Wall clock time and date at job start Tue Mar 31 2020 21:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86805 * 120.00016 * 2 1 4 4 H 1.48498 * 109.46944 * 239.99449 * 3 2 1 5 5 H 1.48495 * 109.47034 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47054 * 119.99434 * 3 2 1 7 7 C 1.38802 * 120.00075 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00194 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99745 * 0.02562 * 7 2 1 10 10 C 1.81008 * 99.99869 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47051 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00116 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99854 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00005 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47233 * 180.02562 * 14 13 11 16 16 H 1.09000 * 109.47459 * 55.00457 * 15 14 13 17 17 C 1.52998 * 109.47228 * 175.00408 * 15 14 13 18 18 C 1.50700 * 109.47263 * 185.00098 * 17 15 14 19 19 C 1.38268 * 119.94492 * 269.72465 * 18 17 15 20 20 C 1.38145 * 120.05848 * 179.72214 * 19 18 17 21 21 C 1.38737 * 119.94074 * 0.57432 * 20 19 18 22 22 O 1.35894 * 120.05431 * 179.68114 * 21 20 19 23 23 C 1.38736 * 119.88790 * 359.69800 * 21 20 19 24 24 C 1.38142 * 119.94170 * 0.02562 * 23 21 20 25 25 C 1.50706 * 109.47215 * 295.00291 * 15 14 13 26 26 O 1.20825 * 119.99859 * 359.97438 * 25 15 14 27 27 O 1.34224 * 120.00295 * 180.02562 * 25 15 14 28 28 H 0.96999 * 119.99902 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.46862 * 60.00310 * 10 9 7 30 30 H 1.08999 * 109.46708 * 300.00464 * 10 9 7 31 31 H 0.96994 * 120.00142 * 0.02562 * 13 11 10 32 32 H 1.08999 * 109.47155 * 60.00133 * 14 13 11 33 33 H 1.08999 * 109.47453 * 300.00569 * 14 13 11 34 34 H 1.09004 * 109.46935 * 304.99472 * 17 15 14 35 35 H 1.08997 * 109.47353 * 64.99799 * 17 15 14 36 36 H 1.08001 * 119.96802 * 359.97438 * 19 18 17 37 37 H 1.08000 * 120.02597 * 180.24898 * 20 19 18 38 38 H 0.96693 * 114.00182 * 270.02051 * 22 21 20 39 39 H 1.07998 * 120.02610 * 179.97438 * 23 21 20 40 40 H 1.08006 * 119.96440 * 179.97438 * 24 23 21 41 41 H 0.96700 * 117.00196 * 179.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8915 0.0021 11 6 1.9874 -5.3027 0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0022 14 6 2.3304 -7.7151 0.0024 15 6 3.5024 -8.6985 0.0036 16 1 4.1590 -8.4803 0.8458 17 6 2.9693 -10.1271 0.1294 18 6 4.1255 -11.0856 0.2541 19 6 4.6831 -11.6458 -0.8804 20 6 5.7468 -12.5203 -0.7691 21 6 6.2478 -12.8455 0.4831 22 8 7.2898 -13.7105 0.5956 23 6 5.6829 -12.2864 1.6203 24 6 4.6231 -11.4081 1.5032 25 6 4.2742 -8.5619 -1.2836 26 8 3.9226 -7.7605 -2.1167 27 8 5.3516 -9.3312 -1.5051 28 1 -0.4850 0.8400 -0.0004 29 1 3.1238 -3.7310 0.8926 30 1 3.1252 -3.7317 -0.8874 31 1 3.8009 -6.1835 0.0032 32 1 1.7221 -7.8754 -0.8877 33 1 1.7215 -7.8750 0.8921 34 1 2.3378 -10.2026 1.0146 35 1 2.3849 -10.3761 -0.7563 36 1 4.2894 -11.3963 -1.8546 37 1 6.1845 -12.9544 -1.6558 38 1 7.0249 -14.6366 0.6790 39 1 6.0708 -12.5383 2.5962 40 1 4.1828 -10.9729 2.3882 41 1 5.8140 -9.2078 -2.3454 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739093130.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:32 Heat of formation + Delta-G solvation = -181.012164 kcal Electronic energy + Delta-G solvation = -25817.829682 eV Core-core repulsion = 21787.697646 eV Total energy + Delta-G solvation = -4030.132037 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.76074 -40.52207 -40.34970 -38.03079 -37.30290 -36.31875 -34.58933 -34.32950 -31.81682 -31.51713 -30.01741 -27.69625 -26.36727 -25.51570 -23.67726 -22.57032 -21.84741 -21.22971 -19.80579 -19.27758 -19.08056 -18.04484 -17.75029 -17.55046 -16.87965 -16.67923 -16.58623 -16.43222 -16.30607 -16.02554 -15.71010 -14.89605 -14.77508 -14.57802 -14.42309 -14.28538 -13.98511 -13.96164 -13.47826 -13.28092 -13.17267 -12.89656 -12.85526 -12.71531 -12.63186 -12.40738 -12.31751 -12.10236 -11.74168 -11.46072 -11.26329 -11.13104 -10.97940 -10.29137 -10.12236 -9.76485 -9.31921 -8.66659 -8.34486 -6.12697 0.34332 0.54046 1.22636 1.26649 1.43741 1.46175 1.56245 1.62210 2.09848 2.25031 2.28996 2.78941 2.99221 3.31472 3.32874 3.44046 3.86021 3.93137 4.04308 4.07128 4.12887 4.18403 4.28162 4.39953 4.47160 4.49484 4.55787 4.70932 4.77001 4.90381 4.95363 5.10724 5.19975 5.38448 5.41320 5.45641 5.59282 5.65199 5.74223 6.01991 6.19511 6.43470 6.92077 7.02264 7.06351 7.21739 8.74498 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.001878 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.547635 B =14908.204515 C =15110.163658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.549 4.549 8 H 0.081 0.919 9 S -0.147 6.147 10 C -0.131 4.131 11 C 0.537 3.463 12 O -0.564 6.564 13 N -0.710 5.710 14 C 0.132 3.868 15 C -0.075 4.075 16 H 0.139 0.861 17 C -0.064 4.064 18 C -0.100 4.100 19 C -0.066 4.066 20 C -0.158 4.158 21 C 0.093 3.907 22 O -0.517 6.517 23 C -0.162 4.162 24 C -0.095 4.095 25 C 0.481 3.519 26 O -0.543 6.543 27 O -0.496 6.496 28 H 0.272 0.728 29 H 0.112 0.888 30 H 0.101 0.899 31 H 0.409 0.591 32 H 0.058 0.942 33 H 0.096 0.904 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.407 0.593 39 H 0.134 0.866 40 H 0.145 0.855 41 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.528 -30.732 1.964 34.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.697 4.697 8 H 0.099 0.901 9 S 0.080 5.920 10 C -0.282 4.282 11 C 0.323 3.677 12 O -0.442 6.442 13 N -0.362 5.362 14 C 0.009 3.991 15 C -0.094 4.094 16 H 0.156 0.844 17 C -0.102 4.102 18 C -0.100 4.100 19 C -0.084 4.084 20 C -0.176 4.176 21 C 0.048 3.952 22 O -0.330 6.330 23 C -0.180 4.180 24 C -0.113 4.113 25 C 0.324 3.676 26 O -0.433 6.433 27 O -0.309 6.309 28 H 0.081 0.919 29 H 0.130 0.870 30 H 0.119 0.881 31 H 0.245 0.755 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.266 0.734 39 H 0.152 0.848 40 H 0.163 0.837 41 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 13.440 -30.349 2.058 33.256 hybrid contribution 2.118 1.004 -0.820 2.483 sum 15.558 -29.346 1.238 33.237 Atomic orbital electron populations 1.70175 1.07926 1.28692 1.47846 1.26135 0.96001 1.03299 0.93700 0.85001 0.77817 0.75687 0.79465 1.18859 1.20244 1.18543 1.23177 0.95331 0.92102 1.59093 0.90051 1.85514 1.10357 0.99062 1.97038 1.23372 1.03649 0.94698 1.06491 1.19943 0.86188 0.86540 0.75068 1.90684 1.17147 1.86063 1.50303 1.45626 1.09927 1.05260 1.75433 1.21343 0.95310 0.79096 1.03386 1.21413 0.95988 0.97598 0.94432 0.84362 1.20502 0.95786 0.87848 1.06019 1.19737 0.98063 0.98723 0.93484 1.20895 0.94745 0.94308 0.98433 1.21477 0.97693 1.01143 0.97300 1.18699 0.88748 0.94852 0.92857 1.84772 1.31021 1.21465 1.95746 1.21558 0.97454 1.00277 0.98710 1.21156 0.95586 0.96811 0.97729 1.23578 0.78821 0.76427 0.88725 1.90832 1.68143 1.36734 1.47622 1.84728 1.40542 1.59588 1.46031 0.91949 0.87013 0.88059 0.75489 0.92348 0.88598 0.86520 0.89707 0.85545 0.85067 0.73401 0.84846 0.83692 0.71961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.50 13.22 21.65 0.29 -56.22 16 2 C 0.01 0.78 5.49 84.86 0.47 1.25 16 3 Si 1.00 44.16 29.55 68.60 2.03 46.19 16 4 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.55 -31.99 9.50 67.96 0.65 -31.35 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.38 16 9 S -0.15 -8.34 20.57 -56.49 -1.16 -9.50 16 10 C -0.13 -5.42 6.16 71.23 0.44 -4.98 16 11 C 0.54 20.51 7.85 87.66 0.69 21.20 16 12 O -0.56 -26.47 15.86 -3.06 -0.05 -26.52 16 13 N -0.71 -18.66 4.81 -463.07 -2.23 -20.89 16 14 C 0.13 2.71 4.63 86.38 0.40 3.11 16 15 C -0.08 -0.94 2.36 -11.54 -0.03 -0.96 16 16 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 17 C -0.06 -0.56 4.83 29.85 0.14 -0.42 16 18 C -0.10 -1.02 4.54 -19.85 -0.09 -1.11 16 19 C -0.07 -0.72 6.88 22.25 0.15 -0.57 16 20 C -0.16 -1.88 9.99 22.37 0.22 -1.66 16 21 C 0.09 1.21 6.71 22.51 0.15 1.36 16 22 O -0.52 -6.22 13.50 -92.35 -1.25 -7.46 16 23 C -0.16 -1.90 9.99 22.37 0.22 -1.68 16 24 C -0.09 -0.94 9.69 22.25 0.22 -0.73 16 25 C 0.48 7.73 7.20 71.24 0.51 8.24 16 26 O -0.54 -13.70 16.05 21.97 0.35 -13.35 16 27 O -0.50 -5.38 9.32 -51.35 -0.48 -5.86 16 28 H 0.27 15.65 8.31 -92.71 -0.77 14.87 16 29 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 30 H 0.10 3.95 8.14 -2.40 -0.02 3.93 16 31 H 0.41 8.66 8.16 -92.71 -0.76 7.90 16 32 H 0.06 1.47 7.96 -2.39 -0.02 1.45 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.12 0.62 8.08 -2.38 -0.02 0.60 16 35 H 0.08 0.77 8.08 -2.39 -0.02 0.75 16 36 H 0.13 1.19 7.60 -2.91 -0.02 1.17 16 37 H 0.13 1.29 8.06 -2.91 -0.02 1.27 16 38 H 0.41 0.99 9.06 -74.06 -0.67 0.32 16 39 H 0.13 1.28 8.06 -2.91 -0.02 1.26 16 40 H 0.15 0.85 8.06 -2.91 -0.02 0.83 16 41 H 0.42 2.07 9.10 -74.06 -0.67 1.39 16 Total: -1.00 -87.18 370.92 0.65 -86.54 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -1.00 Total: 15.36 kcal Atomic # 6 Polarization: -12.44 SS G_CDS: 4.14 Total: -8.29 kcal Atomic # 7 Polarization: -75.17 SS G_CDS: -1.94 Total: -77.11 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -1.42 Total: -53.19 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -1.16 Total: -9.50 kcal Total: -87.18 0.65 -86.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739093130.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.477 kcal (2) G-P(sol) polarization free energy of solvation -87.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds