Wall clock time and date at job start Tue Mar 31 2020 21:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 120.00016 * 2 1 4 4 H 1.48498 * 109.46944 * 239.99449 * 3 2 1 5 5 H 1.48495 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47054 * 119.99434 * 3 2 1 7 7 C 1.38802 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00194 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99869 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47051 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00116 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99854 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00005 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47233 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47459 * 55.00457 * 15 14 13 17 17 C 1.52998 * 109.47228 * 175.00408 * 15 14 13 18 18 C 1.50700 * 109.47263 * 185.00098 * 17 15 14 19 19 C 1.38268 * 119.94492 * 269.72465 * 18 17 15 20 20 C 1.38145 * 120.05848 * 179.72214 * 19 18 17 21 21 C 1.38737 * 119.94074 * 0.57432 * 20 19 18 22 22 O 1.35894 * 120.05431 * 179.68114 * 21 20 19 23 23 C 1.38736 * 119.88790 * 359.69800 * 21 20 19 24 24 C 1.38142 * 119.94170 * 0.02562 * 23 21 20 25 25 C 1.50706 * 109.47215 * 295.00291 * 15 14 13 26 26 O 1.20825 * 119.99859 * 359.97438 * 25 15 14 27 27 O 1.34224 * 120.00295 * 180.02562 * 25 15 14 28 28 H 0.96999 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46862 * 60.00310 * 10 9 7 30 30 H 1.08999 * 109.46708 * 300.00464 * 10 9 7 31 31 H 0.96994 * 120.00142 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.47155 * 60.00133 * 14 13 11 33 33 H 1.08999 * 109.47453 * 300.00569 * 14 13 11 34 34 H 1.09004 * 109.46935 * 304.99472 * 17 15 14 35 35 H 1.08997 * 109.47353 * 64.99799 * 17 15 14 36 36 H 1.08001 * 119.96802 * 359.97438 * 19 18 17 37 37 H 1.08000 * 120.02597 * 180.24898 * 20 19 18 38 38 H 0.96693 * 114.00182 * 270.02051 * 22 21 20 39 39 H 1.07998 * 120.02610 * 179.97438 * 23 21 20 40 40 H 1.08006 * 119.96440 * 179.97438 * 24 23 21 41 41 H 0.96700 * 117.00196 * 179.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0022 14 6 2.3304 -7.7151 0.0024 15 6 3.5024 -8.6985 0.0036 16 1 4.1590 -8.4803 0.8458 17 6 2.9693 -10.1271 0.1294 18 6 4.1255 -11.0856 0.2541 19 6 4.6831 -11.6458 -0.8804 20 6 5.7468 -12.5203 -0.7691 21 6 6.2478 -12.8455 0.4831 22 8 7.2898 -13.7105 0.5956 23 6 5.6829 -12.2864 1.6203 24 6 4.6231 -11.4081 1.5032 25 6 4.2742 -8.5619 -1.2836 26 8 3.9226 -7.7605 -2.1167 27 8 5.3516 -9.3312 -1.5051 28 1 -0.4850 0.8400 -0.0004 29 1 3.1238 -3.7310 0.8926 30 1 3.1252 -3.7317 -0.8874 31 1 3.8009 -6.1835 0.0032 32 1 1.7221 -7.8754 -0.8877 33 1 1.7215 -7.8750 0.8921 34 1 2.3378 -10.2026 1.0146 35 1 2.3849 -10.3761 -0.7563 36 1 4.2894 -11.3963 -1.8546 37 1 6.1845 -12.9544 -1.6558 38 1 7.0249 -14.6366 0.6790 39 1 6.0708 -12.5383 2.5962 40 1 4.1828 -10.9729 2.3882 41 1 5.8140 -9.2078 -2.3454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739093130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:33 Heat of formation + Delta-G solvation = -150.658590 kcal Electronic energy + Delta-G solvation = -25816.513452 eV Core-core repulsion = 21787.697646 eV Total energy + Delta-G solvation = -4028.815807 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.04093 -39.94949 -39.01067 -37.52122 -36.55595 -35.43466 -33.34757 -32.39821 -31.36717 -30.43219 -28.87272 -25.77086 -25.38645 -24.72053 -23.22069 -21.99297 -20.80852 -20.18883 -18.82532 -18.39578 -17.81841 -17.27688 -16.72779 -16.22826 -16.00323 -15.92296 -15.63800 -15.39592 -14.97239 -14.77680 -14.29342 -13.96796 -13.89642 -13.82162 -13.39437 -13.17700 -13.01743 -12.76004 -12.54136 -12.37527 -12.20586 -11.90117 -11.70061 -11.66197 -11.48367 -11.01561 -11.01517 -10.85171 -10.74386 -10.69409 -9.79651 -9.39143 -9.30039 -9.03538 -8.86536 -8.83780 -8.20557 -6.46298 -6.18600 -3.88779 0.81067 1.00356 1.92639 2.69310 3.02321 3.15697 3.22678 3.25703 3.29727 3.34086 3.71553 3.82487 4.05649 4.23508 4.36540 4.52711 4.58573 4.62694 4.66186 4.94260 4.98148 5.06005 5.16302 5.19575 5.29233 5.32889 5.49971 5.52183 5.62071 5.65539 5.80311 5.90155 5.94539 6.05397 6.19175 6.20170 6.22882 6.42767 6.59056 7.23780 7.62131 7.62337 7.70302 8.38100 8.64462 9.26495 10.88773 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.001878 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.547635 B =14908.204515 C =15110.163658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.536 3.464 12 O -0.519 6.519 13 N -0.733 5.733 14 C 0.135 3.865 15 C -0.087 4.087 16 H 0.117 0.883 17 C -0.069 4.069 18 C -0.095 4.095 19 C -0.062 4.062 20 C -0.148 4.148 21 C 0.103 3.897 22 O -0.502 6.502 23 C -0.149 4.149 24 C -0.094 4.094 25 C 0.473 3.527 26 O -0.496 6.496 27 O -0.506 6.506 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.396 0.604 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.389 0.611 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.319 -30.014 1.243 32.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.322 3.678 12 O -0.393 6.393 13 N -0.387 5.387 14 C 0.011 3.989 15 C -0.106 4.106 16 H 0.135 0.865 17 C -0.107 4.107 18 C -0.095 4.095 19 C -0.080 4.080 20 C -0.166 4.166 21 C 0.059 3.941 22 O -0.312 6.312 23 C -0.168 4.168 24 C -0.112 4.112 25 C 0.314 3.686 26 O -0.382 6.382 27 O -0.317 6.317 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.229 0.771 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.244 0.756 39 H 0.144 0.856 40 H 0.145 0.855 41 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 11.162 -29.554 1.334 31.619 hybrid contribution 2.704 0.998 -0.580 2.940 sum 13.866 -28.556 0.754 31.753 Atomic orbital electron populations 1.70010 1.05930 1.27519 1.46854 1.24989 0.95032 0.98992 0.94570 0.86225 0.79233 0.81261 0.78785 1.19962 1.20816 1.19957 1.22836 0.94891 0.91710 1.58960 0.90999 1.85364 1.04942 0.96239 1.96715 1.23523 1.06564 0.95366 1.04908 1.20232 0.86416 0.86178 0.74932 1.90698 1.15293 1.85593 1.47705 1.45845 1.09824 1.05100 1.77957 1.21166 0.93768 0.80292 1.03674 1.21472 0.97176 0.97564 0.94414 0.86511 1.20504 0.95784 0.89494 1.04941 1.19686 0.97930 0.98498 0.93421 1.20769 0.94853 0.94379 0.97996 1.21343 0.97354 1.00824 0.97083 1.18508 0.88636 0.94520 0.92440 1.84831 1.30639 1.20024 1.95722 1.21369 0.97027 0.99949 0.98414 1.20922 0.95953 0.97224 0.97103 1.23366 0.78871 0.77372 0.88972 1.90834 1.66832 1.34582 1.45996 1.84756 1.41387 1.60588 1.45012 0.92157 0.89283 0.89207 0.77084 0.90466 0.89830 0.88480 0.89768 0.86065 0.85699 0.75557 0.85581 0.85483 0.73672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.46 13.22 55.49 0.73 -25.73 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.70 29.55 -169.99 -5.02 16.68 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -15.54 9.50 30.94 0.29 -15.24 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.21 6.16 36.00 0.22 -2.98 16 11 C 0.54 10.35 7.85 -10.99 -0.09 10.26 16 12 O -0.52 -11.97 15.86 5.55 0.09 -11.88 16 13 N -0.73 -10.20 4.81 -60.30 -0.29 -10.49 16 14 C 0.14 1.49 4.63 -4.04 -0.02 1.47 16 15 C -0.09 -0.65 2.36 -91.77 -0.22 -0.87 16 16 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 17 C -0.07 -0.40 4.83 -27.88 -0.13 -0.53 16 18 C -0.10 -0.61 4.54 -104.60 -0.47 -1.08 16 19 C -0.06 -0.40 6.88 -39.60 -0.27 -0.67 16 20 C -0.15 -0.99 9.99 -39.43 -0.39 -1.38 16 21 C 0.10 0.75 6.71 -39.21 -0.26 0.49 16 22 O -0.50 -3.33 13.50 -19.41 -0.26 -3.59 16 23 C -0.15 -1.02 9.99 -39.43 -0.39 -1.41 16 24 C -0.09 -0.59 9.69 -39.61 -0.38 -0.97 16 25 C 0.47 4.25 7.20 36.01 0.26 4.51 16 26 O -0.50 -6.49 16.05 -18.75 -0.30 -6.79 16 27 O -0.51 -3.31 9.32 -39.24 -0.37 -3.67 16 28 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 29 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 30 H 0.09 1.79 8.14 -51.92 -0.42 1.37 16 31 H 0.40 4.65 8.16 -40.82 -0.33 4.31 16 32 H 0.08 0.99 7.96 -51.93 -0.41 0.58 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.42 8.08 -51.93 -0.42 0.00 16 35 H 0.08 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.12 0.68 7.60 -52.49 -0.40 0.28 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.39 0.70 9.06 45.56 0.41 1.11 16 39 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 40 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 41 H 0.40 1.40 9.10 45.56 0.41 1.82 16 LS Contribution 370.92 15.07 5.59 5.59 Total: -1.00 -39.33 370.92 -7.66 -46.99 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.66 Total: 3.14 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -1.96 Total: -6.39 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.44 Total: -36.22 kcal Atomic # 8 Polarization: -25.09 SS G_CDS: -0.84 Total: -25.93 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -39.33 -7.66 -46.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739093130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.666 kcal (2) G-P(sol) polarization free energy of solvation -39.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds