Wall clock time and date at job start Tue Mar 31 2020 21:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48498 * 109.47517 * 239.99948 * 3 2 1 5 5 H 1.48505 * 109.47332 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46989 * 120.00101 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 C 1.50705 * 109.46992 * 270.02253 * 14 13 12 16 16 O 1.21287 * 119.99956 * 359.97438 * 15 14 13 17 17 N 1.34775 * 120.00246 * 180.02562 * 15 14 13 18 18 C 1.46495 * 120.00172 * 179.97438 * 17 15 14 19 19 C 1.53004 * 109.47156 * 179.97438 * 18 17 15 20 20 S 1.81399 * 109.47099 * 179.97438 * 19 18 17 21 21 C 1.81397 * 102.99790 * 180.02562 * 20 19 18 22 22 C 1.50704 * 109.47171 * 180.02562 * 21 20 19 23 23 O 1.20834 * 119.99738 * 0.02562 * 22 21 20 24 24 O 1.34227 * 120.00322 * 179.97438 * 22 21 20 25 25 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 26 26 C 1.38101 * 120.07425 * 359.95492 * 25 13 12 27 27 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 28 28 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 29 29 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 30 30 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 31 31 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 32 32 H 0.97005 * 119.99604 * 359.97438 * 17 15 14 33 33 H 1.08998 * 109.47323 * 300.00278 * 18 17 15 34 34 H 1.09005 * 109.46890 * 60.00059 * 18 17 15 35 35 H 1.08998 * 109.47672 * 300.00603 * 19 18 17 36 36 H 1.09005 * 109.46733 * 60.00502 * 19 18 17 37 37 H 1.09001 * 109.47363 * 300.00194 * 21 20 19 38 38 H 1.09000 * 109.47329 * 60.00390 * 21 20 19 39 39 H 0.96699 * 117.00467 * 180.02562 * 24 22 21 40 40 H 1.07999 * 119.96503 * 179.97438 * 25 13 12 41 41 H 1.07992 * 120.03608 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 3.1033 1.6965 -1.2124 5 1 1.2845 2.7465 0.0006 6 1 3.1033 1.6963 1.2125 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 6 4.6507 -7.6397 0.9284 16 8 4.2201 -7.0694 1.9084 17 7 5.3677 -8.7723 1.0686 18 6 5.6266 -9.3147 2.4046 19 6 6.4552 -10.5952 2.2833 20 16 6.7764 -11.2666 3.9376 21 6 7.7539 -12.7548 3.5913 22 6 8.1055 -13.4379 4.8878 23 8 7.7342 -12.9690 5.9377 24 8 8.8302 -14.5677 4.8762 25 6 4.2024 -4.5970 -0.2043 26 6 3.4573 -3.4394 -0.0951 27 1 -0.4850 0.8400 0.0004 28 1 0.3579 -4.7892 -0.2301 29 1 1.6954 -6.8451 -0.4339 30 1 3.8358 -7.8149 -1.0361 31 1 5.3320 -6.8560 -0.9360 32 1 5.7124 -9.2282 0.2848 33 1 6.1754 -8.5809 2.9947 34 1 4.6795 -9.5403 2.8948 35 1 5.9060 -11.3290 1.6933 36 1 7.4023 -10.3700 1.7929 37 1 7.1723 -13.4349 2.9688 38 1 8.6683 -12.4753 3.0679 39 1 9.0304 -14.9696 5.7326 40 1 5.2812 -4.5470 -0.1945 41 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739089167.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:39 Heat of formation + Delta-G solvation = -157.873840 kcal Electronic energy + Delta-G solvation = -24515.393520 eV Core-core repulsion = 20486.264836 eV Total energy + Delta-G solvation = -4029.128684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21474 -41.06918 -40.36083 -38.23945 -37.20111 -36.31946 -34.39033 -33.07120 -31.77774 -31.63807 -31.29973 -28.16186 -26.98581 -24.41447 -23.62052 -22.95462 -22.45640 -21.33847 -19.83199 -19.20835 -18.85340 -18.21806 -17.57247 -17.31660 -17.25142 -16.84533 -16.80622 -16.37607 -16.28193 -15.83698 -15.51329 -15.42025 -15.02432 -14.74717 -14.39162 -14.24745 -14.23305 -14.07038 -13.75877 -13.58809 -13.22844 -12.95578 -12.93982 -12.64510 -12.60899 -12.43510 -12.27143 -12.23613 -12.12389 -11.82172 -11.16977 -11.08484 -10.88309 -10.72311 -10.10485 -9.74466 -8.88514 -8.80495 -8.46411 -6.14823 0.15839 0.63347 0.69882 1.08910 1.34265 1.39065 1.45572 1.51056 1.75150 2.07600 2.18581 2.39727 2.87467 3.20337 3.53471 3.67246 3.89020 3.91858 4.00328 4.08042 4.16356 4.19799 4.27161 4.31550 4.41517 4.52499 4.61749 4.71766 4.75662 4.83053 4.88775 5.11303 5.15724 5.32533 5.43197 5.52859 5.58429 5.73270 5.79726 6.03678 6.25558 6.64611 6.87509 6.97862 7.38758 7.79503 8.76846 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.028565 B = 0.001472 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 980.002411 B =19019.682420 C =19405.872011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.023 4.023 3 Si 1.020 2.980 4 H -0.255 1.255 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.416 4.416 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.111 3.889 11 C -0.208 4.208 12 C -0.058 4.058 13 C -0.147 4.147 14 C -0.075 4.075 15 C 0.510 3.490 16 O -0.583 6.583 17 N -0.712 5.712 18 C 0.136 3.864 19 C -0.093 4.093 20 S -0.242 6.242 21 C -0.090 4.090 22 C 0.498 3.502 23 O -0.541 6.541 24 O -0.504 6.504 25 C -0.060 4.060 26 C -0.246 4.246 27 H 0.273 0.727 28 H 0.111 0.889 29 H 0.148 0.852 30 H 0.135 0.865 31 H 0.132 0.868 32 H 0.422 0.578 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.433 0.567 40 H 0.140 0.860 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.739 -31.489 -1.139 38.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.179 1.179 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.492 4.492 8 H 0.117 0.883 9 O -0.142 6.142 10 C 0.060 3.940 11 C -0.228 4.228 12 C -0.076 4.076 13 C -0.149 4.149 14 C -0.114 4.114 15 C 0.297 3.703 16 O -0.461 6.461 17 N -0.368 5.368 18 C 0.011 3.989 19 C -0.241 4.241 20 S -0.018 6.018 21 C -0.238 4.238 22 C 0.340 3.660 23 O -0.431 6.431 24 O -0.318 6.318 25 C -0.078 4.078 26 C -0.265 4.265 27 H 0.082 0.918 28 H 0.129 0.871 29 H 0.166 0.834 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.261 0.739 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.296 0.704 40 H 0.157 0.843 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 20.538 -30.252 0.475 36.568 hybrid contribution 0.392 0.264 -0.330 0.576 sum 20.930 -29.988 0.145 36.570 Atomic orbital electron populations 1.70183 1.08042 1.28840 1.48904 1.26614 0.96877 1.02743 0.95814 0.84641 0.77397 0.74190 0.79914 1.17880 1.19451 1.18443 1.21793 0.92499 0.81531 1.53392 0.88261 1.83933 1.35999 1.12639 1.81615 1.19963 0.91706 0.87977 0.94304 1.20453 0.99884 0.90809 1.11613 1.20902 0.93608 0.96768 0.96298 1.19310 0.93374 0.94527 1.07645 1.20530 1.02834 0.94765 0.93256 1.21275 0.76856 0.80021 0.92111 1.90781 1.52081 1.60586 1.42679 1.45732 1.55603 1.26254 1.09225 1.20726 0.99138 0.93807 0.85224 1.23535 1.05028 0.99285 0.96243 1.88184 1.70502 1.30015 1.13065 1.23045 1.06355 0.97865 0.96512 1.22652 0.74062 0.78672 0.90640 1.90815 1.52020 1.65198 1.35096 1.84437 1.66276 1.38048 1.43082 1.20956 0.99757 0.91205 0.95906 1.21239 0.93113 1.00142 1.12001 0.91844 0.87103 0.83429 0.84725 0.84965 0.73915 0.92679 0.92613 0.86303 0.86356 0.82820 0.82831 0.70430 0.84263 0.86551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.32 13.67 21.62 0.30 -58.02 16 2 C -0.02 -1.37 5.49 84.84 0.47 -0.90 16 3 Si 1.02 44.26 29.55 68.60 2.03 46.29 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 6 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 7 C -0.42 -25.33 9.49 67.92 0.64 -24.69 16 8 H 0.10 5.56 5.20 -2.91 -0.02 5.55 16 9 O -0.23 -14.91 9.76 -22.72 -0.22 -15.14 16 10 C 0.11 5.87 6.65 22.58 0.15 6.02 16 11 C -0.21 -9.49 9.99 22.39 0.22 -9.27 16 12 C -0.06 -2.03 9.69 22.25 0.22 -1.82 16 13 C -0.15 -4.63 4.38 -19.84 -0.09 -4.71 16 14 C -0.07 -1.33 5.83 29.10 0.17 -1.16 16 15 C 0.51 11.47 7.82 87.66 0.69 12.15 16 16 O -0.58 -21.00 16.03 -3.05 -0.05 -21.05 16 17 N -0.71 -9.03 5.56 -463.05 -2.57 -11.60 16 18 C 0.14 2.04 5.68 86.38 0.49 2.54 16 19 C -0.09 -0.58 6.05 71.98 0.44 -0.15 16 20 S -0.24 -3.28 20.88 -56.49 -1.18 -4.46 16 21 C -0.09 -0.45 6.54 71.24 0.47 0.01 16 22 C 0.50 5.34 8.35 71.24 0.59 5.93 16 23 O -0.54 -11.17 16.62 21.94 0.36 -10.80 16 24 O -0.50 -2.43 13.42 -51.39 -0.69 -3.12 16 25 C -0.06 -2.18 9.69 22.25 0.22 -1.96 16 26 C -0.25 -11.41 9.17 22.39 0.21 -11.21 16 27 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 28 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 29 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 30 H 0.13 1.44 8.08 -2.39 -0.02 1.42 16 31 H 0.13 1.48 8.08 -2.39 -0.02 1.46 16 32 H 0.42 1.37 8.47 -92.70 -0.79 0.58 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.15 -0.07 8.14 -2.39 -0.02 -0.09 16 39 H 0.43 -0.93 9.10 -74.06 -0.67 -1.60 16 40 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 41 H 0.12 5.48 5.64 -2.91 -0.02 5.47 16 Total: -1.00 -96.54 377.56 2.48 -94.05 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -0.37 Total: 13.07 kcal Atomic # 6 Polarization: -34.09 SS G_CDS: 4.88 Total: -29.21 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -2.28 Total: -69.62 kcal Atomic # 8 Polarization: -49.51 SS G_CDS: -0.60 Total: -50.11 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: -3.28 SS G_CDS: -1.18 Total: -4.46 kcal Total: -96.54 2.48 -94.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739089167.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.824 kcal (2) G-P(sol) polarization free energy of solvation -96.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds