Wall clock time and date at job start Tue Mar 31 2020 22:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48499 * 109.47264 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47375 * 300.00329 * 3 2 1 6 6 H 1.48506 * 109.47301 * 60.00327 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46508 * 109.47103 * 270.02170 * 14 13 12 16 16 C 1.34769 * 120.00011 * 179.97438 * 15 14 13 17 17 O 1.21277 * 120.00264 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99776 * 179.97438 * 16 15 14 19 19 C 1.53004 * 109.47105 * 180.02562 * 18 16 15 20 20 S 1.81399 * 109.47099 * 180.02562 * 19 18 16 21 21 C 1.81397 * 102.99790 * 180.02562 * 20 19 18 22 22 C 1.50704 * 109.47171 * 180.02562 * 21 20 19 23 23 O 1.20834 * 119.99738 * 0.02562 * 22 21 20 24 24 O 1.34227 * 120.00322 * 179.97438 * 22 21 20 25 25 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 26 26 C 1.38101 * 120.07425 * 359.95492 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 30 30 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 31 31 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 32 32 H 0.97001 * 119.99475 * 0.02562 * 15 14 13 33 33 H 1.08998 * 109.47596 * 300.00954 * 18 16 15 34 34 H 1.09005 * 109.46667 * 60.00766 * 18 16 15 35 35 H 1.08998 * 109.47672 * 300.00907 * 19 18 16 36 36 H 1.09005 * 109.46733 * 60.00805 * 19 18 16 37 37 H 1.09001 * 109.47363 * 300.00194 * 21 20 19 38 38 H 1.09000 * 109.47329 * 60.00390 * 21 20 19 39 39 H 0.96699 * 117.00467 * 180.02562 * 24 22 21 40 40 H 1.07999 * 119.96503 * 179.97438 * 25 13 12 41 41 H 1.07992 * 120.03608 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.7095 1.3464 -0.0006 5 1 1.8908 2.3964 -1.2124 6 1 1.8908 2.3964 1.2126 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6433 -7.6242 0.8901 16 6 5.3595 -8.7572 1.0302 17 8 5.7904 -9.3273 0.0503 18 6 5.6258 -9.3153 2.4045 19 6 6.4544 -10.5958 2.2832 20 16 6.7743 -11.2679 3.9375 21 6 7.7520 -12.7561 3.5911 22 6 8.1026 -13.4398 4.8876 23 8 7.7305 -12.9714 5.9375 24 8 8.8272 -14.5696 4.8760 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0951 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6954 -6.8451 -0.4339 30 1 3.8358 -7.8149 -1.0361 31 1 5.3320 -6.8560 -0.9360 32 1 4.2983 -7.1684 1.6738 33 1 6.1753 -8.5817 2.9944 34 1 4.6787 -9.5401 2.8951 35 1 5.9052 -11.3295 1.6932 36 1 7.4015 -10.3705 1.7928 37 1 7.1708 -13.4358 2.9679 38 1 8.6667 -12.4764 3.0686 39 1 9.0268 -14.9720 5.7324 40 1 5.2812 -4.5470 -0.1945 41 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739088962.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:04:28 Heat of formation + Delta-G solvation = -159.547331 kcal Electronic energy + Delta-G solvation = -24400.506451 eV Core-core repulsion = 20371.305199 eV Total energy + Delta-G solvation = -4029.201252 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.21669 -41.02499 -40.51427 -38.50679 -37.19982 -35.66384 -34.28593 -33.92415 -31.83871 -31.54278 -31.31045 -27.81308 -26.79542 -24.92171 -23.64402 -23.02365 -22.13068 -21.30306 -19.87277 -19.21622 -18.91964 -18.35900 -17.79533 -17.26195 -17.04085 -16.89714 -16.72162 -16.40882 -16.28545 -15.82561 -15.53485 -15.29918 -15.07432 -14.76708 -14.39347 -14.27225 -14.24878 -14.03671 -13.64318 -13.54106 -13.34111 -13.25301 -13.01744 -12.62628 -12.56145 -12.37610 -12.32626 -12.24058 -12.08775 -11.81943 -11.19874 -11.05142 -10.97526 -10.78061 -10.04951 -9.80504 -9.00527 -8.77022 -8.48498 -6.16672 0.21986 0.56287 0.58178 1.07799 1.36202 1.40185 1.43483 1.53918 1.65871 2.08107 2.16918 2.37412 2.86997 3.17555 3.49554 3.70255 3.85769 3.96700 3.97195 4.03961 4.04420 4.16235 4.17910 4.30083 4.46450 4.56737 4.57567 4.73371 4.78840 4.82108 4.90162 5.04947 5.14752 5.27117 5.44938 5.51681 5.53394 5.69682 5.75335 6.01643 6.16729 6.59353 6.87621 6.96588 7.25185 7.75899 8.74530 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.001459 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.048838 B =19180.852278 C =19632.160636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.269 1.269 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.230 6.230 10 C 0.121 3.879 11 C -0.205 4.205 12 C -0.044 4.044 13 C -0.182 4.182 14 C 0.184 3.816 15 N -0.715 5.715 16 C 0.520 3.480 17 O -0.583 6.583 18 C -0.120 4.120 19 C -0.071 4.071 20 S -0.226 6.226 21 C -0.098 4.098 22 C 0.501 3.499 23 O -0.537 6.537 24 O -0.504 6.504 25 C -0.046 4.046 26 C -0.244 4.244 27 H 0.273 0.727 28 H 0.114 0.886 29 H 0.148 0.852 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.118 0.882 34 H 0.119 0.881 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.434 0.566 40 H 0.140 0.860 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.230 -25.274 6.158 31.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.194 1.194 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.137 6.137 10 C 0.070 3.930 11 C -0.224 4.224 12 C -0.062 4.062 13 C -0.184 4.184 14 C 0.061 3.939 15 N -0.367 5.367 16 C 0.306 3.694 17 O -0.463 6.463 18 C -0.161 4.161 19 C -0.220 4.220 20 S 0.000 6.000 21 C -0.246 4.246 22 C 0.343 3.657 23 O -0.426 6.426 24 O -0.319 6.319 25 C -0.064 4.064 26 C -0.263 4.263 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.166 0.834 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.249 0.751 33 H 0.136 0.864 34 H 0.137 0.863 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.296 0.704 40 H 0.158 0.842 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.639 -24.832 6.381 30.565 hybrid contribution 0.185 0.603 -0.284 0.692 sum 16.824 -24.229 6.097 30.121 Atomic orbital electron populations 1.70181 1.08028 1.28785 1.48660 1.26569 0.96808 1.02720 0.95796 0.84538 0.78323 0.74924 0.78509 1.17379 1.19495 1.19393 1.21873 0.92574 0.81327 1.53149 0.87880 1.83946 1.36126 1.12709 1.80875 1.20013 0.91670 0.87957 0.93321 1.20456 1.00085 0.90460 1.11419 1.20895 0.93115 0.96971 0.95241 1.19519 0.93460 0.94196 1.11187 1.19879 0.98365 0.91326 0.84298 1.46184 1.54533 1.25982 1.09992 1.20822 0.77029 0.80045 0.91515 1.90694 1.52878 1.60676 1.42085 1.21323 1.03531 0.97147 0.94104 1.23116 1.04180 0.99680 0.95018 1.87622 1.70202 1.29371 1.12758 1.23070 1.06306 0.98460 0.96799 1.22509 0.74087 0.78656 0.90406 1.90795 1.51918 1.65154 1.34775 1.84446 1.66289 1.38051 1.43118 1.20949 0.99830 0.90756 0.94885 1.21249 0.92992 1.00117 1.11973 0.91817 0.86750 0.83405 0.90829 0.91086 0.75091 0.86368 0.86299 0.88939 0.88977 0.83530 0.83542 0.70362 0.84247 0.86280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.25 13.67 21.62 0.30 -54.95 16 2 C -0.02 -1.17 5.49 84.84 0.47 -0.70 16 3 Si 1.02 41.77 29.55 68.60 2.03 43.79 16 4 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 7 C -0.41 -23.32 9.49 67.92 0.64 -22.67 16 8 H 0.10 5.31 5.20 -2.91 -0.02 5.30 16 9 O -0.23 -13.40 9.76 -22.72 -0.22 -13.62 16 10 C 0.12 5.70 6.65 22.58 0.15 5.85 16 11 C -0.20 -8.05 9.99 22.39 0.22 -7.83 16 12 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 13 C -0.18 -4.94 5.25 -19.84 -0.10 -5.04 16 14 C 0.18 4.02 5.80 85.63 0.50 4.52 16 15 N -0.72 -13.01 5.55 -466.80 -2.59 -15.60 16 16 C 0.52 9.78 7.83 87.66 0.69 10.47 16 17 O -0.58 -15.20 15.98 -3.02 -0.05 -15.25 16 18 C -0.12 -1.51 5.71 29.85 0.17 -1.33 16 19 C -0.07 -0.91 5.23 71.98 0.38 -0.53 16 20 S -0.23 -3.32 20.88 -56.49 -1.18 -4.50 16 21 C -0.10 -0.86 6.54 71.24 0.47 -0.40 16 22 C 0.50 6.23 8.35 71.24 0.59 6.82 16 23 O -0.54 -11.20 16.62 21.94 0.36 -10.84 16 24 O -0.50 -3.34 13.42 -51.39 -0.69 -4.03 16 25 C -0.05 -1.40 9.69 22.25 0.22 -1.19 16 26 C -0.24 -9.84 9.17 22.39 0.21 -9.63 16 27 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 28 H 0.11 4.50 8.06 -2.91 -0.02 4.47 16 29 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 31 H 0.07 1.58 8.08 -2.39 -0.02 1.56 16 32 H 0.41 6.31 8.46 -92.71 -0.78 5.53 16 33 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.09 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 37 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.43 -0.45 9.10 -74.06 -0.67 -1.13 16 40 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.12 4.95 5.64 -2.91 -0.02 4.93 16 Total: -1.00 -79.50 377.45 2.40 -77.10 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -0.37 Total: 20.66 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 4.81 Total: -22.76 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -2.29 Total: -70.55 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.60 Total: -43.74 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: -3.32 SS G_CDS: -1.18 Total: -4.50 kcal Total: -79.50 2.40 -77.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739088962.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.451 kcal (2) G-P(sol) polarization free energy of solvation -79.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds