Wall clock time and date at job start Tue Mar 31 2020 22:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00372 * 2 1 4 4 H 1.48492 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47338 * 300.00351 * 3 2 1 6 6 H 1.48510 * 109.46694 * 59.99924 * 3 2 1 7 7 C 1.38809 * 119.99493 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99965 * 154.81604 * 7 2 1 9 9 N 1.36936 * 119.99991 * 334.80524 * 7 2 1 10 10 C 1.46503 * 119.99771 * 129.84373 * 9 7 2 11 11 C 1.54964 * 110.92114 * 307.94237 * 10 9 7 12 12 C 1.54270 * 104.16167 * 156.29552 * 11 10 9 13 13 C 1.53881 * 106.64015 * 336.44428 * 12 11 10 14 14 C 1.54274 * 106.59616 * 359.97438 * 13 12 11 15 15 S 1.65597 * 120.00409 * 309.84411 * 9 7 2 16 16 O 1.42094 * 106.40374 * 23.53885 * 15 9 7 17 17 O 1.42103 * 106.40396 * 156.45826 * 15 9 7 18 18 C 1.76202 * 107.21872 * 269.99804 * 15 9 7 19 19 C 1.38368 * 119.84663 * 269.72702 * 18 15 9 20 20 C 1.37952 * 120.14736 * 179.72498 * 19 18 15 21 21 C 1.39629 * 119.84232 * 0.56833 * 20 19 18 22 22 C 1.47731 * 120.14471 * 179.68469 * 21 20 19 23 23 O 1.21465 * 119.99637 * 180.02562 * 22 21 20 24 24 O 1.34711 * 120.00200 * 0.02562 * 22 21 20 25 25 C 1.39627 * 119.70644 * 359.70511 * 21 20 19 26 26 C 1.37945 * 119.84520 * 359.97438 * 25 21 20 27 27 H 0.96999 * 119.99285 * 359.97438 * 1 2 3 28 28 H 1.09000 * 110.67633 * 184.63607 * 10 9 7 29 29 H 1.09003 * 110.47854 * 37.64521 * 11 10 9 30 30 H 1.08998 * 110.53029 * 274.97362 * 11 10 9 31 31 H 1.08998 * 110.03564 * 217.13755 * 12 11 10 32 32 H 1.08997 * 110.03499 * 95.75208 * 12 11 10 33 33 H 1.09006 * 110.03137 * 119.25586 * 13 12 11 34 34 H 1.08995 * 110.03457 * 240.64521 * 13 12 11 35 35 H 1.08995 * 110.48431 * 142.28309 * 14 13 12 36 36 H 1.08993 * 110.48570 * 264.80089 * 14 13 12 37 37 H 1.08003 * 119.92831 * 359.97438 * 19 18 15 38 38 H 1.07995 * 120.07817 * 180.27679 * 20 19 18 39 39 H 0.96695 * 117.00080 * 180.02562 * 24 22 21 40 40 H 1.08001 * 120.07690 * 179.97438 * 25 21 20 41 41 H 1.07995 * 119.92484 * 180.02562 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0132 -1.2465 -0.3985 9 7 1.4231 -2.3319 0.5038 10 6 1.4204 -3.5688 -0.2812 11 6 0.8665 -3.3183 -1.7067 12 6 1.4718 -4.4577 -2.5524 13 6 2.7434 -4.9220 -1.8207 14 6 2.8676 -4.0481 -0.5554 15 16 0.7162 -2.2999 2.0010 16 8 0.3822 -0.9429 2.2581 17 8 -0.2391 -3.3517 2.0162 18 6 1.9569 -2.7376 3.1730 19 6 2.1397 -4.0648 3.5192 20 6 3.1130 -4.4151 4.4318 21 6 3.9066 -3.4256 5.0155 22 6 4.9462 -3.7925 5.9989 23 8 5.6347 -2.9294 6.5053 24 8 5.1305 -5.0842 6.3340 25 6 3.7130 -2.0877 4.6659 26 6 2.7405 -1.7521 3.7468 27 1 -0.4849 0.8401 0.0004 28 1 0.8459 -4.3446 0.2249 29 1 1.1977 -2.3491 -2.0796 30 1 -0.2219 -3.3777 -1.7097 31 1 1.7262 -4.0903 -3.5465 32 1 0.7633 -5.2824 -2.6295 33 1 2.6515 -5.9717 -1.5419 34 1 3.6147 -4.7805 -2.4600 35 1 3.2386 -4.6394 0.2816 36 1 3.5242 -3.1983 -0.7417 37 1 1.5216 -4.8286 3.0708 38 1 3.2576 -5.4517 4.6978 39 1 5.8224 -5.2752 6.9819 40 1 4.3231 -1.3174 5.1139 41 1 2.5899 -0.7178 3.4752 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738425273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:20 Heat of formation + Delta-G solvation = -157.176510 kcal Electronic energy + Delta-G solvation = -28291.595109 eV Core-core repulsion = 24262.496664 eV Total energy + Delta-G solvation = -4029.098445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.51716 -39.63979 -39.28998 -37.66151 -37.19460 -36.16791 -35.75956 -33.24029 -32.62619 -32.15027 -29.33538 -28.38108 -26.17481 -26.00924 -23.86985 -22.44833 -21.37108 -20.87637 -20.60647 -19.39390 -19.20304 -18.50977 -17.73411 -17.60066 -16.99588 -16.76550 -16.44638 -16.10931 -15.90582 -15.76221 -15.21360 -14.85293 -14.60180 -14.33396 -14.11040 -14.03056 -13.83278 -13.71551 -13.52611 -13.17874 -12.88731 -12.68321 -12.48643 -12.43023 -12.28835 -12.20292 -12.01579 -11.95937 -11.92878 -11.77085 -11.72190 -11.41011 -11.17236 -11.03673 -10.59487 -10.45335 -10.14648 -9.43190 -8.43298 -6.06650 -0.76381 0.07672 0.21972 1.26546 1.50095 1.56241 1.64844 1.89373 2.34074 2.47241 2.88515 3.04148 3.45624 3.58048 3.83647 3.86319 3.98557 4.02058 4.14273 4.20454 4.28162 4.47542 4.51532 4.59423 4.80080 4.84885 4.87226 4.92541 4.96089 5.03854 5.08310 5.16607 5.19273 5.27632 5.31215 5.42365 5.44943 5.50205 5.60680 5.68079 5.71830 5.97861 6.33838 6.86580 7.03554 7.47630 8.61955 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.004946 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.745609 B = 5659.952893 C = 6796.408427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.025 3.975 3 Si 0.961 3.039 4 H -0.243 1.243 5 H -0.270 1.270 6 H -0.289 1.289 7 C -0.268 4.268 8 H 0.098 0.902 9 N -0.812 5.812 10 C 0.140 3.860 11 C -0.114 4.114 12 C -0.116 4.116 13 C -0.113 4.113 14 C -0.132 4.132 15 S 2.542 3.458 16 O -0.984 6.984 17 O -1.037 7.037 18 C -0.640 4.640 19 C -0.060 4.060 20 C -0.071 4.071 21 C -0.108 4.108 22 C 0.541 3.459 23 O -0.539 6.539 24 O -0.496 6.496 25 C -0.079 4.079 26 C -0.051 4.051 27 H 0.277 0.723 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.145 0.855 38 H 0.174 0.826 39 H 0.437 0.563 40 H 0.151 0.849 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.860 -9.997 2.139 14.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.191 4.191 3 Si 0.784 3.216 4 H -0.165 1.165 5 H -0.195 1.195 6 H -0.216 1.216 7 C -0.416 4.416 8 H 0.115 0.885 9 N -0.634 5.634 10 C 0.032 3.968 11 C -0.154 4.154 12 C -0.154 4.154 13 C -0.151 4.151 14 C -0.171 4.171 15 S 2.646 3.354 16 O -0.972 6.972 17 O -1.027 7.027 18 C -0.720 4.720 19 C -0.079 4.079 20 C -0.089 4.089 21 C -0.109 4.109 22 C 0.386 3.614 23 O -0.431 6.431 24 O -0.310 6.310 25 C -0.098 4.098 26 C -0.070 4.070 27 H 0.087 0.913 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.163 0.837 38 H 0.192 0.808 39 H 0.300 0.700 40 H 0.168 0.832 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.645 -9.604 2.477 13.157 hybrid contribution 0.666 0.961 1.049 1.571 sum 9.311 -8.643 3.527 13.185 Atomic orbital electron populations 1.69976 1.08797 1.29924 1.36101 1.26501 0.95236 1.03658 0.93692 0.85370 0.80302 0.78233 0.77693 1.16531 1.19544 1.21558 1.19284 0.99142 0.85927 1.37290 0.88457 1.52740 1.73902 1.14544 1.22255 1.22007 0.96977 0.85239 0.92529 1.22473 0.98610 0.99896 0.94422 1.22083 0.97307 0.97294 0.98748 1.22037 0.97947 0.99319 0.95757 1.22699 0.96389 0.99667 0.98361 1.10960 0.77840 0.72357 0.74219 1.93365 1.83089 1.35516 1.85267 1.93257 1.62718 1.59006 1.87687 1.32570 1.20767 1.01457 1.17233 1.21091 0.96594 0.94286 0.95907 1.21800 0.92533 1.00686 0.93906 1.19381 0.97754 0.94718 0.99038 1.20602 0.80989 0.80688 0.79130 1.90880 1.47162 1.51472 1.53585 1.84509 1.59106 1.25983 1.61407 1.21487 0.96719 0.95716 0.95863 1.20891 0.92894 0.99298 0.93883 0.91341 0.90623 0.91392 0.94215 0.90906 0.91225 0.90631 0.90564 0.91717 0.91198 0.83691 0.80845 0.70029 0.83160 0.84776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.92 11.74 21.65 0.25 -43.67 16 2 C 0.02 1.21 3.99 84.86 0.34 1.55 16 3 Si 0.96 39.15 29.62 68.60 2.03 41.18 16 4 H -0.24 -8.96 7.11 99.48 0.71 -8.25 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.27 -12.44 7.46 84.03 0.63 -11.81 16 8 H 0.10 4.17 6.95 -2.91 -0.02 4.15 16 9 N -0.81 -36.98 2.75 -316.71 -0.87 -37.85 16 10 C 0.14 5.43 3.31 46.31 0.15 5.58 16 11 C -0.11 -4.22 6.35 31.70 0.20 -4.02 16 12 C -0.12 -3.11 6.80 31.32 0.21 -2.89 16 13 C -0.11 -2.73 6.80 31.32 0.21 -2.52 16 14 C -0.13 -4.06 6.40 31.67 0.20 -3.86 16 15 S 2.54 124.61 5.45 -56.49 -0.31 124.30 16 16 O -0.98 -54.82 13.47 -128.00 -1.72 -56.55 16 17 O -1.04 -54.33 15.83 -128.00 -2.03 -56.35 16 18 C -0.64 -25.89 5.98 22.33 0.13 -25.76 16 19 C -0.06 -2.02 9.50 22.23 0.21 -1.81 16 20 C -0.07 -1.93 9.62 22.54 0.22 -1.71 16 21 C -0.11 -3.08 5.87 -20.10 -0.12 -3.20 16 22 C 0.54 13.32 8.27 70.33 0.58 13.90 16 23 O -0.54 -16.02 17.13 19.95 0.34 -15.68 16 24 O -0.50 -7.89 12.68 -56.20 -0.71 -8.60 16 25 C -0.08 -2.54 9.60 22.54 0.22 -2.33 16 26 C -0.05 -1.92 9.50 22.23 0.21 -1.71 16 27 H 0.28 14.37 8.31 -92.71 -0.77 13.60 16 28 H 0.08 3.01 6.95 -2.39 -0.02 2.99 16 29 H 0.07 2.76 7.06 -2.39 -0.02 2.75 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.27 6.75 -2.39 -0.02 2.25 16 37 H 0.15 4.62 7.60 -2.91 -0.02 4.60 16 38 H 0.17 3.41 7.61 -2.91 -0.02 3.38 16 39 H 0.44 2.52 9.11 -74.06 -0.67 1.85 16 40 H 0.15 4.35 7.65 -2.91 -0.02 4.32 16 41 H 0.13 5.27 7.60 -2.91 -0.02 5.25 16 Total: -1.00 -69.47 353.89 0.79 -68.68 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.40 Total: 25.13 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 3.40 Total: -40.59 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -0.62 Total: -81.52 kcal Atomic # 8 Polarization: -133.06 SS G_CDS: -4.12 Total: -137.18 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Atomic # 16 Polarization: 124.61 SS G_CDS: -0.31 Total: 124.30 kcal Total: -69.47 0.79 -68.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738425273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.497 kcal (2) G-P(sol) polarization free energy of solvation -69.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds