Wall clock time and date at job start Tue Mar 31 2020 22:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47410 * 240.00331 * 3 2 1 5 5 H 1.48502 * 109.47458 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47081 * 120.00175 * 3 2 1 7 7 C 1.38793 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00369 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00178 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47130 * 179.97438 * 10 9 7 12 12 O 1.21296 * 120.00273 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00055 * 179.97438 * 11 10 9 14 14 C 1.40106 * 119.99966 * 185.27709 * 13 11 10 15 15 C 1.38845 * 120.01660 * 33.29894 * 14 13 11 16 16 C 1.38091 * 119.98490 * 180.02562 * 15 14 13 17 17 C 1.38727 * 120.01470 * 0.02562 * 16 15 14 18 18 O 1.35965 * 119.98787 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00323 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.46860 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.46691 * 179.97438 * 20 19 18 22 22 C 1.50703 * 109.47100 * 180.02562 * 21 20 19 23 23 O 1.20820 * 120.00074 * 0.02562 * 22 21 20 24 24 O 1.34229 * 119.99719 * 179.97438 * 22 21 20 25 25 C 1.38728 * 120.02920 * 0.23417 * 17 16 15 26 26 C 1.38092 * 120.01107 * 359.49289 * 25 17 16 27 27 H 0.97007 * 120.00088 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46911 * 59.99631 * 10 9 7 29 29 H 1.09003 * 109.46791 * 300.00133 * 10 9 7 30 30 H 0.97005 * 119.99531 * 5.27094 * 13 11 10 31 31 H 1.07992 * 120.00967 * 359.97438 * 15 14 13 32 32 H 1.07997 * 119.99325 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.46743 * 299.99874 * 19 18 17 34 34 H 1.08999 * 109.46602 * 60.00280 * 19 18 17 35 35 H 1.08990 * 109.47598 * 299.99972 * 20 19 18 36 36 H 1.08999 * 109.47388 * 60.00634 * 20 19 18 37 37 H 1.09004 * 109.47349 * 300.00240 * 21 20 19 38 38 H 1.09001 * 109.47157 * 60.00186 * 21 20 19 39 39 H 0.96706 * 116.99600 * 179.97438 * 24 22 21 40 40 H 1.07992 * 119.98975 * 179.72137 * 25 17 16 41 41 H 1.08006 * 120.00512 * 180.23725 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3026 0.0001 12 8 0.7910 -5.5023 0.0010 13 7 2.8442 -6.3431 -0.0003 14 6 2.3567 -7.6519 -0.1113 15 6 1.2220 -7.9085 -0.8692 16 6 0.7418 -9.1987 -0.9778 17 6 1.3926 -10.2382 -0.3293 18 8 0.9190 -11.5082 -0.4361 19 6 1.6382 -12.5294 0.2582 20 6 0.9613 -13.8809 0.0211 21 6 1.7317 -14.9743 0.7640 22 6 1.0654 -16.3056 0.5300 23 8 0.0763 -16.3731 -0.1605 24 8 1.5716 -17.4166 1.0879 25 6 2.5232 -9.9817 0.4325 26 6 3.0077 -8.6928 0.5373 27 1 -0.4850 0.8401 -0.0004 28 1 3.1245 -3.7312 0.8894 29 1 3.1245 -3.7312 -0.8905 30 1 3.7983 -6.1856 0.0762 31 1 0.7146 -7.0993 -1.3731 32 1 -0.1410 -9.3984 -1.5669 33 1 2.6631 -12.5670 -0.1109 34 1 1.6441 -12.3078 1.3255 35 1 -0.0637 -13.8436 0.3898 36 1 0.9557 -14.1022 -1.0462 37 1 2.7566 -15.0114 0.3949 38 1 1.7377 -14.7532 1.8314 39 1 1.1094 -18.2471 0.9094 40 1 3.0267 -10.7907 0.9407 41 1 3.8902 -8.4937 1.1273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739090957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:25 Heat of formation + Delta-G solvation = -146.062264 kcal Electronic energy + Delta-G solvation = -24537.685696 eV Core-core repulsion = 20509.069200 eV Total energy + Delta-G solvation = -4028.616495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.83894 -40.54577 -39.50616 -37.44419 -36.75451 -34.74303 -33.95738 -32.46327 -31.14654 -30.21186 -28.64552 -27.42837 -25.51148 -24.13355 -22.64230 -22.27572 -21.24153 -20.23711 -18.64939 -18.44464 -18.01906 -17.40175 -17.10870 -17.02870 -16.49925 -16.15049 -15.70407 -15.15268 -14.83414 -14.54969 -14.35295 -14.11269 -14.00197 -13.52685 -13.47740 -13.28394 -13.09201 -12.91031 -12.69385 -12.48337 -12.25198 -12.07732 -11.95656 -11.77370 -11.18010 -11.16447 -11.08292 -11.06037 -10.94279 -10.80262 -9.90284 -9.86157 -9.53072 -9.09015 -9.03469 -8.30379 -7.72741 -6.55078 -6.24830 -3.96453 1.25648 1.29938 1.63910 2.30585 2.90054 2.91011 3.06010 3.21689 3.25458 3.28270 3.60704 3.76140 4.16825 4.17317 4.27235 4.42840 4.66406 4.70011 4.71560 4.84105 4.87165 4.94403 4.97993 5.10521 5.20826 5.34321 5.43008 5.50326 5.58771 5.64551 5.78515 5.88900 5.91749 5.95020 6.05250 6.18507 6.32454 6.48807 6.86614 7.27116 7.31612 7.51296 7.56228 8.31497 8.41169 9.20406 10.82500 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.054987 B = 0.001422 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.091532 B =19689.077014 C =20005.467973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.075 3.925 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.056 6.056 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.497 6.497 13 N -0.680 5.680 14 C 0.125 3.875 15 C -0.082 4.082 16 C -0.127 4.127 17 C 0.106 3.894 18 O -0.314 6.314 19 C 0.061 3.939 20 C -0.112 4.112 21 C -0.111 4.111 22 C 0.479 3.521 23 O -0.512 6.512 24 O -0.519 6.519 25 C -0.189 4.189 26 C -0.112 4.112 27 H 0.270 0.730 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.409 0.591 31 H 0.145 0.855 32 H 0.134 0.866 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.412 0.588 40 H 0.128 0.872 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.374 -30.934 1.981 32.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.170 5.830 10 C -0.305 4.305 11 C 0.318 3.682 12 O -0.370 6.370 13 N -0.327 5.327 14 C 0.030 3.970 15 C -0.102 4.102 16 C -0.147 4.147 17 C 0.060 3.940 18 O -0.228 6.228 19 C -0.014 4.014 20 C -0.149 4.149 21 C -0.148 4.148 22 C 0.322 3.678 23 O -0.399 6.399 24 O -0.331 6.331 25 C -0.209 4.209 26 C -0.133 4.133 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.112 0.888 30 H 0.244 0.756 31 H 0.163 0.837 32 H 0.152 0.848 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.271 0.729 40 H 0.146 0.854 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.967 -30.792 1.753 31.619 hybrid contribution 2.397 0.769 0.169 2.523 sum 9.364 -30.022 1.922 31.507 Atomic orbital electron populations 1.70002 1.05966 1.27659 1.46583 1.24984 0.95023 0.99032 0.94424 0.86219 0.79245 0.81193 0.78818 1.19905 1.20776 1.19924 1.22818 0.94897 0.91576 1.59343 0.90895 1.85422 1.04491 0.96309 1.96760 1.23545 1.06945 0.94688 1.05289 1.20527 0.86534 0.86286 0.74834 1.90722 1.15216 1.85244 1.45771 1.43667 1.10781 1.03787 1.74485 1.17715 0.96890 0.84255 0.98144 1.21101 0.95804 0.96428 0.96861 1.20340 1.01553 0.90217 1.02553 1.18902 0.93811 0.83906 0.97338 1.86048 1.53178 1.13976 1.69623 1.22664 0.95574 0.86488 0.96708 1.21314 1.00511 0.90551 1.02547 1.21194 1.01230 0.88060 1.04349 1.23366 0.82192 0.86451 0.75842 1.90771 1.25672 1.86985 1.36489 1.84524 1.58850 1.19173 1.70551 1.20936 0.98349 0.97562 1.04014 1.20654 1.01356 0.91733 0.99565 0.92060 0.88906 0.88757 0.75596 0.83693 0.84838 0.91783 0.91733 0.89601 0.89651 0.87115 0.87077 0.72853 0.85395 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.84 13.22 55.49 0.73 -25.10 16 2 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.09 29.55 -169.99 -5.02 16.07 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.04 9.50 30.94 0.29 -14.75 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.49 20.57 -107.50 -2.21 -3.70 16 10 C -0.15 -2.97 6.16 36.00 0.22 -2.75 16 11 C 0.53 9.58 7.59 -10.99 -0.08 9.49 16 12 O -0.50 -10.84 13.55 5.54 0.08 -10.76 16 13 N -0.68 -9.16 5.35 -9.83 -0.05 -9.21 16 14 C 0.12 1.68 6.28 -83.62 -0.53 1.15 16 15 C -0.08 -1.19 8.65 -39.41 -0.34 -1.53 16 16 C -0.13 -1.65 9.98 -39.45 -0.39 -2.04 16 17 C 0.11 1.22 6.69 -39.22 -0.26 0.96 16 18 O -0.31 -3.30 10.14 -19.63 -0.20 -3.50 16 19 C 0.06 0.39 4.74 37.16 0.18 0.56 16 20 C -0.11 -0.64 4.87 -26.73 -0.13 -0.77 16 21 C -0.11 -0.38 5.81 -27.88 -0.16 -0.54 16 22 C 0.48 2.78 8.33 36.01 0.30 3.08 16 23 O -0.51 -4.94 16.74 -18.75 -0.31 -5.25 16 24 O -0.52 -2.00 13.42 -39.26 -0.53 -2.52 16 25 C -0.19 -1.88 9.03 -39.45 -0.36 -2.24 16 26 C -0.11 -1.20 9.96 -39.41 -0.39 -1.60 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 29 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 30 H 0.41 4.00 8.82 -40.82 -0.36 3.64 16 31 H 0.15 2.38 6.41 -52.49 -0.34 2.04 16 32 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.06 0.31 7.67 -51.93 -0.40 -0.09 16 34 H 0.06 0.33 7.65 -51.93 -0.40 -0.06 16 35 H 0.09 0.61 8.10 -51.93 -0.42 0.19 16 36 H 0.08 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 38 H 0.11 0.19 8.14 -51.93 -0.42 -0.23 16 39 H 0.41 0.09 9.10 45.56 0.41 0.50 16 40 H 0.13 0.89 6.29 -52.49 -0.33 0.56 16 41 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 373.88 15.07 5.63 5.63 Total: -1.00 -37.47 373.88 -7.96 -45.44 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.33 Total: 1.87 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -1.75 Total: -8.97 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: 0.68 Total: -34.31 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -0.96 Total: -22.03 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: -1.49 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -37.47 -7.96 -45.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739090957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.623 kcal (2) G-P(sol) polarization free energy of solvation -37.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds