Wall clock time and date at job start Tue Mar 31 2020 22:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.32635 * 124.64828 * 2 1 4 4 C 1.44623 * 113.10444 * 179.97438 * 3 2 1 5 5 C 1.46360 * 123.53151 * 180.02562 * 4 3 2 6 6 O 1.21352 * 120.00023 * 180.02562 * 5 4 3 7 7 C 1.50701 * 119.99846 * 0.02562 * 5 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47466 * 179.97438 * 8 7 5 10 10 O 1.20826 * 119.99685 * 0.02562 * 9 8 7 11 11 O 1.34232 * 120.00079 * 179.97438 * 9 8 7 12 12 C 1.45208 * 116.99618 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46716 * 179.97438 * 12 11 9 14 14 O 1.21291 * 120.00149 * 0.02562 * 13 12 11 15 15 N 1.34776 * 119.99910 * 179.97438 * 13 12 11 16 16 C 1.37097 * 120.00065 * 179.97438 * 15 13 12 17 17 H 1.08002 * 119.99985 * 0.02562 * 16 15 13 18 18 C 1.38949 * 119.99888 * 180.02562 * 16 15 13 19 19 N 1.31414 * 120.00135 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00002 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.46936 * 90.00031 * 20 18 16 22 22 H 1.48496 * 109.47097 * 210.00814 * 20 18 16 23 23 H 1.48507 * 109.47072 * 330.00405 * 20 18 16 24 24 C 1.36487 * 112.93965 * 0.26499 * 4 3 2 25 25 C 1.50697 * 124.61955 * 179.72919 * 24 4 3 26 26 S 1.70443 * 110.76110 * 359.59325 * 24 4 3 27 27 H 1.08998 * 109.46787 * 89.99939 * 1 2 3 28 28 H 1.08997 * 109.46758 * 210.00157 * 1 2 3 29 29 H 1.09000 * 109.46974 * 329.99834 * 1 2 3 30 30 H 1.07994 * 123.44613 * 359.94298 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99944 * 7 5 4 32 32 H 1.09001 * 109.47380 * 60.00031 * 7 5 4 33 33 H 1.09002 * 109.47153 * 299.99998 * 8 7 5 34 34 H 1.08998 * 109.47533 * 59.99628 * 8 7 5 35 35 H 1.08998 * 109.46772 * 300.00117 * 12 11 9 36 36 H 1.08996 * 109.46813 * 60.00493 * 12 11 9 37 37 H 0.97002 * 119.99638 * 0.02562 * 15 13 12 38 38 H 0.97003 * 120.00082 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.46968 * 90.00436 * 25 24 4 40 40 H 1.09006 * 109.47239 * 210.00004 * 25 24 4 41 41 H 1.08996 * 109.47303 * 330.00363 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2612 1.0911 0.0000 4 6 3.6781 0.8017 0.0006 5 6 4.7144 1.8353 0.0013 6 8 5.8862 1.5197 0.0013 7 6 4.3263 3.2914 0.0019 8 6 5.5887 4.1558 0.0032 9 6 5.2006 5.6119 0.0032 10 8 4.0339 5.9261 0.0028 11 8 6.1510 6.5598 0.0048 12 6 5.7040 7.9414 0.0053 13 6 6.9013 8.8566 0.0077 14 8 8.0210 8.3905 0.0083 15 7 6.7278 10.1932 0.0080 16 6 7.8169 11.0258 0.0107 17 1 8.8140 10.6107 0.0121 18 6 7.6380 12.4037 0.0116 19 7 6.4248 12.9088 0.0103 20 14 9.1221 13.5383 0.0145 21 1 9.5171 13.8400 -1.3847 22 1 8.7780 14.8015 0.7153 23 1 10.2508 12.8750 0.7155 24 6 3.9478 -0.5362 -0.0048 25 6 5.3327 -1.1304 -0.0114 26 16 2.5049 -1.4434 0.0008 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.8583 2.0931 -0.0009 31 1 3.7363 3.5106 -0.8880 32 1 3.7360 3.5098 0.8919 33 1 6.1783 3.9365 0.8934 34 1 6.1793 3.9376 -0.8865 35 1 5.1041 8.1295 -0.8851 36 1 5.1026 8.1283 0.8948 37 1 5.8322 10.5660 0.0071 38 1 6.2999 13.8708 0.0113 39 1 5.6699 -1.2772 1.0147 40 1 5.3139 -2.0899 -0.5284 41 1 6.0158 -0.4541 -0.5252 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731233958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:41 Heat of formation + Delta-G solvation = -163.259641 kcal Electronic energy + Delta-G solvation = -25141.120883 eV Core-core repulsion = 21111.758654 eV Total energy + Delta-G solvation = -4029.362230 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.75489 -40.85948 -40.02515 -38.13870 -37.58610 -36.04346 -34.35079 -33.86051 -33.42186 -30.72949 -30.06248 -28.00294 -26.58827 -25.77073 -24.14272 -21.88676 -21.43677 -21.24290 -20.08565 -19.67223 -18.76650 -17.98915 -17.96150 -17.86301 -17.30428 -16.70628 -16.63876 -16.27590 -15.77810 -15.76448 -15.48384 -15.07995 -14.79140 -14.54896 -14.35569 -14.10821 -13.97008 -13.84910 -13.66095 -13.59174 -13.54933 -13.09378 -12.94279 -12.79698 -12.59484 -12.48446 -12.47954 -12.27529 -12.12486 -11.85285 -11.85071 -11.66565 -11.58565 -10.62467 -10.51823 -10.12590 -9.56862 -9.42372 -8.53142 -6.03835 -0.36279 0.49421 0.72548 0.91449 1.09176 1.35331 1.36234 1.45095 1.57534 1.86340 2.00353 2.29289 2.94730 3.12324 3.22458 3.53192 3.68022 3.80991 3.93250 4.01178 4.11728 4.16850 4.22274 4.23239 4.36120 4.49942 4.60724 4.62437 4.67046 4.74986 4.78921 4.88488 4.96419 5.11929 5.17945 5.22006 5.33448 5.37006 5.43267 5.88328 6.44963 6.50716 6.63059 7.02260 7.38995 7.92988 8.63797 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.032132 B = 0.001619 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.191145 B =17285.238576 C =18120.070829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.209 4.209 3 C -0.111 4.111 4 C -0.221 4.221 5 C 0.423 3.577 6 O -0.480 6.480 7 C -0.142 4.142 8 C -0.099 4.099 9 C 0.463 3.537 10 O -0.527 6.527 11 O -0.348 6.348 12 C 0.071 3.929 13 C 0.434 3.566 14 O -0.620 6.620 15 N -0.557 5.557 16 C -0.340 4.340 17 H 0.083 0.917 18 C -0.008 4.008 19 N -0.914 5.914 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.269 1.269 23 H -0.272 1.272 24 C -0.158 4.158 25 C -0.098 4.098 26 S 0.208 5.792 27 H 0.084 0.916 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.166 0.834 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.400 0.600 38 H 0.281 0.719 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.211 -28.834 -0.055 32.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.325 4.325 3 C -0.138 4.138 4 C -0.236 4.236 5 C 0.302 3.698 6 O -0.359 6.359 7 C -0.180 4.180 8 C -0.136 4.136 9 C 0.308 3.692 10 O -0.417 6.417 11 O -0.263 6.263 12 C -0.006 4.006 13 C 0.221 3.779 14 O -0.507 6.507 15 N -0.195 5.195 16 C -0.469 4.469 17 H 0.101 0.899 18 C -0.209 4.209 19 N -0.554 5.554 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.193 1.193 23 H -0.197 1.197 24 C -0.278 4.278 25 C -0.156 4.156 26 S 0.475 5.525 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.183 0.817 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.235 0.765 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.630 -30.516 -0.048 33.842 hybrid contribution 0.509 2.664 0.001 2.712 sum -14.121 -27.852 -0.047 31.227 Atomic orbital electron populations 1.20465 0.85631 1.04317 1.03843 1.24665 1.01747 0.95785 1.10320 1.21342 0.90061 1.00708 1.01677 1.20700 0.95259 0.93369 1.14226 1.21798 0.87328 0.90504 0.70180 1.90522 1.21650 1.85134 1.38616 1.21790 0.97797 0.90963 1.07444 1.21194 1.00459 0.84102 1.07847 1.24270 0.83551 0.89932 0.71445 1.90634 1.20333 1.83972 1.46764 1.86569 1.40071 1.16222 1.83445 1.22523 0.94706 0.77869 1.05481 1.20186 0.90269 0.83357 0.84102 1.90531 1.27187 1.76157 1.56801 1.41739 1.09891 1.03837 1.64002 1.19724 0.88327 0.88063 1.50755 0.89866 1.26125 1.01017 0.98153 0.95619 1.69670 1.22151 1.14499 1.49099 0.84849 0.77143 0.77069 0.78799 1.19439 1.19321 1.19659 1.25090 1.03020 0.97501 1.02179 1.20655 0.89740 1.01346 1.03840 1.82925 0.92159 1.08091 1.69286 0.89714 0.90271 0.89422 0.81658 0.86206 0.86185 0.86397 0.86401 0.87383 0.87397 0.76502 0.90932 0.89761 0.89589 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.34 71.24 0.74 0.20 16 2 C -0.21 -2.43 6.43 24.52 0.16 -2.27 16 3 C -0.11 -1.52 9.72 22.74 0.22 -1.30 16 4 C -0.22 -3.87 5.97 -19.94 -0.12 -3.99 16 5 C 0.42 8.30 7.11 27.80 0.20 8.49 16 6 O -0.48 -11.77 13.71 -3.25 -0.04 -11.81 16 7 C -0.14 -2.49 4.11 29.85 0.12 -2.36 16 8 C -0.10 -2.17 5.10 29.85 0.15 -2.02 16 9 C 0.46 13.60 7.96 71.23 0.57 14.17 16 10 O -0.53 -16.36 15.73 21.97 0.35 -16.01 16 11 O -0.35 -12.88 9.76 -45.08 -0.44 -13.32 16 12 C 0.07 2.68 5.94 71.24 0.42 3.11 16 13 C 0.43 21.48 7.86 87.66 0.69 22.17 16 14 O -0.62 -35.97 16.08 15.73 0.25 -35.72 16 15 N -0.56 -28.79 5.29 -306.98 -1.62 -30.41 16 16 C -0.34 -19.23 9.68 84.04 0.81 -18.41 16 17 H 0.08 5.01 7.16 -2.91 -0.02 4.99 16 18 C -0.01 -0.44 5.50 84.93 0.47 0.03 16 19 N -0.91 -48.54 13.05 21.66 0.28 -48.26 16 20 Si 1.00 42.25 29.55 68.60 2.03 44.27 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 C -0.16 -2.58 6.36 25.28 0.16 -2.42 16 25 C -0.10 -1.48 9.60 71.23 0.68 -0.79 16 26 S 0.21 2.43 22.94 -56.49 -1.30 1.13 16 27 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.17 1.73 7.76 -2.91 -0.02 1.70 16 31 H 0.12 1.85 8.10 -2.39 -0.02 1.83 16 32 H 0.12 1.86 8.10 -2.39 -0.02 1.84 16 33 H 0.12 2.51 8.10 -2.39 -0.02 2.49 16 34 H 0.12 2.51 8.10 -2.39 -0.02 2.49 16 35 H 0.11 3.60 8.13 -2.39 -0.02 3.58 16 36 H 0.11 3.60 8.13 -2.39 -0.02 3.58 16 37 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 38 H 0.28 13.89 8.31 -92.71 -0.77 13.12 16 39 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.08 1.61 5.96 -2.39 -0.01 1.60 16 Total: -1.00 -72.74 375.57 5.13 -67.61 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.35 Total: 27.92 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 5.27 Total: 14.60 kcal Atomic # 7 Polarization: -77.32 SS G_CDS: -1.34 Total: -78.66 kcal Atomic # 8 Polarization: -76.98 SS G_CDS: 0.11 Total: -76.87 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 2.03 Total: 44.27 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.30 Total: 1.13 kcal Total: -72.74 5.13 -67.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731233958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.648 kcal (2) G-P(sol) polarization free energy of solvation -72.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds