 1 9 9 C 1.41400 * 119.99647 * 347.85953 * 7 2 1 10 10 C 1.40733 * 120.24589 * 328.35260 * 9 7 2 11 11 C 1.37591 * 119.74374 * 180.28065 * 10 9 7 12 12 C 1.38659 * 120.24924 * 359.49759 * 11 10 9 13 13 C 1.38616 * 120.49881 * 0.23564 * 12 11 10 14 14 S 1.76205 * 119.87161 * 180.02562 * 13 12 11 15 15 O 1.42100 * 106.39747 * 196.37544 * 14 13 12 16 16 O 1.42102 * 106.40261 * 329.29647 * 14 13 12 17 17 N 1.65600 * 107.21626 * 82.83739 * 14 13 12 18 18 C 1.46503 * 120.00094 * 66.87123 * 17 14 13 19 19 C 1.50699 * 110.43278 * 301.67357 * 18 17 14 20 20 O 1.20823 * 119.99591 * 140.39935 * 19 18 17 21 21 O 1.34228 * 119.99761 * 320.39700 * 19 18 17 22 22 C 1.54889 * 110.48617 * 179.13286 * 18 17 14 23 23 C 1.55241 * 102.59013 * 279.18721 * 22 18 17 24 24 C 1.54265 * 104.22901 * 322.08663 * 23 22 18 25 25 C 1.53875 * 106.60036 * 23.60762 * 24 23 22 26 26 C 1.37628 * 120.24844 * 0.02562 * 13 12 11 27 27 H 0.96999 * 119.99486 * 0.02562 * 1 2 3 28 28 H 1.07999 * 120.12631 * 0.03154 * 10 9 7 29 29 H 1.08003 * 119.87453 * 179.77304 * 11 10 9 30 30 H 1.08002 * 119.75142 * 180.25472 * 12 11 10 31 31 H 0.97004 * 119.99677 * 246.86103 * 17 14 13 32 32 H 0.96701 * 116.99459 * 180.02562 * 21 19 18 33 33 H 1.09003 * 110.75805 * 37.57518 * 22 18 17 34 34 H 1.08996 * 110.75648 * 160.94455 * 22 18 17 35 35 H 1.08998 * 110.46868 * 203.39577 * 23 22 18 36 36 H 1.09001 * 110.58352 * 80.82699 * 23 22 18 37 37 H 1.09003 * 110.03017 * 264.32750 * 24 23 22 38 38 H 1.08996 * 110.03415 * 142.89451 * 24 23 22 39 39 H 1.09007 * 110.03431 * 240.71741 * 25 24 23 40 40 H 1.08999 * 110.03319 * 119.28878 * 25 24 23 41 41 H 1.08006 * 120.12572 * 179.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8836 2.3964 1.2125 7 6 2.0080 -1.2120 0.0005 8 1 3.0698 -1.2226 -0.1963 9 6 1.3245 -2.4227 0.2586 10 6 0.2119 -2.4389 1.1202 11 6 -0.4419 -3.6238 1.3686 12 6 -0.0147 -4.7971 0.7656 13 6 1.0765 -4.7919 -0.0891 14 16 1.6048 -6.2923 -0.8470 15 8 2.9207 -6.0567 -1.3288 16 8 1.2855 -7.3358 0.0632 17 7 0.6535 -6.5286 -2.1817 18 6 0.7508 -5.6140 -3.3220 19 6 0.4537 -4.2011 -2.8900 20 8 1.0977 -3.2836 -3.3406 21 8 -0.5266 -3.9622 -2.0047 22 6 -0.2156 -6.0503 -4.4510 23 6 0.5764 -7.1850 -5.1546 24 6 2.0399 -6.6979 -5.1295 25 6 2.1508 -5.6990 -3.9643 26 6 1.7489 -3.6192 -0.3479 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1250 -1.5255 1.5877 29 1 -1.2938 -3.6393 2.0323 30 1 -0.5364 -5.7219 0.9631 31 1 0.0318 -7.2728 -2.2086 32 1 -0.6803 -3.0398 -1.7583 33 1 -1.1497 -6.4281 -4.0353 34 1 -0.4032 -5.2259 -5.1389 35 1 0.2331 -7.3091 -6.1817 36 1 0.4762 -8.1205 -4.6042 37 1 2.2850 -6.2036 -6.0696 38 1 2.7111 -7.5406 -4.9641 39 1 2.4498 -4.7200 -4.3389 40 1 2.8759 -6.0569 -3.2334 41 1 2.5992 -3.6175 -1.0138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619708555.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:11 Heat of formation + Delta-G solvation = -164.258806 kcal Electronic energy + Delta-G solvation = -29451.844393 eV Core-core repulsion = 25422.438836 eV Total energy + Delta-G solvation = -4029.405557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74637 -39.53826 -38.98228 -38.26319 -37.01797 -36.95502 -35.58340 -34.30412 -31.85575 -31.61462 -29.78770 -29.20849 -27.29991 -24.42208 -23.59205 -22.79120 -21.66119 -21.34361 -20.43458 -19.65062 -18.99532 -18.69720 -18.13536 -17.72150 -16.94031 -16.87617 -16.50102 -16.40043 -16.26871 -15.74878 -15.23520 -15.07386 -14.71086 -14.31867 -14.30297 -13.79899 -13.71232 -13.38716 -13.34766 -13.10125 -13.06889 -13.02463 -12.88148 -12.71878 -12.64367 -12.30370 -12.26192 -12.21902 -12.06723 -11.86514 -11.61385 -11.51419 -11.35193 -11.24456 -11.14126 -10.59481 -9.78444 -9.43947 -8.68738 -6.43344 -0.60605 0.41042 0.85661 1.12154 1.35116 1.41697 1.47433 1.97949 1.99480 2.18463 2.56552 2.72342 3.32449 3.38715 3.46577 3.52627 3.99530 4.10049 4.32620 4.34502 4.39431 4.44746 4.51635 4.58925 4.74628 4.87240 4.90949 4.93446 5.06072 5.09897 5.15817 5.23116 5.31760 5.34900 5.42229 5.50548 5.57507 5.66547 5.89928 5.97648 6.02976 6.14751 6.55156 6.82134 6.89213 6.91771 8.30355 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014860 B = 0.005063 C = 0.004420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1883.746991 B = 5528.771824 C = 6333.961142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.044 3.956 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.268 1.268 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.073 3.927 10 C -0.119 4.119 11 C -0.120 4.120 12 C -0.111 4.111 13 C -0.634 4.634 14 S 2.704 3.296 15 O -0.985 6.985 16 O -0.979 6.979 17 N -1.077 6.077 18 C 0.192 3.808 19 C 0.458 3.542 20 O -0.530 6.530 21 O -0.490 6.490 22 C -0.109 4.109 23 C -0.114 4.114 24 C -0.117 4.117 25 C -0.165 4.165 26 C -0.135 4.135 27 H 0.289 0.711 28 H 0.108 0.892 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.437 0.563 32 H 0.409 0.591 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.968 -11.256 -8.790 15.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.170 4.170 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.193 1.193 6 H -0.184 1.184 7 C -0.532 4.532 8 H 0.080 0.920 9 C 0.070 3.930 10 C -0.139 4.139 11 C -0.139 4.139 12 C -0.131 4.131 13 C -0.724 4.724 14 S 2.798 3.202 15 O -0.975 6.975 16 O -0.970 6.970 17 N -0.840 5.840 18 C 0.101 3.899 19 C 0.298 3.702 20 O -0.418 6.418 21 O -0.301 6.301 22 C -0.147 4.147 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.204 4.204 26 C -0.157 4.157 27 H 0.099 0.901 28 H 0.126 0.874 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.277 0.723 32 H 0.269 0.731 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.117 0.883 36 H 0.107 0.893 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.132 -11.690 -8.741 15.170 hybrid contribution -0.132 2.421 0.542 2.485 sum -4.264 -9.269 -8.199 13.089 Atomic orbital electron populations 1.69725 1.08100 1.30425 1.37024 1.26442 0.95673 1.03534 0.91374 0.85301 0.79218 0.77102 0.79008 1.19186 1.19319 1.18386 1.19684 0.96076 0.92021 1.45401 0.92021 1.17827 0.92705 0.92282 0.90192 1.21506 0.97697 0.97090 0.97560 1.21084 0.99918 0.92434 1.00425 1.20356 0.95761 0.98311 0.98701 1.30026 1.09377 1.17508 1.15478 1.01267 0.73144 0.73365 0.72447 1.93457 1.37507 1.86539 1.79968 1.93523 1.84928 1.55414 1.63105 1.55069 1.59913 1.39532 1.29485 1.20947 1.00338 0.80675 0.87968 1.24221 0.76985 0.93155 0.75848 1.90717 1.49173 1.47314 1.54571 1.84481 1.51771 1.37183 1.56655 1.22937 0.97637 1.00426 0.93734 1.22487 0.92934 0.97467 1.02271 1.22135 0.98484 0.98043 0.96794 1.23180 0.93954 1.02599 1.00627 1.20702 1.00639 0.92798 1.01513 0.90066 0.87441 0.85358 0.85062 0.72332 0.73134 0.87123 0.89330 0.88295 0.89325 0.90363 0.90296 0.90761 0.88510 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.64 11.12 21.83 0.24 -40.39 16 2 C 0.04 2.19 5.21 85.26 0.44 2.63 16 3 Si 0.97 38.92 29.58 68.60 2.03 40.95 16 4 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 5 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 6 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 7 C -0.50 -27.10 9.04 23.46 0.21 -26.89 16 8 H 0.06 3.41 7.87 -2.91 -0.02 3.39 16 9 C 0.07 3.76 5.50 -21.29 -0.12 3.65 16 10 C -0.12 -5.64 8.64 22.73 0.20 -5.45 16 11 C -0.12 -4.85 10.02 22.22 0.22 -4.63 16 12 C -0.11 -4.32 8.89 22.46 0.20 -4.12 16 13 C -0.63 -26.41 3.47 22.22 0.08 -26.33 16 14 S 2.70 96.70 5.61 -56.49 -0.32 96.39 16 15 O -0.98 -40.30 13.85 -128.00 -1.77 -42.07 16 16 O -0.98 -36.73 17.47 -128.00 -2.24 -38.97 16 17 N -1.08 -28.07 5.40 -150.92 -0.81 -28.88 16 18 C 0.19 5.28 0.87 3.93 0.00 5.28 16 19 C 0.46 16.50 4.59 71.24 0.33 16.83 16 20 O -0.53 -23.33 16.03 21.97 0.35 -22.97 16 21 O -0.49 -17.40 10.01 -51.39 -0.51 -17.92 16 22 C -0.11 -1.94 5.86 32.01 0.19 -1.75 16 23 C -0.11 -1.54 6.80 31.79 0.22 -1.33 16 24 C -0.12 -2.21 6.80 31.32 0.21 -1.99 16 25 C -0.16 -4.76 5.76 31.32 0.18 -4.58 16 26 C -0.14 -6.56 6.76 22.73 0.15 -6.41 16 27 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 28 H 0.11 5.33 6.50 -2.91 -0.02 5.31 16 29 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 30 H 0.13 4.40 7.78 -2.91 -0.02 4.38 16 31 H 0.44 7.90 8.62 -96.74 -0.83 7.06 16 32 H 0.41 15.96 9.10 -74.06 -0.67 15.29 16 33 H 0.11 1.48 8.09 -2.39 -0.02 1.47 16 34 H 0.09 1.61 8.05 -2.39 -0.02 1.59 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 2.46 6.75 -2.38 -0.02 2.45 16 40 H 0.10 3.22 4.92 -2.39 -0.01 3.20 16 41 H 0.09 4.62 7.46 -2.91 -0.02 4.60 16 Total: -1.00 -67.34 342.66 -0.92 -68.27 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -0.41 Total: 40.67 kcal Atomic # 6 Polarization: -57.60 SS G_CDS: 2.52 Total: -55.08 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -0.57 Total: -69.27 kcal Atomic # 8 Polarization: -117.76 SS G_CDS: -4.17 Total: -121.93 kcal Atomic # 14 Polarization: 38.92 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 16 Polarization: 96.70 SS G_CDS: -0.32 Total: 96.39 kcal Total: -67.34 -0.92 -68.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619708555.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.990 kcal (2) G-P(sol) polarization free energy of solvation -67.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds