Wall clock time and date at job start Tue Mar 31 2020 22:13:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86801 * 119.99946 * 2 1 4 4 H 1.48502 * 109.47410 * 240.00331 * 3 2 1 5 5 H 1.48502 * 109.47458 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47081 * 120.00175 * 3 2 1 7 7 C 1.38793 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00369 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99937 * 359.97438 * 7 2 1 10 10 C 1.81002 * 100.00178 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47130 * 179.97438 * 10 9 7 12 12 O 1.21296 * 120.00273 * 359.97438 * 11 10 9 13 13 N 1.34780 * 120.00055 * 179.97438 * 11 10 9 14 14 C 1.40106 * 119.99966 * 185.27709 * 13 11 10 15 15 C 1.38845 * 120.01660 * 33.29894 * 14 13 11 16 16 C 1.38091 * 119.98490 * 180.02562 * 15 14 13 17 17 C 1.38727 * 120.01470 * 0.02562 * 16 15 14 18 18 O 1.35965 * 119.98787 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00323 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.46860 * 180.02562 * 19 18 17 21 21 C 1.52999 * 109.46691 * 179.97438 * 20 19 18 22 22 C 1.50703 * 109.47100 * 180.02562 * 21 20 19 23 23 O 1.20820 * 120.00074 * 0.02562 * 22 21 20 24 24 O 1.34229 * 119.99719 * 179.97438 * 22 21 20 25 25 C 1.38728 * 120.02920 * 0.23417 * 17 16 15 26 26 C 1.38092 * 120.01107 * 359.49289 * 25 17 16 27 27 H 0.97007 * 120.00088 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.46911 * 59.99631 * 10 9 7 29 29 H 1.09003 * 109.46791 * 300.00133 * 10 9 7 30 30 H 0.97005 * 119.99531 * 5.27094 * 13 11 10 31 31 H 1.07992 * 120.00967 * 359.97438 * 15 14 13 32 32 H 1.07997 * 119.99325 * 179.97438 * 16 15 14 33 33 H 1.08998 * 109.46743 * 299.99874 * 19 18 17 34 34 H 1.08999 * 109.46602 * 60.00280 * 19 18 17 35 35 H 1.08990 * 109.47598 * 299.99972 * 20 19 18 36 36 H 1.08999 * 109.47388 * 60.00634 * 20 19 18 37 37 H 1.09004 * 109.47349 * 300.00240 * 21 20 19 38 38 H 1.09001 * 109.47157 * 60.00186 * 21 20 19 39 39 H 0.96706 * 116.99600 * 179.97438 * 24 22 21 40 40 H 1.07992 * 119.98975 * 179.72137 * 25 17 16 41 41 H 1.08006 * 120.00512 * 180.23725 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6965 -1.2125 5 1 1.2853 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9874 -5.3026 0.0001 12 8 0.7910 -5.5023 0.0010 13 7 2.8442 -6.3431 -0.0003 14 6 2.3567 -7.6519 -0.1113 15 6 1.2220 -7.9085 -0.8692 16 6 0.7418 -9.1987 -0.9778 17 6 1.3926 -10.2382 -0.3293 18 8 0.9190 -11.5082 -0.4361 19 6 1.6382 -12.5294 0.2582 20 6 0.9613 -13.8809 0.0211 21 6 1.7317 -14.9743 0.7640 22 6 1.0654 -16.3056 0.5300 23 8 0.0763 -16.3731 -0.1605 24 8 1.5716 -17.4166 1.0879 25 6 2.5232 -9.9817 0.4325 26 6 3.0077 -8.6928 0.5373 27 1 -0.4850 0.8401 -0.0004 28 1 3.1245 -3.7312 0.8894 29 1 3.1245 -3.7312 -0.8905 30 1 3.7983 -6.1856 0.0762 31 1 0.7146 -7.0993 -1.3731 32 1 -0.1410 -9.3984 -1.5669 33 1 2.6631 -12.5670 -0.1109 34 1 1.6441 -12.3078 1.3255 35 1 -0.0637 -13.8436 0.3898 36 1 0.9557 -14.1022 -1.0462 37 1 2.7566 -15.0114 0.3949 38 1 1.7377 -14.7532 1.8314 39 1 1.1094 -18.2471 0.9094 40 1 3.0267 -10.7907 0.9407 41 1 3.8902 -8.4937 1.1273 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739090957.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:25 Heat of formation + Delta-G solvation = -173.139557 kcal Electronic energy + Delta-G solvation = -24538.859855 eV Core-core repulsion = 20509.069200 eV Total energy + Delta-G solvation = -4029.790655 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.62849 -41.24396 -40.54353 -38.42288 -37.17911 -35.63283 -34.74619 -34.57871 -32.04381 -31.53356 -29.45168 -28.29183 -27.61638 -24.82157 -23.48167 -23.20574 -21.70994 -21.37806 -19.90032 -19.23571 -19.03974 -18.53476 -17.95505 -17.55246 -17.48383 -16.87235 -16.77394 -16.66101 -16.30763 -16.12516 -15.34427 -14.98087 -14.89887 -14.60500 -14.53843 -14.41672 -14.02004 -13.77656 -13.73000 -13.42275 -13.18051 -13.13941 -12.85956 -12.67044 -12.61565 -12.54156 -12.41586 -11.83622 -11.75839 -11.65735 -11.64495 -11.12484 -11.07810 -10.79057 -10.28533 -9.98233 -8.73339 -8.63712 -8.34078 -6.12571 0.30481 0.35515 1.22960 1.25202 1.44889 1.46464 1.55741 1.56471 1.90568 2.18337 2.27774 2.51159 2.80920 3.00448 3.29837 3.76611 3.81141 3.90532 3.91761 3.93328 4.08681 4.27068 4.29265 4.41034 4.43272 4.43678 4.49120 4.56714 4.61248 4.71165 4.90901 5.01281 5.03799 5.18327 5.31321 5.35567 5.42415 5.47403 5.65268 5.85739 6.20084 6.41116 6.49840 6.99639 7.07317 7.14062 8.74805 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.054987 B = 0.001422 C = 0.001399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 509.091532 B =19689.077014 C =20005.467973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.548 4.548 8 H 0.085 0.915 9 S -0.150 6.150 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.545 6.545 13 N -0.655 5.655 14 C 0.097 3.903 15 C -0.103 4.103 16 C -0.148 4.148 17 C 0.110 3.890 18 O -0.334 6.334 19 C 0.053 3.947 20 C -0.108 4.108 21 C -0.104 4.104 22 C 0.481 3.519 23 O -0.561 6.561 24 O -0.514 6.514 25 C -0.180 4.180 26 C -0.096 4.096 27 H 0.271 0.729 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.429 0.571 31 H 0.113 0.887 32 H 0.129 0.871 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.427 0.573 40 H 0.170 0.830 41 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.435 -32.409 3.534 35.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.078 5.922 10 C -0.279 4.279 11 C 0.320 3.680 12 O -0.421 6.421 13 N -0.303 5.303 14 C 0.003 3.997 15 C -0.124 4.124 16 C -0.168 4.168 17 C 0.064 3.936 18 O -0.248 6.248 19 C -0.021 4.021 20 C -0.146 4.146 21 C -0.141 4.141 22 C 0.326 3.674 23 O -0.452 6.452 24 O -0.328 6.328 25 C -0.198 4.198 26 C -0.116 4.116 27 H 0.080 0.920 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.268 0.732 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.288 0.712 40 H 0.188 0.812 41 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.098 -32.334 3.319 34.346 hybrid contribution 1.166 0.919 -0.305 1.515 sum 12.263 -31.415 3.014 33.858 Atomic orbital electron populations 1.70178 1.08018 1.28677 1.47942 1.26114 0.95918 1.03310 0.93686 0.85013 0.77804 0.75704 0.79536 1.18639 1.20541 1.18566 1.23184 0.95442 0.91907 1.59004 0.89673 1.85626 1.10291 0.99239 1.97089 1.23358 1.03800 0.93398 1.07375 1.20284 0.86252 0.86716 0.74759 1.90719 1.17275 1.85750 1.48329 1.43260 1.11177 1.02997 1.72852 1.17895 0.97513 0.84569 0.99703 1.20929 0.96936 0.96279 0.98237 1.20354 1.02162 0.90510 1.03737 1.18969 0.93933 0.84017 0.96687 1.86041 1.54329 1.14134 1.70338 1.23001 0.96353 0.85132 0.97632 1.21237 1.00012 0.91506 1.01830 1.21249 1.01662 0.85616 1.05563 1.23867 0.81366 0.87545 0.74655 1.90763 1.27943 1.87710 1.38823 1.84497 1.58716 1.19671 1.69888 1.21376 0.97259 0.98420 1.02780 1.21019 1.01530 0.90891 0.98136 0.92014 0.86518 0.86671 0.73205 0.86930 0.85275 0.89206 0.89686 0.91663 0.91372 0.84312 0.84537 0.71173 0.81236 0.81873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.78 13.22 21.65 0.29 -55.50 16 2 C 0.01 0.82 5.49 84.86 0.47 1.29 16 3 Si 1.00 43.05 29.55 68.60 2.03 45.07 16 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 7 C -0.55 -30.78 9.50 67.95 0.65 -30.14 16 8 H 0.09 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.18 20.57 -56.49 -1.16 -9.34 16 10 C -0.13 -4.87 6.16 71.23 0.44 -4.43 16 11 C 0.53 19.29 7.59 87.65 0.67 19.95 16 12 O -0.54 -24.91 13.55 -3.08 -0.04 -24.95 16 13 N -0.65 -16.65 5.35 -303.39 -1.62 -18.27 16 14 C 0.10 2.50 6.28 38.11 0.24 2.74 16 15 C -0.10 -3.15 8.65 22.38 0.19 -2.96 16 16 C -0.15 -3.97 9.98 22.35 0.22 -3.75 16 17 C 0.11 2.36 6.69 22.50 0.15 2.51 16 18 O -0.33 -6.51 10.14 -93.16 -0.94 -7.45 16 19 C 0.05 0.50 4.74 71.98 0.34 0.84 16 20 C -0.11 -1.08 4.87 30.59 0.15 -0.93 16 21 C -0.10 -0.39 5.81 29.85 0.17 -0.22 16 22 C 0.48 4.88 8.33 71.24 0.59 5.48 16 23 O -0.56 -10.91 16.74 21.98 0.37 -10.54 16 24 O -0.51 -2.91 13.42 -51.41 -0.69 -3.60 16 25 C -0.18 -2.84 9.03 22.35 0.20 -2.64 16 26 C -0.10 -1.69 9.96 22.38 0.22 -1.46 16 27 H 0.27 15.45 8.31 -92.70 -0.77 14.67 16 28 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16 29 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 30 H 0.43 7.10 8.82 -92.70 -0.82 6.28 16 31 H 0.11 4.10 6.41 -2.91 -0.02 4.08 16 32 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 33 H 0.09 0.42 7.67 -2.39 -0.02 0.40 16 34 H 0.08 0.48 7.65 -2.39 -0.02 0.47 16 35 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 36 H 0.07 0.91 8.10 -2.39 -0.02 0.89 16 37 H 0.14 -0.19 8.14 -2.39 -0.02 -0.21 16 38 H 0.14 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.43 -0.44 9.10 -74.05 -0.67 -1.12 16 40 H 0.17 1.26 6.29 -2.91 -0.02 1.24 16 41 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -87.33 373.88 2.52 -84.81 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -0.40 Total: 13.50 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 4.70 Total: -13.74 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -1.34 Total: -73.77 kcal Atomic # 8 Polarization: -45.24 SS G_CDS: -1.31 Total: -46.55 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -8.18 SS G_CDS: -1.16 Total: -9.34 kcal Total: -87.33 2.52 -84.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739090957.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.329 kcal (2) G-P(sol) polarization free energy of solvation -87.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds