Wall clock time and date at job start Tue Mar 31 2020 21:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86792 * 120.00297 * 2 1 4 4 H 1.48495 * 109.47675 * 240.00278 * 3 2 1 5 5 H 1.48506 * 109.47091 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47134 * 120.00271 * 3 2 1 7 7 C 1.38950 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00184 * 171.26072 * 7 2 1 9 9 N 1.37099 * 120.00164 * 351.25291 * 7 2 1 10 10 C 1.46507 * 119.99726 * 23.00682 * 9 7 2 11 11 C 1.50701 * 109.46759 * 269.99544 * 10 9 7 12 12 O 1.20835 * 120.00056 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99969 * 180.02562 * 11 10 9 14 14 C 1.34772 * 120.00257 * 203.00065 * 9 7 2 15 15 O 1.21299 * 119.99989 * 185.02300 * 14 9 7 16 16 C 1.50703 * 120.00287 * 5.01912 * 14 9 7 17 17 C 1.50699 * 109.47223 * 174.90394 * 16 14 9 18 18 C 1.38131 * 119.98732 * 264.99908 * 17 16 14 19 19 C 1.38429 * 120.00512 * 179.97438 * 18 17 16 20 20 F 1.35101 * 119.98467 * 180.02562 * 19 18 17 21 21 C 1.38449 * 120.03228 * 0.31287 * 19 18 17 22 22 C 1.38220 * 120.08808 * 359.50617 * 21 19 18 23 23 C 1.38617 * 119.93679 * 0.42185 * 22 21 19 24 24 O 1.36029 * 120.53274 * 179.97438 * 23 22 21 25 25 C 1.43046 * 116.84910 * 343.42066 * 24 23 22 26 26 O 1.43267 * 108.60300 * 47.46148 * 25 24 23 27 27 C 1.43080 * 113.02501 * 294.51308 * 26 25 24 28 28 H 0.96996 * 119.99867 * 5.00694 * 1 2 3 29 29 H 1.08992 * 109.47098 * 29.99269 * 10 9 7 30 30 H 1.08998 * 109.46862 * 150.00171 * 10 9 7 31 31 H 0.96701 * 117.00241 * 180.02562 * 13 11 10 32 32 H 1.08992 * 109.46601 * 54.89951 * 16 14 9 33 33 H 1.09005 * 109.46914 * 294.90615 * 16 14 9 34 34 H 1.08006 * 119.99674 * 359.97438 * 18 17 16 35 35 H 1.08004 * 119.95357 * 179.73095 * 21 19 18 36 36 H 1.09002 * 109.61648 * 167.19886 * 25 24 23 37 37 H 1.09001 * 109.61092 * 287.55016 * 25 24 23 38 38 H 1.09008 * 109.49325 * 168.55026 * 27 26 25 39 39 H 1.08999 * 109.50409 * 288.61327 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.1019 1.6964 -1.2124 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6962 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0794 -1.2088 -0.1426 9 7 1.3353 -2.3838 0.1795 10 6 -0.0954 -2.4647 -0.1254 11 6 -0.8918 -2.1144 1.1051 12 8 -0.3226 -1.8263 2.1314 13 8 -2.2333 -2.1225 1.0611 14 6 1.9893 -3.4699 0.6368 15 8 1.4165 -4.5367 0.7098 16 6 3.4322 -3.3591 1.0574 17 6 3.8874 -4.6715 1.6417 18 6 3.8474 -4.8698 3.0081 19 6 4.2649 -6.0754 3.5452 20 9 4.2251 -6.2691 4.8816 21 6 4.7288 -7.0807 2.7139 22 6 4.7664 -6.8864 1.3459 23 6 4.3473 -5.6802 0.8067 24 8 4.3796 -5.4758 -0.5377 25 6 5.1805 -6.3758 -1.3089 26 8 4.8840 -7.7165 -0.9001 27 6 5.2721 -7.9887 0.4499 28 1 -0.4850 0.8368 -0.0733 29 1 -0.3365 -1.7650 -0.9255 30 1 -0.3427 -3.4780 -0.4419 31 1 -2.7007 -1.8905 1.8753 32 1 3.5330 -2.5735 1.8061 33 1 4.0457 -3.1152 0.1901 34 1 3.4903 -4.0841 3.6575 35 1 5.0583 -8.0192 3.1347 36 1 4.9491 -6.2564 -2.3674 37 1 6.2361 -6.1636 -1.1390 38 1 4.8445 -8.9400 0.7666 39 1 6.3591 -8.0395 0.5129 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739079450.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:31 Heat of formation + Delta-G solvation = -233.425056 kcal Electronic energy + Delta-G solvation = -30242.836787 eV Core-core repulsion = 25644.218781 eV Total energy + Delta-G solvation = -4598.618006 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.88178 -42.06286 -41.16737 -40.02803 -38.77279 -37.44249 -37.01040 -36.38090 -34.09676 -33.44671 -31.86526 -30.25183 -28.29977 -27.54136 -26.80963 -26.50646 -23.45957 -22.47945 -22.04965 -21.07748 -19.63336 -19.04000 -18.74234 -18.49191 -18.26792 -17.89342 -17.36639 -17.17364 -16.69106 -16.37337 -16.21305 -16.15261 -16.14804 -15.98181 -15.53230 -15.26538 -15.24949 -14.56704 -14.49474 -14.13295 -13.95971 -13.75691 -13.39945 -13.14265 -13.03302 -12.91634 -12.79709 -12.61587 -12.45978 -12.18781 -12.13457 -12.04293 -11.75965 -11.49700 -11.23031 -10.95369 -10.58419 -9.89856 -9.86184 -9.13118 -8.32724 -6.01006 -0.00018 0.11788 1.42709 1.48465 1.57359 1.74994 1.91155 2.14166 2.23713 2.35644 2.56443 2.67035 3.01996 3.13699 3.20226 3.47335 3.56387 3.83339 3.97025 4.11744 4.26187 4.29936 4.37007 4.42830 4.50263 4.53617 4.55239 4.66165 4.83812 4.88957 4.95709 5.01661 5.06501 5.25464 5.42113 5.57933 5.72947 5.75218 5.91686 6.29195 6.35134 7.07246 7.38709 7.48186 7.87898 8.68923 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.012620 B = 0.003891 C = 0.003666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.115966 B = 7194.834014 C = 7636.172263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C -0.002 4.002 3 Si 0.998 3.002 4 H -0.256 1.256 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.343 4.343 8 H 0.117 0.883 9 N -0.446 5.446 10 C 0.153 3.847 11 C 0.507 3.493 12 O -0.561 6.561 13 O -0.521 6.521 14 C 0.470 3.530 15 O -0.624 6.624 16 C -0.067 4.067 17 C -0.071 4.071 18 C -0.123 4.123 19 C 0.057 3.943 20 F -0.143 7.143 21 C -0.103 4.103 22 C -0.181 4.181 23 C 0.128 3.872 24 O -0.341 6.341 25 C 0.211 3.789 26 O -0.402 6.402 27 C 0.104 3.896 28 H 0.272 0.728 29 H 0.135 0.865 30 H 0.076 0.924 31 H 0.410 0.590 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.136 0.864 35 H 0.176 0.824 36 H 0.159 0.841 37 H 0.092 0.908 38 H 0.135 0.865 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.469 -9.807 -0.791 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.202 4.202 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.469 4.469 8 H 0.135 0.865 9 N -0.165 5.165 10 C 0.027 3.973 11 C 0.351 3.649 12 O -0.451 6.451 13 O -0.333 6.333 14 C 0.261 3.739 15 O -0.512 6.512 16 C -0.106 4.106 17 C -0.073 4.073 18 C -0.142 4.142 19 C 0.037 3.963 20 F -0.122 7.122 21 C -0.121 4.121 22 C -0.182 4.182 23 C 0.083 3.917 24 O -0.257 6.257 25 C 0.099 3.901 26 O -0.321 6.321 27 C 0.029 3.971 28 H 0.083 0.917 29 H 0.152 0.848 30 H 0.094 0.906 31 H 0.269 0.731 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.154 0.846 35 H 0.194 0.806 36 H 0.176 0.824 37 H 0.109 0.891 38 H 0.152 0.848 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.215 -10.194 -1.011 15.190 hybrid contribution -0.492 1.498 1.126 1.938 sum 10.723 -8.696 0.115 13.806 Atomic orbital electron populations 1.69685 1.07431 1.28663 1.49054 1.26158 0.96363 1.02900 0.94774 0.84903 0.77622 0.76033 0.79293 1.18013 1.21306 1.19862 1.20047 0.94508 0.82596 1.49763 0.86528 1.43522 1.06286 1.10500 1.56195 1.20576 0.81431 1.01287 0.93991 1.23749 0.80302 0.70854 0.90007 1.90513 1.72041 1.47571 1.34976 1.84461 1.20985 1.82879 1.44982 1.20667 0.90050 0.83577 0.79599 1.90521 1.70929 1.29546 1.60176 1.20189 0.92976 0.94832 1.02605 1.18847 1.01235 0.95289 0.91895 1.20958 1.00807 0.97756 0.94654 1.17488 1.05595 0.95635 0.77548 1.91466 1.94832 1.95544 1.30365 1.20895 1.00089 0.99758 0.91407 1.20435 1.06282 0.95721 0.95787 1.18433 0.97395 0.92893 0.83017 1.86329 1.68218 1.55667 1.15529 1.24951 0.94429 0.74516 0.96182 1.88260 1.83926 1.30542 1.29417 1.21821 1.01196 0.95836 0.78266 0.91742 0.84806 0.90607 0.73103 0.88201 0.87309 0.84629 0.80625 0.82365 0.89083 0.84756 0.87386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.26 8.21 21.66 0.18 -46.08 16 2 C 0.00 -0.09 5.41 84.93 0.46 0.37 16 3 Si 1.00 39.04 29.56 68.60 2.03 41.07 16 4 H -0.26 -9.25 7.11 99.48 0.71 -8.54 16 5 H -0.29 -11.35 7.11 99.48 0.71 -10.65 16 6 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 7 C -0.34 -16.87 9.00 84.04 0.76 -16.12 16 8 H 0.12 5.22 6.72 -2.91 -0.02 5.20 16 9 N -0.45 -22.78 2.11 -639.59 -1.35 -24.14 16 10 C 0.15 7.63 5.29 85.63 0.45 8.08 16 11 C 0.51 25.46 6.29 71.24 0.45 25.90 16 12 O -0.56 -31.60 16.95 21.94 0.37 -31.23 16 13 O -0.52 -21.33 13.42 -51.39 -0.69 -22.02 16 14 C 0.47 23.45 7.61 87.66 0.67 24.11 16 15 O -0.62 -34.35 15.59 -3.09 -0.05 -34.39 16 16 C -0.07 -2.71 4.09 29.10 0.12 -2.59 16 17 C -0.07 -2.66 4.40 -19.76 -0.09 -2.75 16 18 C -0.12 -4.30 9.65 22.29 0.22 -4.08 16 19 C 0.06 1.72 7.30 22.37 0.16 1.88 16 20 F -0.14 -4.27 17.27 44.97 0.78 -3.49 16 21 C -0.10 -2.52 9.69 22.32 0.22 -2.30 16 22 C -0.18 -4.76 5.82 -19.75 -0.11 -4.87 16 23 C 0.13 4.30 6.52 22.49 0.15 4.45 16 24 O -0.34 -11.17 9.58 -71.05 -0.68 -11.86 16 25 C 0.21 4.57 7.94 113.37 0.90 5.47 16 26 O -0.40 -9.42 10.97 -126.14 -1.38 -10.80 16 27 C 0.10 1.91 6.87 71.26 0.49 2.40 16 28 H 0.27 13.38 8.32 -92.71 -0.77 12.61 16 29 H 0.13 6.72 6.28 -2.39 -0.02 6.71 16 30 H 0.08 3.71 7.36 -2.39 -0.02 3.69 16 31 H 0.41 12.83 9.10 -74.06 -0.67 12.16 16 32 H 0.10 3.95 7.94 -2.39 -0.02 3.93 16 33 H 0.11 4.05 7.27 -2.38 -0.02 4.04 16 34 H 0.14 4.71 8.06 -2.91 -0.02 4.68 16 35 H 0.18 2.81 8.06 -2.91 -0.02 2.79 16 36 H 0.16 2.68 8.14 -2.39 -0.02 2.66 16 37 H 0.09 1.39 8.13 -2.39 -0.02 1.37 16 38 H 0.13 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -73.70 342.51 4.50 -69.20 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.46 Total: 33.78 kcal Atomic # 6 Polarization: 35.13 SS G_CDS: 4.83 Total: 39.96 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -1.17 Total: -70.22 kcal Atomic # 8 Polarization: -107.87 SS G_CDS: -2.43 Total: -110.30 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.78 Total: -3.49 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.07 kcal Total: -73.70 4.50 -69.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739079450.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.222 kcal (2) G-P(sol) polarization free energy of solvation -73.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -237.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -233.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds