Wall clock time and date at job start Tue Mar 31 2020 22:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.47105 * 180.02562 * 18 16 15 20 20 S 1.81399 * 109.47099 * 180.02562 * 19 18 16 21 21 C 1.81397 * 102.99790 * 180.02562 * 20 19 18 22 22 C 1.50704 * 109.47171 * 180.02562 * 21 20 19 23 23 O 1.20834 * 119.99738 * 0.02562 * 22 21 20 24 24 O 1.34227 * 120.00322 * 179.97438 * 22 21 20 25 25 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 26 26 C 1.38101 * 120.07425 * 359.95492 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 30 30 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 31 31 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 32 32 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 34 34 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 35 35 H 1.08998 * 109.47672 * 300.00907 * 19 18 16 36 36 H 1.09005 * 109.46733 * 60.00805 * 19 18 16 37 37 H 1.09001 * 109.47363 * 300.00194 * 21 20 19 38 38 H 1.09000 * 109.47329 * 60.00390 * 21 20 19 39 39 H 0.96699 * 117.00467 * 180.02562 * 24 22 21 40 40 H 1.07999 * 119.96503 * 179.97438 * 25 13 12 41 41 H 1.07992 * 120.03608 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 6 6.4544 -10.5958 2.2832 20 16 6.7743 -11.2679 3.9375 21 6 7.7520 -12.7561 3.5911 22 6 8.1026 -13.4398 4.8876 23 8 7.7305 -12.9714 5.9375 24 8 8.8272 -14.5696 4.8760 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0951 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6954 -6.8451 -0.4339 30 1 3.8358 -7.8149 -1.0361 31 1 5.3320 -6.8560 -0.9360 32 1 4.2983 -7.1684 1.6738 33 1 6.1753 -8.5817 2.9944 34 1 4.6787 -9.5401 2.8951 35 1 5.9052 -11.3295 1.6932 36 1 7.4015 -10.3705 1.7928 37 1 7.1708 -13.4358 2.9679 38 1 8.6667 -12.4764 3.0686 39 1 9.0268 -14.9720 5.7324 40 1 5.2812 -4.5470 -0.1945 41 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739088962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:29 Heat of formation + Delta-G solvation = -135.438505 kcal Electronic energy + Delta-G solvation = -24399.461014 eV Core-core repulsion = 20371.305199 eV Total energy + Delta-G solvation = -4028.155815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.69216 -39.89259 -39.07875 -36.94018 -36.71014 -34.52249 -33.25127 -32.39266 -31.06129 -30.33520 -29.97686 -26.35749 -25.32692 -23.95879 -22.52009 -22.09772 -20.69237 -20.41046 -18.71839 -18.11914 -17.65312 -17.29498 -16.97120 -16.74631 -16.27700 -16.10719 -15.89678 -14.95906 -14.71254 -14.49947 -14.27896 -13.99921 -13.77836 -13.72554 -13.68855 -13.46058 -12.88759 -12.82508 -12.77191 -12.68644 -12.17312 -12.10198 -11.78092 -11.67140 -11.44568 -11.22865 -11.02110 -10.82977 -10.73308 -10.49776 -10.46688 -10.00941 -9.46158 -9.06931 -8.94390 -8.32922 -8.16932 -7.36849 -6.55970 -4.14875 0.74687 1.58845 1.92950 2.03407 2.08889 2.49032 2.52072 3.05283 3.07935 3.13499 3.34545 3.87926 4.30768 4.32452 4.44717 4.52603 4.53963 4.65881 4.74714 4.98438 5.10366 5.15182 5.23120 5.28929 5.37802 5.47418 5.61381 5.75318 5.85639 5.88057 6.08336 6.30528 6.40538 6.55751 6.76130 6.91850 7.10024 7.22728 7.26151 7.31610 7.48081 7.67558 7.88678 8.12140 8.89442 9.57087 10.61520 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.001459 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.048838 B =19180.852278 C =19632.160636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.394 4.394 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.195 4.195 12 C -0.054 4.054 13 C -0.217 4.217 14 C 0.179 3.821 15 N -0.719 5.719 16 C 0.516 3.484 17 O -0.549 6.549 18 C -0.127 4.127 19 C -0.084 4.084 20 S -0.183 6.183 21 C -0.105 4.105 22 C 0.497 3.503 23 O -0.492 6.492 24 O -0.512 6.512 25 C -0.050 4.050 26 C -0.237 4.237 27 H 0.271 0.729 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.404 0.596 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.417 0.583 40 H 0.108 0.892 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.562 -22.904 6.235 27.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.164 4.164 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.470 4.470 8 H 0.112 0.888 9 O -0.075 6.075 10 C 0.106 3.894 11 C -0.214 4.214 12 C -0.073 4.073 13 C -0.219 4.219 14 C 0.057 3.943 15 N -0.370 5.370 16 C 0.300 3.700 17 O -0.428 6.428 18 C -0.168 4.168 19 C -0.233 4.233 20 S 0.044 5.956 21 C -0.254 4.254 22 C 0.336 3.664 23 O -0.378 6.378 24 O -0.325 6.325 25 C -0.069 4.069 26 C -0.256 4.256 27 H 0.081 0.919 28 H 0.137 0.863 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.238 0.762 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.277 0.723 40 H 0.126 0.874 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 13.924 -22.386 6.444 27.139 hybrid contribution 0.826 0.355 -0.291 0.945 sum 14.750 -22.031 6.153 27.217 Atomic orbital electron populations 1.70041 1.06020 1.27813 1.45365 1.25326 0.95862 0.98954 0.96298 0.85625 0.79154 0.80175 0.78360 1.19028 1.20042 1.20044 1.21412 0.91908 0.80686 1.52974 0.88834 1.83977 1.34560 1.11594 1.77416 1.19446 0.90327 0.88057 0.91590 1.20216 0.99695 0.90270 1.11256 1.20530 0.92748 0.96843 0.97178 1.19193 0.93568 0.93477 1.15617 1.19991 0.98599 0.92662 0.83048 1.46355 1.54395 1.25773 1.10518 1.20392 0.78117 0.80736 0.90763 1.90699 1.51612 1.59808 1.40671 1.21327 1.02499 0.96845 0.96116 1.23235 1.04336 0.99905 0.95794 1.87470 1.69186 1.27218 1.11774 1.22995 1.05572 0.99655 0.97162 1.22269 0.74883 0.78611 0.90594 1.90805 1.49975 1.63845 1.33178 1.84476 1.67260 1.39108 1.41698 1.20638 0.98367 0.91666 0.96239 1.21164 0.93773 0.98980 1.11705 0.91891 0.86349 0.86958 0.91486 0.91529 0.76157 0.87741 0.87732 0.88854 0.88856 0.85681 0.85681 0.72349 0.87403 0.85393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.41 13.67 55.48 0.76 -23.65 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.83 29.55 -169.99 -5.02 14.81 16 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 7 C -0.39 -10.58 9.49 30.89 0.29 -10.29 16 8 H 0.09 2.32 5.20 -52.49 -0.27 2.05 16 9 O -0.17 -4.74 9.76 0.05 0.00 -4.74 16 10 C 0.16 3.66 6.65 -39.11 -0.26 3.40 16 11 C -0.20 -3.83 9.99 -39.39 -0.39 -4.22 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.22 -3.32 5.25 -104.58 -0.55 -3.86 16 14 C 0.18 2.33 5.80 -5.19 -0.03 2.30 16 15 N -0.72 -7.94 5.55 -61.47 -0.34 -8.28 16 16 C 0.52 5.71 7.83 -10.99 -0.09 5.62 16 17 O -0.55 -7.97 15.98 5.56 0.09 -7.88 16 18 C -0.13 -0.99 5.71 -27.88 -0.16 -1.15 16 19 C -0.08 -0.64 5.23 37.16 0.19 -0.44 16 20 S -0.18 -1.51 20.88 -107.50 -2.24 -3.75 16 21 C -0.11 -0.59 6.54 36.01 0.24 -0.35 16 22 C 0.50 3.51 8.35 36.01 0.30 3.81 16 23 O -0.49 -5.31 16.62 -18.76 -0.31 -5.62 16 24 O -0.51 -2.27 13.42 -39.25 -0.53 -2.80 16 25 C -0.05 -0.84 9.69 -39.61 -0.38 -1.22 16 26 C -0.24 -4.79 9.17 -39.39 -0.36 -5.15 16 27 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 29 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 32 H 0.40 3.89 8.46 -40.82 -0.35 3.55 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.72 8.10 -51.92 -0.42 0.30 16 36 H 0.09 0.72 8.10 -51.92 -0.42 0.30 16 37 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 38 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 39 H 0.42 0.19 9.10 45.56 0.41 0.60 16 40 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.13 2.62 5.64 -52.49 -0.30 2.32 16 LS Contribution 377.45 15.07 5.69 5.69 Total: -1.00 -34.23 377.45 -7.87 -42.10 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.27 Total: 5.97 kcal Atomic # 6 Polarization: -10.17 SS G_CDS: -1.68 Total: -11.85 kcal Atomic # 7 Polarization: -32.35 SS G_CDS: 0.42 Total: -31.93 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.75 Total: -21.03 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.24 Total: -3.75 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.23 -7.87 -42.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.342 kcal (2) G-P(sol) polarization free energy of solvation -34.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds