Wall clock time and date at job start Tue Mar 31 2020 22:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.32630 * 124.64891 * 2 1 4 4 C 1.44634 * 113.10617 * 179.97438 * 3 2 1 5 5 C 1.46354 * 123.53107 * 179.97438 * 4 3 2 6 6 O 1.21361 * 120.00266 * 180.02562 * 5 4 3 7 7 C 1.50707 * 120.00047 * 0.02562 * 5 4 3 8 8 C 1.52998 * 109.46987 * 174.55711 * 7 5 4 9 9 C 1.50701 * 109.47088 * 182.42247 * 8 7 5 10 10 O 1.21294 * 120.00068 * 5.13151 * 9 8 7 11 11 N 1.34776 * 120.00365 * 185.12481 * 9 8 7 12 12 C 1.37104 * 119.99776 * 354.67415 * 11 9 8 13 13 H 1.08001 * 119.99620 * 323.42745 * 12 11 9 14 14 C 1.38943 * 119.99951 * 143.43381 * 12 11 9 15 15 N 1.31414 * 120.00101 * 159.94236 * 14 12 11 16 16 Si 1.86804 * 120.00226 * 339.93261 * 14 12 11 17 17 H 1.48504 * 109.46696 * 95.41625 * 16 14 12 18 18 H 1.48490 * 109.47505 * 215.41632 * 16 14 12 19 19 H 1.48497 * 109.46897 * 335.42191 * 16 14 12 20 20 C 1.46498 * 120.00391 * 174.66784 * 11 9 8 21 21 C 1.50698 * 109.47107 * 90.00356 * 20 11 9 22 22 O 1.20825 * 119.99951 * 359.97438 * 21 20 11 23 23 O 1.34228 * 120.00160 * 180.02562 * 21 20 11 24 24 C 1.36488 * 112.93341 * 0.26131 * 4 3 2 25 25 C 1.50704 * 124.61099 * 179.72792 * 24 4 3 26 26 S 1.70436 * 110.76538 * 359.59533 * 24 4 3 27 27 H 1.08999 * 109.46984 * 90.00479 * 1 2 3 28 28 H 1.09000 * 109.46858 * 210.00659 * 1 2 3 29 29 H 1.08998 * 109.47101 * 330.00026 * 1 2 3 30 30 H 1.08001 * 123.44669 * 359.93538 * 3 2 1 31 31 H 1.08997 * 109.46987 * 294.55456 * 7 5 4 32 32 H 1.08994 * 109.47033 * 54.55670 * 7 5 4 33 33 H 1.09003 * 109.47348 * 302.42077 * 8 7 5 34 34 H 1.08996 * 109.47337 * 62.42172 * 8 7 5 35 35 H 0.96995 * 120.00072 * 179.97438 * 15 14 12 36 36 H 1.08994 * 109.47138 * 210.00498 * 20 11 9 37 37 H 1.09004 * 109.46668 * 330.00556 * 20 11 9 38 38 H 0.96699 * 117.00083 * 180.02562 * 23 21 20 39 39 H 1.09001 * 109.46587 * 90.00661 * 25 24 4 40 40 H 1.08995 * 109.46646 * 209.99638 * 25 24 4 41 41 H 1.08995 * 109.47875 * 330.00335 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2611 1.0911 0.0000 4 6 3.6782 0.8017 0.0006 5 6 4.7144 1.8352 0.0002 6 8 5.8863 1.5197 0.0002 7 6 4.3263 3.2914 -0.0004 8 6 5.5825 4.1541 0.1361 9 6 5.1895 5.6078 0.1954 10 8 4.0175 5.9184 0.2284 11 7 6.1404 6.5628 0.2119 12 6 7.4636 6.2114 0.2850 13 1 7.7650 5.3639 0.8828 14 6 8.4168 6.9457 -0.4098 15 7 9.6806 6.8845 -0.0548 16 14 7.9020 8.0199 -1.8488 17 1 7.6989 9.4137 -1.3782 18 1 8.9629 7.9978 -2.8875 19 1 6.6348 7.5022 -2.4244 20 6 5.7601 7.9763 0.1515 21 6 5.5626 8.5035 1.5494 22 8 5.7225 7.7733 2.4986 23 8 5.2079 9.7840 1.7399 24 6 3.9478 -0.5363 -0.0047 25 6 5.3327 -1.1305 -0.0113 26 16 2.5049 -1.4434 0.0009 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.8582 2.0931 -0.0010 31 1 3.8200 3.5321 -0.9351 32 1 3.6569 3.4893 0.8368 33 1 6.1118 3.8833 1.0497 34 1 6.2323 3.9882 -0.7231 35 1 10.3461 7.3968 -0.5400 36 1 6.5485 8.5438 -0.3428 37 1 4.8316 8.0790 -0.4102 38 1 5.0933 10.0763 2.6545 39 1 5.6700 -1.2772 1.0148 40 1 5.3139 -2.0899 -0.5282 41 1 6.0159 -0.4542 -0.5251 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738320980.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:42:38 Heat of formation + Delta-G solvation = -149.286249 kcal Electronic energy + Delta-G solvation = -26749.905367 eV Core-core repulsion = 22721.149070 eV Total energy + Delta-G solvation = -4028.756298 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.63959 -40.95842 -40.16596 -38.09738 -37.26900 -36.73166 -34.19551 -34.03884 -33.74867 -30.77862 -29.98976 -27.71476 -26.79589 -25.64145 -23.99717 -22.85199 -21.35457 -20.90958 -19.55138 -19.27939 -19.02068 -18.39415 -17.92206 -17.47209 -17.04927 -16.83294 -16.81318 -16.56421 -15.83095 -15.72752 -15.23784 -14.97606 -14.75593 -14.61274 -14.31321 -14.22412 -14.13972 -13.90108 -13.83921 -13.56663 -13.50721 -13.04473 -12.87810 -12.71802 -12.62119 -12.55780 -12.47242 -12.31888 -12.10548 -11.93638 -11.84388 -11.72178 -11.18744 -10.65127 -10.53243 -9.98298 -9.55899 -9.39296 -8.55765 -6.22989 -0.35181 0.50640 0.74825 0.90923 1.14013 1.18071 1.31271 1.43662 1.59727 2.00879 2.03231 2.13311 2.54310 2.93154 3.23291 3.68810 3.83482 3.86923 3.99573 4.07313 4.19295 4.22713 4.26968 4.39523 4.45191 4.60119 4.60700 4.68452 4.75590 4.80334 4.93932 4.96618 5.07595 5.11954 5.19251 5.24133 5.25586 5.43634 5.56509 5.98180 6.11818 6.57310 6.84217 6.98159 7.22096 7.57848 8.58956 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002857 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.583513 B = 9796.625063 C =10833.455957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.207 4.207 3 C -0.113 4.113 4 C -0.219 4.219 5 C 0.416 3.584 6 O -0.483 6.483 7 C -0.134 4.134 8 C -0.100 4.100 9 C 0.489 3.511 10 O -0.602 6.602 11 N -0.459 5.459 12 C -0.345 4.345 13 H 0.073 0.927 14 C 0.022 3.978 15 N -0.895 5.895 16 Si 0.923 3.077 17 H -0.246 1.246 18 H -0.277 1.277 19 H -0.247 1.247 20 C 0.097 3.903 21 C 0.470 3.530 22 O -0.537 6.537 23 O -0.508 6.508 24 C -0.160 4.160 25 C -0.097 4.097 26 S 0.221 5.779 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.161 0.839 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.283 0.717 36 H 0.107 0.893 37 H 0.134 0.866 38 H 0.425 0.575 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.665 -11.120 -2.914 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.323 4.323 3 C -0.140 4.140 4 C -0.234 4.234 5 C 0.295 3.705 6 O -0.362 6.362 7 C -0.172 4.172 8 C -0.140 4.140 9 C 0.281 3.719 10 O -0.487 6.487 11 N -0.181 5.181 12 C -0.472 4.472 13 H 0.091 0.909 14 C -0.183 4.183 15 N -0.531 5.531 16 Si 0.746 3.254 17 H -0.172 1.172 18 H -0.203 1.203 19 H -0.170 1.170 20 C -0.027 4.027 21 C 0.312 3.688 22 O -0.426 6.426 23 O -0.321 6.321 24 C -0.280 4.280 25 C -0.155 4.155 26 S 0.487 5.513 27 H 0.105 0.895 28 H 0.100 0.900 29 H 0.104 0.896 30 H 0.178 0.822 31 H 0.133 0.867 32 H 0.124 0.876 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.151 0.849 38 H 0.286 0.714 39 H 0.101 0.899 40 H 0.109 0.891 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.669 -12.935 -3.044 21.318 hybrid contribution 1.087 2.430 0.435 2.698 sum -15.581 -10.505 -2.610 18.972 Atomic orbital electron populations 1.20469 0.85278 1.04343 1.03966 1.24678 1.01869 0.95662 1.10119 1.21304 0.90005 1.00746 1.01939 1.20712 0.95268 0.93386 1.14064 1.22018 0.87486 0.90846 0.70108 1.90505 1.22013 1.85140 1.38575 1.21687 0.98242 0.91153 1.06101 1.21059 0.98676 0.89972 1.04294 1.20878 0.84542 0.88951 0.77556 1.90514 1.18537 1.84116 1.55567 1.43468 1.06571 1.02381 1.65656 1.18872 0.80349 1.17779 1.30235 0.90914 1.26057 0.94645 0.98518 0.99058 1.69835 1.02786 1.41148 1.39292 0.86191 0.79814 0.79629 0.79805 1.17182 1.20327 1.17016 1.21495 1.04429 0.85388 0.91437 1.24240 0.71483 0.79876 0.93216 1.90663 1.47907 1.59391 1.44651 1.84482 1.80781 1.27870 1.38953 1.25071 1.03276 0.97375 1.02274 1.20643 0.89810 1.01355 1.03740 1.82688 0.91535 1.07631 1.69401 0.89475 0.89958 0.89601 0.82167 0.86722 0.87563 0.90686 0.89097 0.90712 0.87602 0.84856 0.71357 0.89948 0.89090 0.90228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.34 71.24 0.74 -0.15 16 2 C -0.21 -3.62 6.43 24.52 0.16 -3.46 16 3 C -0.11 -2.45 9.72 22.74 0.22 -2.23 16 4 C -0.22 -5.90 5.97 -19.94 -0.12 -6.02 16 5 C 0.42 13.50 7.10 27.80 0.20 13.70 16 6 O -0.48 -18.38 13.72 -3.28 -0.05 -18.42 16 7 C -0.13 -4.41 4.17 29.85 0.12 -4.29 16 8 C -0.10 -4.15 3.70 29.85 0.11 -4.04 16 9 C 0.49 22.66 7.61 87.66 0.67 23.32 16 10 O -0.60 -28.09 15.57 -3.07 -0.05 -28.14 16 11 N -0.46 -22.37 1.69 -639.61 -1.08 -23.45 16 12 C -0.34 -18.71 9.03 84.04 0.76 -17.95 16 13 H 0.07 4.38 7.36 -2.91 -0.02 4.36 16 14 C 0.02 1.15 5.35 84.92 0.45 1.61 16 15 N -0.89 -50.36 13.96 21.66 0.30 -50.05 16 16 Si 0.92 38.86 24.83 68.60 1.70 40.57 16 17 H -0.25 -9.41 6.71 99.48 0.67 -8.74 16 18 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 19 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 20 C 0.10 4.14 4.75 85.63 0.41 4.55 16 21 C 0.47 19.66 8.40 71.24 0.60 20.26 16 22 O -0.54 -26.58 17.19 21.97 0.38 -26.20 16 23 O -0.51 -15.63 13.42 -51.40 -0.69 -16.32 16 24 C -0.16 -3.81 6.36 25.28 0.16 -3.65 16 25 C -0.10 -2.20 9.60 71.24 0.68 -1.52 16 26 S 0.22 3.73 22.94 -56.49 -1.30 2.44 16 27 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.16 3.13 7.76 -2.91 -0.02 3.11 16 31 H 0.11 3.43 8.14 -2.39 -0.02 3.41 16 32 H 0.11 3.38 7.97 -2.39 -0.02 3.36 16 33 H 0.07 3.34 7.74 -2.39 -0.02 3.32 16 34 H 0.09 3.87 8.00 -2.39 -0.02 3.85 16 35 H 0.28 14.62 8.31 -92.71 -0.77 13.85 16 36 H 0.11 4.40 2.96 -2.39 -0.01 4.40 16 37 H 0.13 5.06 7.50 -2.39 -0.02 5.04 16 38 H 0.42 8.77 9.10 -74.06 -0.67 8.10 16 39 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 2.22 5.96 -2.39 -0.01 2.21 16 Total: -1.00 -72.47 364.28 4.76 -67.71 By element: Atomic # 1 Polarization: 31.36 SS G_CDS: 0.38 Total: 31.74 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 5.16 Total: 20.13 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -0.78 Total: -73.50 kcal Atomic # 8 Polarization: -88.68 SS G_CDS: -0.41 Total: -89.08 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 1.70 Total: 40.57 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.30 Total: 2.44 kcal Total: -72.47 4.76 -67.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738320980.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.574 kcal (2) G-P(sol) polarization free energy of solvation -72.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds