Wall clock time and date at job start Tue Mar 31 2020 23:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47028 * 2 1 4 4 O 1.42902 * 109.47461 * 240.00041 * 2 1 3 5 5 C 1.50693 * 109.47187 * 120.00084 * 2 1 3 6 6 O 1.20838 * 119.99868 * 265.00085 * 5 2 1 7 7 O 1.34230 * 120.00388 * 85.00069 * 5 2 1 8 8 C 1.45194 * 117.00010 * 180.02562 * 7 5 2 9 9 C 1.50707 * 109.47005 * 180.02562 * 8 7 5 10 10 O 1.21297 * 119.99563 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00002 * 180.02562 * 9 8 7 12 12 C 1.39942 * 119.99799 * 175.96006 * 11 9 8 13 13 C 1.38681 * 120.11707 * 34.38985 * 12 11 9 14 14 C 1.38215 * 120.01772 * 179.97438 * 13 12 11 15 15 C 1.38392 * 120.25617 * 0.02738 * 14 13 12 16 16 C 1.38091 * 120.22500 * 359.97283 * 15 14 13 17 17 C 1.38989 * 119.97664 * 0.02562 * 16 15 14 18 18 S 1.76199 * 120.12408 * 180.02562 * 17 16 15 19 19 C 1.76201 * 99.99925 * 353.11271 * 18 17 16 20 20 H 1.08000 * 119.99974 * 5.09920 * 19 18 17 21 21 C 1.38688 * 119.99678 * 185.09953 * 19 18 17 22 22 N 1.31653 * 120.00309 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99717 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46971 * 60.00434 * 23 21 19 25 25 H 1.48497 * 109.47309 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47453 * 300.00355 * 23 21 19 27 27 H 1.08996 * 109.47665 * 299.99793 * 1 2 3 28 28 H 1.09004 * 109.47413 * 60.00121 * 1 2 3 29 29 H 1.09006 * 109.46911 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47372 * 179.97438 * 3 2 1 31 31 H 1.09007 * 109.47383 * 300.00343 * 3 2 1 32 32 H 1.09001 * 109.47162 * 59.99513 * 3 2 1 33 33 H 0.96691 * 113.99999 * 179.97438 * 4 2 1 34 34 H 1.08998 * 109.47457 * 60.00467 * 8 7 5 35 35 H 1.09003 * 109.47459 * 299.99812 * 8 7 5 36 36 H 0.96998 * 120.00320 * 355.95432 * 11 9 8 37 37 H 1.08000 * 119.98619 * 0.26383 * 13 12 11 38 38 H 1.08003 * 119.87617 * 179.97438 * 14 13 12 39 39 H 1.07991 * 119.89241 * 179.97438 * 15 14 13 40 40 H 1.08001 * 120.00955 * 180.02562 * 16 15 14 41 41 H 0.97003 * 119.99851 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0323 -0.7104 1.2304 6 8 2.3197 -0.0772 2.2186 7 8 2.1606 -2.0465 1.2287 8 6 2.6496 -2.6634 2.4487 9 6 2.7279 -4.1566 2.2602 10 8 2.4030 -4.6520 1.2018 11 7 3.1580 -4.9414 3.2679 12 6 3.1508 -6.3332 3.1228 13 6 3.4087 -6.9052 1.8860 14 6 3.4016 -8.2801 1.7451 15 6 3.1372 -9.0914 2.8346 16 6 2.8791 -8.5328 4.0709 17 6 2.8838 -7.1513 4.2234 18 16 2.5556 -6.4345 5.7991 19 6 2.1026 -7.8774 6.7033 20 1 2.1771 -8.8503 6.2404 21 6 1.6502 -7.7637 8.0094 22 7 1.5589 -6.5776 8.5735 23 14 1.1692 -9.2933 8.9677 24 1 2.3400 -10.2010 9.0713 25 1 0.7220 -8.9042 10.3292 26 1 0.0629 -9.9907 8.2643 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.9703 -0.7114 -1.2330 34 1 1.9691 -2.4356 3.2691 35 1 3.6411 -2.2743 2.6804 36 1 3.4725 -4.5415 4.0938 37 1 3.6197 -6.2761 1.0338 38 1 3.6023 -8.7231 0.7807 39 1 3.1328 -10.1650 2.7178 40 1 2.6736 -9.1693 4.9189 41 1 1.2421 -6.4981 9.4869 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725935538.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:04:36 Heat of formation + Delta-G solvation = -161.545379 kcal Electronic energy + Delta-G solvation = -26199.299580 eV Core-core repulsion = 22170.011687 eV Total energy + Delta-G solvation = -4029.287894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.13222 -41.36621 -39.36108 -38.53150 -37.63175 -35.88496 -34.73946 -33.23270 -31.93937 -31.49058 -29.26628 -28.38541 -27.86854 -25.30638 -23.95406 -23.46644 -21.61918 -21.46816 -20.20957 -19.77409 -18.80156 -18.03387 -17.99986 -17.95549 -17.50895 -16.99916 -16.54847 -16.43766 -15.87954 -15.72651 -15.55095 -15.10323 -14.74713 -14.63516 -14.38020 -14.14112 -13.83466 -13.65226 -13.39354 -13.38882 -13.24319 -12.98026 -12.96085 -12.89998 -12.81046 -12.72040 -12.14343 -12.02461 -11.84269 -11.73008 -11.41248 -11.36177 -11.17603 -10.91360 -10.67564 -10.37289 -9.27872 -8.50435 -8.39663 -6.25455 0.31371 0.50591 0.84691 0.99764 1.27151 1.38889 1.39959 1.44545 1.57608 2.14790 2.17485 2.83309 2.95876 3.05162 3.11717 3.37072 3.38222 3.72521 3.79001 3.90587 3.95687 4.05784 4.26683 4.47652 4.62029 4.63223 4.64907 4.67386 4.71338 4.81035 4.99485 5.01909 5.14089 5.17913 5.30029 5.37035 5.47523 5.59398 5.69720 6.09730 6.16747 6.23737 6.34073 6.65229 6.90465 6.94913 8.57934 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002628 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.031487 B =10653.610689 C =12080.641236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.151 3.849 3 C -0.163 4.163 4 O -0.547 6.547 5 C 0.435 3.565 6 O -0.517 6.517 7 O -0.333 6.333 8 C 0.049 3.951 9 C 0.517 3.483 10 O -0.536 6.536 11 N -0.651 5.651 12 C 0.119 3.881 13 C -0.110 4.110 14 C -0.131 4.131 15 C -0.109 4.109 16 C -0.145 4.145 17 C -0.121 4.121 18 S -0.011 6.011 19 C -0.565 4.565 20 H 0.098 0.902 21 C 0.027 3.973 22 N -0.902 5.902 23 Si 0.991 3.009 24 H -0.261 1.261 25 H -0.275 1.275 26 H -0.265 1.265 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.397 0.603 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.419 0.581 37 H 0.136 0.864 38 H 0.152 0.848 39 H 0.147 0.853 40 H 0.127 0.873 41 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.782 11.184 -15.868 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.109 3.891 3 C -0.220 4.220 4 O -0.355 6.355 5 C 0.277 3.723 6 O -0.406 6.406 7 O -0.248 6.248 8 C -0.028 4.028 9 C 0.305 3.695 10 O -0.412 6.412 11 N -0.297 5.297 12 C 0.017 3.983 13 C -0.132 4.132 14 C -0.154 4.154 15 C -0.129 4.129 16 C -0.171 4.171 17 C -0.238 4.238 18 S 0.240 5.760 19 C -0.712 4.712 20 H 0.116 0.884 21 C -0.180 4.180 22 N -0.537 5.537 23 Si 0.813 3.187 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.190 1.190 27 H 0.106 0.894 28 H 0.122 0.878 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.121 0.879 32 H 0.097 0.903 33 H 0.248 0.752 34 H 0.134 0.866 35 H 0.148 0.852 36 H 0.256 0.744 37 H 0.154 0.846 38 H 0.170 0.830 39 H 0.165 0.835 40 H 0.144 0.856 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.960 12.338 -15.639 20.016 hybrid contribution 0.418 -1.815 1.394 2.326 sum 2.377 10.523 -14.245 17.869 Atomic orbital electron populations 1.21903 0.89016 1.04015 1.05364 1.21355 0.97639 0.91328 0.78816 1.22401 1.02580 0.91866 1.05188 1.86641 1.28955 1.79094 1.40845 1.25723 0.74236 0.80379 0.91912 1.90693 1.46437 1.67287 1.36138 1.86643 1.76538 1.23035 1.38620 1.22733 1.04316 0.88683 0.87033 1.20453 0.76547 0.88936 0.83599 1.90709 1.47846 1.75805 1.26871 1.43147 1.63328 1.04336 1.18912 1.17284 1.05211 0.81893 0.93872 1.21198 1.00238 0.96085 0.95640 1.21242 1.02076 0.92370 0.99711 1.21327 0.99002 1.00928 0.91628 1.21397 1.03091 0.93341 0.99234 1.22477 1.04529 0.97523 0.99235 1.82955 1.79631 1.15481 0.97905 1.23588 1.51773 0.94551 1.01243 0.88449 1.26020 0.93733 1.00632 0.97575 1.70094 1.43849 1.24751 1.14998 0.85090 0.79190 0.77411 0.77018 1.18553 1.20004 1.18999 0.89379 0.87827 0.92085 0.91050 0.87925 0.90274 0.75246 0.86583 0.85161 0.74357 0.84632 0.83009 0.83492 0.85584 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.83 71.98 0.64 -1.53 16 2 C 0.15 2.48 1.36 -11.54 -0.02 2.47 16 3 C -0.16 -1.84 8.35 71.98 0.60 -1.24 16 4 O -0.55 -9.23 12.77 -135.70 -1.73 -10.96 16 5 C 0.43 9.78 6.80 71.23 0.48 10.26 16 6 O -0.52 -13.29 15.84 21.93 0.35 -12.94 16 7 O -0.33 -8.75 9.51 -42.73 -0.41 -9.16 16 8 C 0.05 1.21 5.95 71.24 0.42 1.64 16 9 C 0.52 16.36 7.75 87.66 0.68 17.04 16 10 O -0.54 -20.23 13.92 15.72 0.22 -20.01 16 11 N -0.65 -21.67 5.02 -302.98 -1.52 -23.19 16 12 C 0.12 4.58 6.32 38.31 0.24 4.82 16 13 C -0.11 -3.86 8.69 22.37 0.19 -3.67 16 14 C -0.13 -4.05 10.04 22.30 0.22 -3.82 16 15 C -0.11 -3.54 10.03 22.27 0.22 -3.32 16 16 C -0.15 -5.90 9.26 22.42 0.21 -5.70 16 17 C -0.12 -5.26 6.12 22.81 0.14 -5.12 16 18 S -0.01 -0.56 20.53 -56.49 -1.16 -1.72 16 19 C -0.56 -30.24 9.07 67.93 0.62 -29.63 16 20 H 0.10 4.98 4.83 -2.91 -0.01 4.97 16 21 C 0.03 1.41 5.49 84.83 0.47 1.88 16 22 N -0.90 -50.52 13.22 21.63 0.29 -50.23 16 23 Si 0.99 41.34 29.55 68.60 2.03 43.36 16 24 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 25 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 27 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.08 0.97 7.87 -2.39 -0.02 0.95 16 33 H 0.40 4.03 9.04 -74.06 -0.67 3.36 16 34 H 0.12 2.70 8.13 -2.39 -0.02 2.68 16 35 H 0.13 2.50 8.13 -2.39 -0.02 2.48 16 36 H 0.42 12.73 7.96 -92.71 -0.74 11.99 16 37 H 0.14 4.65 6.20 -2.91 -0.02 4.63 16 38 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.15 3.75 8.06 -2.92 -0.02 3.72 16 40 H 0.13 5.39 4.95 -2.91 -0.01 5.37 16 41 H 0.28 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -71.65 367.99 2.87 -68.77 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.31 Total: 31.97 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 5.12 Total: -15.90 kcal Atomic # 7 Polarization: -72.19 SS G_CDS: -1.24 Total: -73.42 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -1.57 Total: -53.07 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.36 kcal Atomic # 16 Polarization: -0.56 SS G_CDS: -1.16 Total: -1.72 kcal Total: -71.65 2.87 -68.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725935538.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.772 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds