Wall clock time and date at job start Tue Mar 31 2020 21:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86799 * 119.99854 * 2 1 4 4 H 1.48496 * 109.47341 * 239.99490 * 3 2 1 5 5 H 1.48500 * 109.47234 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47158 * 119.99469 * 3 2 1 7 7 C 1.38800 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00044 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99859 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99982 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46817 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00122 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99753 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00335 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47310 * 180.02562 * 14 13 11 16 16 H 1.08998 * 109.47466 * 305.00456 * 15 14 13 17 17 C 1.53001 * 109.47051 * 185.00048 * 15 14 13 18 18 C 1.50700 * 109.47351 * 174.10915 * 17 15 14 19 19 C 1.38262 * 119.94632 * 91.29585 * 18 17 15 20 20 C 1.38138 * 120.05779 * 180.25733 * 19 18 17 21 21 C 1.38733 * 119.94030 * 359.47202 * 20 19 18 22 22 O 1.35909 * 120.05192 * 180.29845 * 21 20 19 23 23 C 1.38723 * 119.89292 * 0.27229 * 21 20 19 24 24 C 1.38150 * 119.94311 * 0.02562 * 23 21 20 25 25 C 1.50703 * 109.46895 * 65.00781 * 15 14 13 26 26 O 1.20819 * 120.00379 * 62.13102 * 25 15 14 27 27 O 1.34232 * 119.99372 * 242.13247 * 25 15 14 28 28 H 0.96998 * 120.00070 * 0.02562 * 1 2 3 29 29 H 1.08991 * 109.47007 * 60.00225 * 10 9 7 30 30 H 1.09000 * 109.46770 * 299.99981 * 10 9 7 31 31 H 0.97006 * 120.00245 * 0.02562 * 13 11 10 32 32 H 1.09002 * 109.46370 * 60.00369 * 14 13 11 33 33 H 1.08998 * 109.47187 * 300.01119 * 14 13 11 34 34 H 1.09002 * 109.46821 * 54.10562 * 17 15 14 35 35 H 1.09004 * 109.47259 * 294.11279 * 17 15 14 36 36 H 1.08004 * 119.97183 * 0.02562 * 19 18 17 37 37 H 1.07999 * 120.03110 * 179.74177 * 20 19 18 38 38 H 0.96695 * 113.99612 * 89.99994 * 22 21 20 39 39 H 1.08000 * 120.03144 * 180.02562 * 23 21 20 40 40 H 1.07998 * 119.97050 * 179.97438 * 24 23 21 41 41 H 0.96707 * 116.99508 * 179.97438 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1041 1.6964 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 -0.0001 12 8 0.7912 -5.5023 -0.0010 13 7 2.8442 -6.3431 -0.0007 14 6 2.3305 -7.7151 -0.0008 15 6 3.5026 -8.6985 -0.0009 16 1 4.1598 -8.4804 -0.8427 17 6 2.9696 -10.1271 -0.1267 18 6 4.1252 -11.0834 -0.2723 19 6 4.6854 -11.6650 0.8500 20 6 5.7481 -12.5378 0.7196 21 6 6.2462 -12.8391 -0.5397 22 8 7.2878 -13.7022 -0.6711 23 6 5.6790 -12.2584 -1.6646 24 6 4.6203 -11.3814 -1.5284 25 6 4.2733 -8.5615 1.2869 26 8 3.7345 -8.7997 2.3417 27 8 5.5585 -8.1748 1.2619 28 1 -0.4850 0.8400 -0.0004 29 1 3.1245 -3.7313 0.8905 30 1 3.1245 -3.7312 -0.8895 31 1 3.8010 -6.1835 -0.0004 32 1 1.7216 -7.8749 -0.8906 33 1 1.7222 -7.8753 0.8893 34 1 2.3259 -10.1988 -1.0034 35 1 2.3977 -10.3815 0.7657 36 1 4.2942 -11.4338 1.8298 37 1 6.1881 -12.9886 1.5969 38 1 7.0222 -14.6265 -0.7719 39 1 6.0647 -12.4917 -2.6461 40 1 4.1786 -10.9287 -2.4039 41 1 6.0113 -8.1009 2.1132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739093132.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:58:34 Heat of formation + Delta-G solvation = -187.581291 kcal Electronic energy + Delta-G solvation = -25693.555297 eV Core-core repulsion = 21663.138401 eV Total energy + Delta-G solvation = -4030.416895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.79164 -40.61228 -40.46442 -38.15263 -37.20383 -36.57077 -34.58359 -34.35028 -31.95981 -31.61490 -30.09094 -27.69209 -26.47862 -25.63896 -23.79616 -22.70319 -21.82760 -21.19815 -19.84176 -19.35893 -19.32953 -18.03555 -17.81734 -17.51260 -16.87413 -16.83190 -16.66586 -16.47107 -16.38757 -16.16622 -15.75101 -14.88059 -14.84297 -14.65522 -14.48539 -14.40499 -14.10826 -13.95876 -13.50869 -13.34584 -13.16741 -13.07853 -12.86167 -12.78769 -12.63993 -12.53475 -12.43477 -12.13420 -11.74321 -11.54123 -11.38422 -11.12481 -11.02508 -10.28386 -10.23319 -9.96597 -9.48330 -8.66438 -8.34056 -6.12254 0.19528 0.37362 1.12826 1.26114 1.44405 1.46476 1.56175 1.57434 2.02974 2.17873 2.28073 2.63537 2.99969 3.28306 3.31312 3.41413 3.80449 3.84129 3.93306 4.00579 4.04504 4.09318 4.28244 4.34544 4.38967 4.43880 4.50316 4.60734 4.70791 4.80919 4.87883 5.01977 5.07402 5.27798 5.32865 5.42220 5.45790 5.57500 5.60780 5.88526 6.20099 6.37964 6.84567 6.93326 7.07109 7.16322 8.74819 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.026818 B = 0.001885 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1043.822951 B =14848.095999 C =15066.817589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.083 0.917 9 S -0.149 6.149 10 C -0.131 4.131 11 C 0.537 3.463 12 O -0.560 6.560 13 N -0.720 5.720 14 C 0.129 3.871 15 C -0.075 4.075 16 H 0.134 0.866 17 C -0.065 4.065 18 C -0.105 4.105 19 C -0.108 4.108 20 C -0.155 4.155 21 C 0.096 3.904 22 O -0.513 6.513 23 C -0.150 4.150 24 C -0.090 4.090 25 C 0.485 3.515 26 O -0.542 6.542 27 O -0.510 6.510 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.414 0.586 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.125 0.875 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.132 0.868 38 H 0.410 0.590 39 H 0.144 0.856 40 H 0.155 0.845 41 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.987 -28.485 -3.121 32.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.696 4.696 8 H 0.101 0.899 9 S 0.078 5.922 10 C -0.283 4.283 11 C 0.323 3.677 12 O -0.437 6.437 13 N -0.375 5.375 14 C 0.005 3.995 15 C -0.095 4.095 16 H 0.152 0.848 17 C -0.103 4.103 18 C -0.105 4.105 19 C -0.126 4.126 20 C -0.174 4.174 21 C 0.052 3.948 22 O -0.327 6.327 23 C -0.169 4.169 24 C -0.108 4.108 25 C 0.328 3.672 26 O -0.431 6.431 27 O -0.323 6.323 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.251 0.749 32 H 0.120 0.880 33 H 0.080 0.920 34 H 0.143 0.857 35 H 0.101 0.899 36 H 0.136 0.864 37 H 0.150 0.850 38 H 0.269 0.731 39 H 0.162 0.838 40 H 0.172 0.828 41 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 13.854 -28.350 -3.153 31.711 hybrid contribution 2.025 0.846 0.983 2.405 sum 15.879 -27.504 -2.171 31.833 Atomic orbital electron populations 1.70173 1.07945 1.28678 1.47897 1.26127 0.95977 1.03314 0.93742 0.85008 0.77806 0.75719 0.79490 1.18552 1.20419 1.18784 1.23176 0.95371 0.92010 1.58997 0.89877 1.85562 1.10384 0.99168 1.97059 1.23383 1.03692 0.94317 1.06869 1.20020 0.86168 0.86576 0.74950 1.90702 1.17211 1.86039 1.49777 1.45800 1.10338 1.05170 1.76160 1.21418 0.94964 0.78869 1.04204 1.21308 0.96062 0.97520 0.94615 0.84776 1.20563 0.95724 0.87814 1.06189 1.19894 0.98087 0.98959 0.93579 1.21079 0.95983 0.96791 0.98754 1.21533 0.97316 1.00778 0.97746 1.18668 0.88718 0.94861 0.92549 1.84777 1.30691 1.21860 1.95342 1.21674 0.96830 0.99264 0.99083 1.21252 0.95468 0.96631 0.97445 1.23613 0.80503 0.71361 0.91733 1.90731 1.70344 1.47655 1.34416 1.84526 1.25382 1.79548 1.42827 0.91986 0.87557 0.86766 0.74893 0.87978 0.91998 0.85717 0.89934 0.86367 0.85027 0.73127 0.83839 0.82750 0.71376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.84 13.22 21.65 0.29 -55.56 16 2 C 0.01 0.75 5.49 84.86 0.47 1.22 16 3 Si 1.00 43.42 29.55 68.60 2.03 45.45 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 7 C -0.55 -31.15 9.50 67.95 0.65 -30.51 16 8 H 0.08 4.37 7.80 -2.91 -0.02 4.34 16 9 S -0.15 -8.22 20.57 -56.49 -1.16 -9.39 16 10 C -0.13 -5.13 6.16 71.24 0.44 -4.70 16 11 C 0.54 19.33 7.85 87.66 0.69 20.02 16 12 O -0.56 -25.32 15.86 -3.02 -0.05 -25.37 16 13 N -0.72 -17.35 5.35 -463.06 -2.48 -19.83 16 14 C 0.13 2.57 5.03 86.38 0.43 3.01 16 15 C -0.08 -1.04 2.28 -11.54 -0.03 -1.07 16 16 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 17 C -0.07 -0.74 4.78 29.85 0.14 -0.60 16 18 C -0.11 -1.32 4.84 -19.85 -0.10 -1.42 16 19 C -0.11 -1.62 8.93 22.25 0.20 -1.42 16 20 C -0.16 -2.26 9.99 22.36 0.22 -2.03 16 21 C 0.10 1.33 6.70 22.50 0.15 1.48 16 22 O -0.51 -6.22 13.50 -92.53 -1.25 -7.47 16 23 C -0.15 -1.75 9.99 22.36 0.22 -1.52 16 24 C -0.09 -0.93 9.70 22.26 0.22 -0.72 16 25 C 0.48 8.74 5.49 71.24 0.39 9.13 16 26 O -0.54 -13.56 17.34 21.98 0.38 -13.18 16 27 O -0.51 -7.01 13.42 -51.43 -0.69 -7.70 16 28 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 30 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 31 H 0.41 7.55 8.23 -92.70 -0.76 6.79 16 32 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.06 1.54 8.01 -2.39 -0.02 1.52 16 34 H 0.12 0.80 8.09 -2.39 -0.02 0.79 16 35 H 0.08 1.14 7.84 -2.38 -0.02 1.12 16 36 H 0.12 1.93 8.06 -2.91 -0.02 1.90 16 37 H 0.13 1.67 8.06 -2.91 -0.02 1.64 16 38 H 0.41 0.96 9.06 -74.06 -0.67 0.28 16 39 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 41 H 0.42 3.11 9.10 -74.05 -0.67 2.43 16 Total: -1.00 -85.36 378.11 0.15 -85.20 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -1.01 Total: 16.96 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.10 Total: -9.12 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -2.19 Total: -75.38 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -1.61 Total: -53.71 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -8.22 SS G_CDS: -1.16 Total: -9.39 kcal Total: -85.36 0.15 -85.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739093132.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.380 kcal (2) G-P(sol) polarization free energy of solvation -85.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds