Wall clock time and date at job start Tue Mar 31 2020 22:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32635 * 124.64828 * 2 1 4 4 C 1.44623 * 113.10444 * 179.97438 * 3 2 1 5 5 C 1.46360 * 123.53151 * 180.02562 * 4 3 2 6 6 O 1.21352 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99846 * 0.02562 * 5 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 5 10 10 O 1.20826 * 119.99685 * 0.02562 * 9 8 7 11 11 O 1.34232 * 120.00079 * 179.97438 * 9 8 7 12 12 C 1.45208 * 116.99618 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46716 * 179.97438 * 12 11 9 14 14 O 1.21291 * 120.00149 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99910 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00065 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99985 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99888 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00135 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46936 * 90.00031 * 20 18 16 22 22 H 1.48496 * 109.47097 * 210.00814 * 20 18 16 23 23 H 1.48507 * 109.47072 * 330.00405 * 20 18 16 24 24 C 1.36487 * 112.93965 * 0.26499 * 4 3 2 25 25 C 1.50697 * 124.61955 * 179.72919 * 24 4 3 26 26 S 1.70443 * 110.76110 * 359.59325 * 24 4 3 27 27 H 1.08998 * 109.46787 * 89.99939 * 1 2 3 28 28 H 1.08997 * 109.46758 * 210.00157 * 1 2 3 29 29 H 1.09000 * 109.46974 * 329.99834 * 1 2 3 30 30 H 1.07994 * 123.44613 * 359.94298 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99944 * 7 5 4 32 32 H 1.09001 * 109.47380 * 60.00031 * 7 5 4 33 33 H 1.09002 * 109.47153 * 299.99998 * 8 7 5 34 34 H 1.08998 * 109.47533 * 59.99628 * 8 7 5 35 35 H 1.08998 * 109.46772 * 300.00117 * 12 11 9 36 36 H 1.08996 * 109.46813 * 60.00493 * 12 11 9 37 37 H 0.97002 * 119.99638 * 0.02562 * 15 13 12 38 38 H 0.97003 * 120.00082 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.46968 * 90.00436 * 25 24 4 40 40 H 1.09006 * 109.47239 * 210.00004 * 25 24 4 41 41 H 1.08996 * 109.47303 * 330.00363 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2612 1.0911 0.0000 4 6 3.6781 0.8017 0.0006 5 6 4.7144 1.8353 0.0013 6 8 5.8862 1.5197 0.0013 7 6 4.3263 3.2914 0.0019 8 6 5.5887 4.1558 0.0032 9 6 5.2006 5.6119 0.0032 10 8 4.0339 5.9261 0.0028 11 8 6.1510 6.5598 0.0048 12 6 5.7040 7.9414 0.0053 13 6 6.9013 8.8566 0.0077 14 8 8.0210 8.3905 0.0083 15 7 6.7278 10.1932 0.0080 16 6 7.8169 11.0258 0.0107 17 1 8.8140 10.6107 0.0121 18 6 7.6380 12.4037 0.0116 19 7 6.4248 12.9088 0.0103 20 14 9.1221 13.5383 0.0145 21 1 9.5171 13.8400 -1.3847 22 1 8.7780 14.8015 0.7153 23 1 10.2508 12.8750 0.7155 24 6 3.9478 -0.5362 -0.0048 25 6 5.3327 -1.1304 -0.0114 26 16 2.5049 -1.4434 0.0008 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.8583 2.0931 -0.0009 31 1 3.7363 3.5106 -0.8880 32 1 3.7360 3.5098 0.8919 33 1 6.1783 3.9365 0.8934 34 1 6.1793 3.9376 -0.8865 35 1 5.1041 8.1295 -0.8851 36 1 5.1026 8.1283 0.8948 37 1 5.8322 10.5660 0.0071 38 1 6.2999 13.8708 0.0113 39 1 5.6699 -1.2772 1.0147 40 1 5.3139 -2.0899 -0.5284 41 1 6.0158 -0.4541 -0.5252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731233958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:41 Heat of formation + Delta-G solvation = -143.908330 kcal Electronic energy + Delta-G solvation = -25140.281747 eV Core-core repulsion = 21111.758654 eV Total energy + Delta-G solvation = -4028.523094 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56244 -39.94877 -38.14734 -37.50437 -36.17796 -33.99085 -33.61565 -33.16145 -31.37161 -30.04293 -28.64425 -27.07792 -25.31147 -24.53911 -23.34032 -20.95932 -20.37835 -19.56798 -18.92746 -18.06202 -17.68393 -17.26056 -16.71394 -16.50804 -15.89738 -15.66434 -15.42846 -14.78404 -14.69229 -14.38008 -14.26799 -14.07802 -13.91497 -13.70562 -13.44016 -13.35971 -13.07753 -12.85974 -12.51625 -12.26131 -12.21711 -12.04145 -11.96944 -11.83890 -11.61283 -11.43910 -11.33817 -11.12660 -10.43638 -10.42513 -10.40071 -10.27700 -9.86439 -9.59696 -9.03717 -8.85918 -8.50964 -8.07373 -6.49207 -3.91155 0.27339 1.02978 1.33596 1.46829 2.31376 2.67348 2.68929 3.14131 3.24142 3.30486 3.74919 3.86309 4.13656 4.21284 4.39105 4.50905 4.74270 4.76477 4.83012 4.84633 5.06480 5.07001 5.13526 5.15801 5.16669 5.22868 5.35272 5.43904 5.56034 5.56447 5.58186 5.65778 5.70979 5.72623 5.84073 5.94168 6.06833 6.64701 7.24991 7.48674 7.84419 7.97257 8.49660 9.08093 9.40311 9.90485 10.68031 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.032132 B = 0.001619 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.191145 B =17285.238576 C =18120.070829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.206 4.206 3 C -0.100 4.100 4 C -0.202 4.202 5 C 0.419 3.581 6 O -0.452 6.452 7 C -0.150 4.150 8 C -0.105 4.105 9 C 0.460 3.540 10 O -0.519 6.519 11 O -0.324 6.324 12 C 0.060 3.940 13 C 0.438 3.562 14 O -0.575 6.575 15 N -0.553 5.553 16 C -0.302 4.302 17 H 0.106 0.894 18 C 0.024 3.976 19 N -0.898 5.898 20 Si 0.934 3.066 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 C -0.139 4.139 25 C -0.098 4.098 26 S 0.176 5.824 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.154 0.846 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.395 0.605 38 H 0.274 0.726 39 H 0.082 0.918 40 H 0.068 0.932 41 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.605 -28.304 -0.050 31.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.322 4.322 3 C -0.127 4.127 4 C -0.216 4.216 5 C 0.296 3.704 6 O -0.328 6.328 7 C -0.188 4.188 8 C -0.142 4.142 9 C 0.303 3.697 10 O -0.408 6.408 11 O -0.239 6.239 12 C -0.017 4.017 13 C 0.223 3.777 14 O -0.459 6.459 15 N -0.191 5.191 16 C -0.431 4.431 17 H 0.124 0.876 18 C -0.178 4.178 19 N -0.538 5.538 20 Si 0.761 3.239 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.259 4.259 25 C -0.157 4.157 26 S 0.442 5.558 27 H 0.094 0.906 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.171 0.829 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.228 0.772 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -12.966 -29.983 -0.040 32.666 hybrid contribution 0.093 2.593 0.001 2.595 sum -12.872 -27.390 -0.039 30.264 Atomic orbital electron populations 1.20358 0.87367 1.03402 1.03006 1.24279 1.00489 0.95963 1.11460 1.21214 0.90764 0.99726 1.01030 1.20626 0.94716 0.93333 1.12951 1.21655 0.87507 0.90072 0.71143 1.90524 1.20604 1.84752 1.36969 1.21803 0.98737 0.91815 1.06405 1.21108 0.99200 0.86540 1.07375 1.23664 0.84148 0.89513 0.72356 1.90644 1.20101 1.83788 1.46285 1.86563 1.38370 1.16208 1.82729 1.22750 0.97433 0.78065 1.03470 1.19344 0.89243 0.83224 0.85935 1.90567 1.24833 1.75382 1.55134 1.41706 1.10122 1.03325 1.63909 1.19734 0.88405 0.86867 1.48131 0.87609 1.25312 0.98096 0.97461 0.96916 1.69616 1.20748 1.13702 1.49756 0.85791 0.80710 0.78922 0.78488 1.20270 1.20823 1.19283 1.24839 1.01855 0.97051 1.02151 1.20677 0.90250 1.00996 1.03741 1.83065 0.93539 1.08722 1.70431 0.90592 0.91277 0.90210 0.82871 0.87278 0.87259 0.86898 0.86912 0.89530 0.89538 0.77169 0.91650 0.89935 0.91308 0.87911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.34 36.01 0.37 0.01 16 2 C -0.21 -1.40 6.43 -36.20 -0.23 -1.63 16 3 C -0.10 -0.76 9.72 -38.96 -0.38 -1.14 16 4 C -0.20 -1.85 5.97 -104.75 -0.63 -2.47 16 5 C 0.42 4.21 7.11 -31.04 -0.22 3.99 16 6 O -0.45 -5.48 13.71 5.49 0.08 -5.40 16 7 C -0.15 -1.40 4.11 -27.88 -0.11 -1.51 16 8 C -0.10 -1.19 5.10 -27.89 -0.14 -1.34 16 9 C 0.46 6.99 7.96 36.00 0.29 7.28 16 10 O -0.52 -8.48 15.73 -18.75 -0.29 -8.78 16 11 O -0.32 -6.08 9.76 -45.91 -0.45 -6.53 16 12 C 0.06 1.16 5.94 36.01 0.21 1.37 16 13 C 0.44 10.68 7.86 -10.99 -0.09 10.60 16 14 O -0.58 -16.24 16.08 -14.11 -0.23 -16.47 16 15 N -0.55 -14.09 5.29 -10.96 -0.06 -14.15 16 16 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 17 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 18 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 19 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 20 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 24 C -0.14 -1.19 6.36 -34.94 -0.22 -1.41 16 25 C -0.10 -0.75 9.60 36.00 0.35 -0.41 16 26 S 0.18 1.17 22.94 -107.50 -2.47 -1.30 16 27 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.15 0.94 7.76 -52.49 -0.41 0.54 16 31 H 0.11 0.93 8.10 -51.93 -0.42 0.51 16 32 H 0.11 0.94 8.10 -51.93 -0.42 0.52 16 33 H 0.11 1.23 8.10 -51.93 -0.42 0.81 16 34 H 0.11 1.23 8.10 -51.93 -0.42 0.81 16 35 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 36 H 0.09 1.50 8.13 -51.93 -0.42 1.08 16 37 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 38 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.95 5.96 -51.93 -0.31 0.64 16 LS Contribution 375.57 15.07 5.66 5.66 Total: -1.00 -33.81 375.57 -8.29 -42.11 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.19 Total: 7.15 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.04 Total: 5.34 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: 0.67 Total: -37.57 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -0.89 Total: -37.18 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -2.47 Total: -1.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.81 -8.29 -42.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731233958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.801 kcal (2) G-P(sol) polarization free energy of solvation -33.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds