Wall clock time and date at job start Tue Mar 31 2020 21:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86792 * 120.00297 * 2 1 4 4 H 1.48495 * 109.47675 * 240.00278 * 3 2 1 5 5 H 1.48506 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47134 * 120.00271 * 3 2 1 7 7 C 1.38950 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00184 * 171.26072 * 7 2 1 9 9 N 1.37099 * 120.00164 * 351.25291 * 7 2 1 10 10 C 1.46507 * 119.99726 * 23.00682 * 9 7 2 11 11 C 1.50701 * 109.46759 * 269.99544 * 10 9 7 12 12 O 1.20835 * 120.00056 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99969 * 180.02562 * 11 10 9 14 14 C 1.34772 * 120.00257 * 203.00065 * 9 7 2 15 15 O 1.21299 * 119.99989 * 185.02300 * 14 9 7 16 16 C 1.50703 * 120.00287 * 5.01912 * 14 9 7 17 17 C 1.50699 * 109.47223 * 174.90394 * 16 14 9 18 18 C 1.38131 * 119.98732 * 264.99908 * 17 16 14 19 19 C 1.38429 * 120.00512 * 179.97438 * 18 17 16 20 20 F 1.35101 * 119.98467 * 180.02562 * 19 18 17 21 21 C 1.38449 * 120.03228 * 0.31287 * 19 18 17 22 22 C 1.38220 * 120.08808 * 359.50617 * 21 19 18 23 23 C 1.38617 * 119.93679 * 0.42185 * 22 21 19 24 24 O 1.36029 * 120.53274 * 179.97438 * 23 22 21 25 25 C 1.43046 * 116.84910 * 343.42066 * 24 23 22 26 26 O 1.43267 * 108.60300 * 47.46148 * 25 24 23 27 27 C 1.43080 * 113.02501 * 294.51308 * 26 25 24 28 28 H 0.96996 * 119.99867 * 5.00694 * 1 2 3 29 29 H 1.08992 * 109.47098 * 29.99269 * 10 9 7 30 30 H 1.08998 * 109.46862 * 150.00171 * 10 9 7 31 31 H 0.96701 * 117.00241 * 180.02562 * 13 11 10 32 32 H 1.08992 * 109.46601 * 54.89951 * 16 14 9 33 33 H 1.09005 * 109.46914 * 294.90615 * 16 14 9 34 34 H 1.08006 * 119.99674 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.95357 * 179.73095 * 21 19 18 36 36 H 1.09002 * 109.61648 * 167.19886 * 25 24 23 37 37 H 1.09001 * 109.61092 * 287.55016 * 25 24 23 38 38 H 1.09008 * 109.49325 * 168.55026 * 27 26 25 39 39 H 1.08999 * 109.50409 * 288.61327 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0794 -1.2088 -0.1426 9 7 1.3353 -2.3838 0.1795 10 6 -0.0954 -2.4647 -0.1254 11 6 -0.8918 -2.1144 1.1051 12 8 -0.3226 -1.8263 2.1314 13 8 -2.2333 -2.1225 1.0611 14 6 1.9893 -3.4699 0.6368 15 8 1.4165 -4.5367 0.7098 16 6 3.4322 -3.3591 1.0574 17 6 3.8874 -4.6715 1.6417 18 6 3.8474 -4.8698 3.0081 19 6 4.2649 -6.0754 3.5452 20 9 4.2251 -6.2691 4.8816 21 6 4.7288 -7.0807 2.7139 22 6 4.7664 -6.8864 1.3459 23 6 4.3473 -5.6802 0.8067 24 8 4.3796 -5.4758 -0.5377 25 6 5.1805 -6.3758 -1.3089 26 8 4.8840 -7.7165 -0.9001 27 6 5.2721 -7.9887 0.4499 28 1 -0.4850 0.8368 -0.0733 29 1 -0.3365 -1.7650 -0.9255 30 1 -0.3427 -3.4780 -0.4419 31 1 -2.7007 -1.8905 1.8753 32 1 3.5330 -2.5735 1.8061 33 1 4.0457 -3.1152 0.1901 34 1 3.4903 -4.0841 3.6575 35 1 5.0583 -8.0192 3.1347 36 1 4.9491 -6.2564 -2.3674 37 1 6.2361 -6.1636 -1.1390 38 1 4.8445 -8.9400 0.7666 39 1 6.3591 -8.0395 0.5129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739079450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:32 Heat of formation + Delta-G solvation = -211.236023 kcal Electronic energy + Delta-G solvation = -30241.874598 eV Core-core repulsion = 25644.218781 eV Total energy + Delta-G solvation = -4597.655818 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.68600 -40.94582 -39.30600 -38.32037 -37.48435 -36.38795 -35.16022 -34.45364 -32.79263 -31.55616 -30.67682 -28.58469 -26.74254 -26.54225 -25.78586 -24.66106 -22.01157 -21.20555 -20.54066 -19.23781 -18.53870 -17.51224 -17.30260 -16.92753 -16.82453 -16.12901 -16.04417 -15.56527 -15.49655 -15.26201 -15.09538 -14.45734 -14.37007 -14.31475 -14.22452 -14.06427 -13.85160 -13.24434 -13.00004 -12.77085 -12.60377 -12.05515 -11.96386 -11.79066 -11.60719 -11.24302 -11.08297 -11.00467 -10.92438 -10.74675 -10.60804 -10.49643 -10.25402 -10.22541 -9.53987 -9.04750 -8.89770 -8.49771 -7.96777 -7.93035 -6.46587 -4.09467 1.17878 1.32295 3.07736 3.16315 3.17366 3.17956 3.45543 3.58593 3.65713 3.79609 4.02910 4.21252 4.32736 4.59073 4.62662 4.67269 4.86033 5.04193 5.06871 5.12507 5.13570 5.31015 5.36369 5.66449 5.70846 5.95588 6.06717 6.12818 6.18916 6.33692 6.46683 6.48970 6.63227 6.72091 6.83803 6.92210 7.28364 7.39558 7.59863 7.68943 8.23414 8.96042 9.23717 9.35607 9.75740 10.55162 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.003891 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.115966 B = 7194.834014 C = 7636.172263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.042 3.958 3 Si 0.933 3.067 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.326 4.326 8 H 0.102 0.898 9 N -0.435 5.435 10 C 0.156 3.844 11 C 0.504 3.496 12 O -0.525 6.525 13 O -0.534 6.534 14 C 0.481 3.519 15 O -0.593 6.593 16 C -0.079 4.079 17 C -0.042 4.042 18 C -0.106 4.106 19 C 0.068 3.932 20 F -0.143 7.143 21 C -0.119 4.119 22 C -0.183 4.183 23 C 0.143 3.857 24 O -0.313 6.313 25 C 0.221 3.779 26 O -0.386 6.386 27 C 0.107 3.893 28 H 0.274 0.726 29 H 0.138 0.862 30 H 0.076 0.924 31 H 0.388 0.612 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.141 0.859 37 H 0.061 0.939 38 H 0.113 0.887 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.624 -8.826 -0.498 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.161 4.161 3 Si 0.760 3.240 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.454 4.454 8 H 0.120 0.880 9 N -0.155 5.155 10 C 0.030 3.970 11 C 0.346 3.654 12 O -0.412 6.412 13 O -0.344 6.344 14 C 0.270 3.730 15 O -0.478 6.478 16 C -0.119 4.119 17 C -0.043 4.043 18 C -0.125 4.125 19 C 0.048 3.952 20 F -0.122 7.122 21 C -0.138 4.138 22 C -0.184 4.184 23 C 0.098 3.902 24 O -0.229 6.229 25 C 0.108 3.892 26 O -0.305 6.305 27 C 0.031 3.969 28 H 0.085 0.915 29 H 0.155 0.845 30 H 0.094 0.906 31 H 0.244 0.756 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.161 0.839 35 H 0.154 0.846 36 H 0.159 0.841 37 H 0.078 0.922 38 H 0.131 0.869 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.383 -9.205 -0.703 13.163 hybrid contribution 0.155 1.277 1.059 1.666 sum 9.538 -7.928 0.356 12.408 Atomic orbital electron populations 1.69593 1.06261 1.28238 1.48534 1.25300 0.95571 0.99951 0.95315 0.85895 0.78896 0.80333 0.78910 1.19832 1.20864 1.19720 1.19627 0.93660 0.82543 1.49527 0.88010 1.43271 1.06076 1.09973 1.56158 1.20575 0.80942 1.01515 0.93949 1.23754 0.79331 0.71699 0.90606 1.90537 1.71046 1.45799 1.33862 1.84536 1.22770 1.83503 1.43572 1.19919 0.88386 0.84310 0.80345 1.90571 1.69799 1.28485 1.58911 1.20334 0.95815 0.93420 1.02293 1.18889 0.98986 0.95209 0.91189 1.20924 0.99921 0.96828 0.94836 1.17366 1.04996 0.95515 0.77277 1.91471 1.94759 1.95592 1.30330 1.20491 1.02270 0.99128 0.91934 1.19974 1.07650 0.95865 0.94937 1.18225 0.97112 0.92164 0.82704 1.86373 1.67054 1.53943 1.15494 1.24465 0.93333 0.75465 0.95888 1.88284 1.83453 1.30260 1.28490 1.21472 0.98985 0.96568 0.79840 0.91520 0.84465 0.90592 0.75649 0.88127 0.88363 0.83925 0.84614 0.84121 0.92150 0.86887 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.40 8.21 55.50 0.46 -21.95 16 2 C 0.04 1.02 5.41 -17.47 -0.09 0.92 16 3 Si 0.93 19.22 29.56 -169.99 -5.03 14.19 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 7 C -0.33 -7.97 9.00 -14.93 -0.13 -8.11 16 8 H 0.10 2.28 6.72 -52.49 -0.35 1.93 16 9 N -0.44 -10.86 2.11 -116.09 -0.25 -11.11 16 10 C 0.16 3.79 5.29 -5.19 -0.03 3.76 16 11 C 0.50 12.44 6.29 36.01 0.23 12.67 16 12 O -0.53 -14.50 16.95 -18.76 -0.32 -14.82 16 13 O -0.53 -10.98 13.42 -39.25 -0.53 -11.51 16 14 C 0.48 11.65 7.61 -10.99 -0.08 11.57 16 15 O -0.59 -15.78 15.59 5.54 0.09 -15.70 16 16 C -0.08 -1.56 4.09 -29.03 -0.12 -1.68 16 17 C -0.04 -0.76 4.40 -104.46 -0.46 -1.22 16 18 C -0.11 -1.82 9.65 -39.55 -0.38 -2.20 16 19 C 0.07 1.06 7.30 -39.43 -0.29 0.77 16 20 F -0.14 -2.20 17.27 2.25 0.04 -2.16 16 21 C -0.12 -1.62 9.69 -39.51 -0.38 -2.00 16 22 C -0.18 -2.62 5.82 -104.45 -0.61 -3.23 16 23 C 0.14 2.45 6.52 -39.24 -0.26 2.20 16 24 O -0.31 -5.22 9.58 -43.72 -0.42 -5.64 16 25 C 0.22 2.63 7.94 101.05 0.80 3.43 16 26 O -0.39 -5.03 10.97 -59.11 -0.65 -5.68 16 27 C 0.11 1.19 6.87 36.04 0.25 1.44 16 28 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 29 H 0.14 3.35 6.28 -51.93 -0.33 3.03 16 30 H 0.08 1.79 7.36 -51.93 -0.38 1.41 16 31 H 0.39 6.23 9.10 45.56 0.41 6.65 16 32 H 0.10 1.91 7.94 -51.93 -0.41 1.50 16 33 H 0.10 1.79 7.27 -51.93 -0.38 1.42 16 34 H 0.14 2.34 8.06 -52.48 -0.42 1.92 16 35 H 0.14 1.40 8.06 -52.48 -0.42 0.97 16 36 H 0.14 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 38 H 0.11 1.05 8.14 -51.92 -0.42 0.63 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 342.51 15.07 5.16 5.16 Total: -1.00 -33.52 342.51 -6.10 -39.63 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -3.11 Total: 11.26 kcal Atomic # 6 Polarization: 19.87 SS G_CDS: -1.56 Total: 18.31 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.21 Total: -33.05 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -1.83 Total: -53.34 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 19.22 SS G_CDS: -5.03 Total: 14.19 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.52 -6.10 -39.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -171.608 kcal (2) G-P(sol) polarization free energy of solvation -33.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds