Wall clock time and date at job start Tue Mar 31 2020 23:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47417 * 2 1 4 4 N 1.46504 * 109.46787 * 120.00092 * 2 1 3 5 5 C 1.46493 * 119.99934 * 293.47364 * 4 2 1 6 6 C 1.50704 * 109.47124 * 274.99858 * 5 4 2 7 7 H 1.08001 * 119.99462 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00282 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00034 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00325 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46817 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47492 * 119.99938 * 10 8 6 13 13 H 1.48502 * 109.47543 * 240.00495 * 10 8 6 14 14 S 1.65600 * 119.99815 * 113.47157 * 4 2 1 15 15 O 1.42100 * 106.40318 * 341.60124 * 14 4 2 16 16 O 1.42105 * 106.40128 * 208.67880 * 14 4 2 17 17 C 1.76198 * 107.21879 * 95.14129 * 14 4 2 18 18 C 1.38528 * 120.02739 * 113.26081 * 17 14 4 19 19 C 1.38356 * 120.22023 * 179.97438 * 18 17 14 20 20 C 1.37988 * 120.31918 * 359.97438 * 19 18 17 21 21 C 1.39587 * 119.79476 * 0.02562 * 20 19 18 22 22 C 1.37502 * 120.02269 * 293.23873 * 17 14 4 23 23 C 1.50794 * 133.37732 * 0.02562 * 22 17 14 24 24 O 1.45395 * 106.41462 * 179.97438 * 23 22 17 25 25 C 1.34344 * 109.02130 * 0.02562 * 24 23 22 26 26 O 1.21468 * 124.90000 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47356 * 299.99998 * 1 2 3 28 28 H 1.09001 * 109.46960 * 60.00048 * 1 2 3 29 29 H 1.08995 * 109.47319 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46901 * 239.99600 * 2 1 3 31 31 H 1.08997 * 109.47100 * 173.26115 * 3 2 1 32 32 H 1.09000 * 109.46958 * 293.27197 * 3 2 1 33 33 H 1.09003 * 109.46775 * 53.26824 * 3 2 1 34 34 H 1.09000 * 109.47761 * 34.99932 * 5 4 2 35 35 H 1.09003 * 109.47126 * 155.00270 * 5 4 2 36 36 H 0.96999 * 120.00137 * 180.02562 * 9 8 6 37 37 H 1.08005 * 119.89050 * 0.25589 * 18 17 14 38 38 H 1.07997 * 119.84248 * 180.02562 * 19 18 17 39 39 H 1.07996 * 120.10345 * 179.97438 * 20 19 18 40 40 H 1.09001 * 110.06890 * 299.23342 * 23 22 17 41 41 H 1.08993 * 110.07126 * 60.71005 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7860 -0.1124 2.5220 6 6 2.8714 0.8861 2.8318 7 1 3.6556 1.0717 2.1127 8 6 2.8627 1.5635 4.0326 9 7 1.9075 1.3379 4.9080 10 14 4.2085 2.8006 4.4169 11 1 5.1574 2.8700 3.2766 12 1 3.6028 4.1383 4.6382 13 1 4.9351 2.3776 5.6409 14 16 2.8328 -2.1250 1.0496 15 8 2.5276 -2.6295 -0.2433 16 8 2.5850 -2.8512 2.2457 17 6 4.5542 -1.7491 1.0434 18 6 5.3573 -2.1598 2.0948 19 6 6.7095 -1.8672 2.0937 20 6 7.2695 -1.1650 1.0462 21 6 6.4668 -0.7477 -0.0168 22 6 5.1015 -1.0482 -0.0054 23 6 4.5291 -0.4671 -1.2736 24 8 5.6371 0.1620 -1.9740 25 6 6.7586 0.0026 -1.2518 26 8 7.8551 0.4173 -1.5702 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1234 1.4448 0.1206 32 1 1.7784 1.9203 -0.9441 33 1 1.5817 1.9899 0.8237 34 1 0.8176 0.3877 2.5357 35 1 1.7965 -0.9045 3.2708 36 1 1.9012 1.8147 5.7526 37 1 4.9272 -2.7142 2.9159 38 1 7.3300 -2.1907 2.9163 39 1 8.3253 -0.9381 1.0491 40 1 4.0996 -1.2590 -1.8873 41 1 3.7676 0.2751 -1.0346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739956286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:03 Heat of formation + Delta-G solvation = -113.310938 kcal Electronic energy + Delta-G solvation = -29304.176140 eV Core-core repulsion = 25276.979849 eV Total energy + Delta-G solvation = -4027.196291 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.66266 -38.44585 -37.52537 -37.14666 -36.84729 -35.52583 -32.97043 -32.14539 -31.50701 -30.86682 -27.58607 -27.20755 -26.53219 -24.61543 -23.00017 -22.42492 -21.54682 -20.54453 -18.48364 -17.89256 -17.49332 -17.13515 -16.84021 -16.66741 -16.30981 -15.76317 -15.49675 -14.87357 -14.52649 -14.35265 -13.96903 -13.95268 -13.57027 -13.49202 -13.24185 -12.99485 -12.47352 -12.37616 -12.27780 -12.08349 -12.00556 -11.72471 -11.67961 -11.39255 -11.28971 -11.13876 -11.02794 -10.95361 -10.84424 -10.67580 -10.44222 -10.28668 -10.06646 -9.73691 -9.51701 -9.12837 -8.59953 -8.26875 -6.22282 -4.28014 0.40429 0.63977 0.85407 2.29890 2.90030 3.16015 3.21557 3.26041 3.29433 3.46818 3.51510 3.89448 4.03977 4.27458 4.48644 4.72334 4.87579 4.95857 5.05044 5.10640 5.14023 5.19006 5.37437 5.45376 5.47836 5.51859 5.74519 5.79446 5.87429 5.99983 6.05438 6.12426 6.28985 6.40665 6.42062 6.55092 6.58755 6.93059 7.20297 7.27184 7.31701 7.47083 7.74090 8.01408 8.75736 9.38368 10.85594 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.006696 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.011920 B = 4180.533179 C = 5060.003776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 C -0.161 4.161 4 N -0.975 5.975 5 C 0.244 3.756 6 C -0.538 4.538 7 H 0.063 0.937 8 C 0.068 3.932 9 N -0.887 5.887 10 Si 0.886 3.114 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.283 1.283 14 S 2.684 3.316 15 O -0.972 6.972 16 O -0.950 6.950 17 C -0.639 4.639 18 C 0.029 3.971 19 C -0.146 4.146 20 C 0.011 3.989 21 C -0.220 4.220 22 C -0.002 4.002 23 C 0.057 3.943 24 O -0.311 6.311 25 C 0.526 3.474 26 O -0.456 6.456 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.052 0.948 33 H 0.085 0.915 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.264 0.736 37 H 0.157 0.843 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.013 -4.901 -8.070 9.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.035 3.965 3 C -0.219 4.219 4 N -0.815 5.815 5 C 0.122 3.878 6 C -0.577 4.577 7 H 0.081 0.919 8 C -0.135 4.135 9 N -0.525 5.525 10 Si 0.713 3.287 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.208 1.208 14 S 2.772 3.228 15 O -0.962 6.962 16 O -0.940 6.940 17 C -0.722 4.722 18 C 0.010 3.990 19 C -0.164 4.164 20 C -0.008 4.008 21 C -0.223 4.223 22 C -0.003 4.003 23 C -0.016 4.016 24 O -0.226 6.226 25 C 0.369 3.631 26 O -0.342 6.342 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.071 0.929 33 H 0.103 0.897 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.175 0.825 38 H 0.163 0.837 39 H 0.158 0.842 40 H 0.155 0.845 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.082 -5.362 -8.309 10.358 hybrid contribution 1.451 1.318 0.684 2.077 sum 4.533 -4.044 -7.625 9.749 Atomic orbital electron populations 1.22107 0.94921 1.02052 1.02510 1.20846 0.95108 0.94074 0.86474 1.22286 1.01728 0.95786 1.02137 1.57528 1.67785 1.41492 1.14677 1.19281 0.98137 0.94687 0.75678 1.21571 1.10720 1.23359 1.02088 0.91930 1.24882 0.95739 0.96879 0.96015 1.69925 1.32295 1.41867 1.08393 0.86634 0.82137 0.81372 0.78511 1.19760 1.20830 1.20850 1.02252 0.73262 0.73911 0.73382 1.93528 1.83415 1.78344 1.40936 1.93565 1.83676 1.69622 1.47155 1.30477 1.28291 1.12668 1.00782 1.21301 0.93179 0.90470 0.94045 1.21319 0.95562 1.00496 0.99037 1.21070 0.99805 0.90079 0.89810 1.20828 0.95606 1.06931 0.98899 1.20203 0.94965 0.91618 0.93551 1.23230 0.88253 0.99938 0.90188 1.87239 1.18556 1.70915 1.45887 1.20407 0.83598 0.76851 0.82249 1.90865 1.20897 1.48667 1.73818 0.91221 0.92020 0.92688 0.90023 0.92288 0.92947 0.89654 0.93409 0.92981 0.92573 0.82529 0.83705 0.84186 0.84483 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.27 37.16 0.34 -1.79 16 2 C 0.14 2.11 2.56 -67.93 -0.17 1.94 16 3 C -0.16 -2.37 7.10 37.16 0.26 -2.11 16 4 N -0.97 -17.47 2.72 -108.57 -0.30 -17.77 16 5 C 0.24 5.31 4.90 -5.20 -0.03 5.29 16 6 C -0.54 -12.66 7.71 -34.44 -0.27 -12.93 16 7 H 0.06 1.45 6.73 -52.49 -0.35 1.09 16 8 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -23.64 13.29 55.43 0.74 -22.90 16 10 Si 0.89 19.91 29.54 -169.99 -5.02 14.89 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 14 S 2.68 47.27 5.50 -107.50 -0.59 46.68 16 15 O -0.97 -16.86 15.79 -57.17 -0.90 -17.76 16 16 O -0.95 -19.15 15.64 -57.17 -0.89 -20.04 16 17 C -0.64 -10.38 5.90 -39.74 -0.23 -10.61 16 18 C 0.03 0.43 9.56 -39.43 -0.38 0.06 16 19 C -0.15 -1.84 10.02 -39.63 -0.40 -2.23 16 20 C 0.01 0.14 10.10 -39.17 -0.40 -0.25 16 21 C -0.22 -3.38 6.27 -105.07 -0.66 -4.04 16 22 C 0.00 -0.02 6.09 -104.26 -0.64 -0.66 16 23 C 0.06 0.78 6.78 36.05 0.24 1.02 16 24 O -0.31 -4.68 11.13 -39.18 -0.44 -5.11 16 25 C 0.53 8.59 8.58 34.47 0.30 8.88 16 26 O -0.46 -8.34 18.04 -18.92 -0.34 -8.68 16 27 H 0.07 1.03 6.94 -51.93 -0.36 0.67 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.07 5.71 -51.93 -0.30 0.77 16 31 H 0.06 0.91 5.66 -51.93 -0.29 0.62 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.45 7.24 -51.93 -0.38 1.07 16 34 H 0.05 1.08 6.79 -51.93 -0.35 0.73 16 35 H 0.05 1.26 6.99 -51.93 -0.36 0.90 16 36 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.16 2.17 7.33 -52.48 -0.38 1.79 16 38 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 40 H 0.14 1.57 7.90 -51.93 -0.41 1.16 16 41 H 0.14 1.73 3.64 -51.93 -0.19 1.54 16 LS Contribution 347.06 15.07 5.23 5.23 Total: -1.00 -30.21 347.06 -9.26 -39.47 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.63 Total: 1.82 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -2.11 Total: -15.81 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.44 Total: -40.67 kcal Atomic # 8 Polarization: -49.03 SS G_CDS: -2.57 Total: -51.60 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.02 Total: 14.89 kcal Atomic # 16 Polarization: 47.27 SS G_CDS: -0.59 Total: 46.68 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.21 -9.26 -39.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739956286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.845 kcal (2) G-P(sol) polarization free energy of solvation -30.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds