Wall clock time and date at job start Tue Mar 31 2020 23:07:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47417 * 2 1 4 4 N 1.46504 * 109.46787 * 120.00092 * 2 1 3 5 5 C 1.46493 * 119.99934 * 293.47364 * 4 2 1 6 6 C 1.50704 * 109.47124 * 274.99858 * 5 4 2 7 7 H 1.08001 * 119.99462 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00282 * 179.97438 * 6 5 4 9 9 N 1.31516 * 120.00034 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00325 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.46817 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47492 * 119.99938 * 10 8 6 13 13 H 1.48502 * 109.47543 * 240.00495 * 10 8 6 14 14 S 1.65600 * 119.99815 * 113.47157 * 4 2 1 15 15 O 1.42100 * 106.40318 * 341.60124 * 14 4 2 16 16 O 1.42105 * 106.40128 * 208.67880 * 14 4 2 17 17 C 1.76198 * 107.21879 * 95.14129 * 14 4 2 18 18 C 1.38528 * 120.02739 * 113.26081 * 17 14 4 19 19 C 1.38356 * 120.22023 * 179.97438 * 18 17 14 20 20 C 1.37988 * 120.31918 * 359.97438 * 19 18 17 21 21 C 1.39587 * 119.79476 * 0.02562 * 20 19 18 22 22 C 1.37502 * 120.02269 * 293.23873 * 17 14 4 23 23 C 1.50794 * 133.37732 * 0.02562 * 22 17 14 24 24 O 1.45395 * 106.41462 * 179.97438 * 23 22 17 25 25 C 1.34344 * 109.02130 * 0.02562 * 24 23 22 26 26 O 1.21468 * 124.90000 * 180.02562 * 25 24 23 27 27 H 1.08998 * 109.47356 * 299.99998 * 1 2 3 28 28 H 1.09001 * 109.46960 * 60.00048 * 1 2 3 29 29 H 1.08995 * 109.47319 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46901 * 239.99600 * 2 1 3 31 31 H 1.08997 * 109.47100 * 173.26115 * 3 2 1 32 32 H 1.09000 * 109.46958 * 293.27197 * 3 2 1 33 33 H 1.09003 * 109.46775 * 53.26824 * 3 2 1 34 34 H 1.09000 * 109.47761 * 34.99932 * 5 4 2 35 35 H 1.09003 * 109.47126 * 155.00270 * 5 4 2 36 36 H 0.96999 * 120.00137 * 180.02562 * 9 8 6 37 37 H 1.08005 * 119.89050 * 0.25589 * 18 17 14 38 38 H 1.07997 * 119.84248 * 180.02562 * 19 18 17 39 39 H 1.07996 * 120.10345 * 179.97438 * 20 19 18 40 40 H 1.09001 * 110.06890 * 299.23342 * 23 22 17 41 41 H 1.08993 * 110.07126 * 60.71005 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 1.7860 -0.1124 2.5220 6 6 2.8714 0.8861 2.8318 7 1 3.6556 1.0717 2.1127 8 6 2.8627 1.5635 4.0326 9 7 1.9075 1.3379 4.9080 10 14 4.2085 2.8006 4.4169 11 1 5.1574 2.8700 3.2766 12 1 3.6028 4.1383 4.6382 13 1 4.9351 2.3776 5.6409 14 16 2.8328 -2.1250 1.0496 15 8 2.5276 -2.6295 -0.2433 16 8 2.5850 -2.8512 2.2457 17 6 4.5542 -1.7491 1.0434 18 6 5.3573 -2.1598 2.0948 19 6 6.7095 -1.8672 2.0937 20 6 7.2695 -1.1650 1.0462 21 6 6.4668 -0.7477 -0.0168 22 6 5.1015 -1.0482 -0.0054 23 6 4.5291 -0.4671 -1.2736 24 8 5.6371 0.1620 -1.9740 25 6 6.7586 0.0026 -1.2518 26 8 7.8551 0.4173 -1.5702 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 3.1234 1.4448 0.1206 32 1 1.7784 1.9203 -0.9441 33 1 1.5817 1.9899 0.8237 34 1 0.8176 0.3877 2.5357 35 1 1.7965 -0.9045 3.2708 36 1 1.9012 1.8147 5.7526 37 1 4.9272 -2.7142 2.9159 38 1 7.3300 -2.1907 2.9163 39 1 8.3253 -0.9381 1.0491 40 1 4.0996 -1.2590 -1.8873 41 1 3.7676 0.2751 -1.0346 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739956286.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:02 Heat of formation + Delta-G solvation = -131.883926 kcal Electronic energy + Delta-G solvation = -29304.981526 eV Core-core repulsion = 25276.979849 eV Total energy + Delta-G solvation = -4028.001676 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.82982 -39.61455 -38.81072 -38.46788 -38.29760 -36.98094 -34.79041 -33.25732 -32.65603 -32.31327 -28.91644 -28.66944 -27.74146 -25.77009 -24.75300 -23.55509 -22.76210 -21.83921 -19.78683 -19.21928 -18.74563 -18.58245 -18.31987 -18.04388 -17.55697 -17.06938 -16.77359 -16.45883 -15.92521 -15.55647 -15.38356 -15.12552 -14.77704 -14.72627 -14.60195 -14.14923 -14.01606 -13.74266 -13.53242 -13.51375 -13.25980 -13.14484 -13.06596 -12.94391 -12.70077 -12.68176 -12.41155 -12.28152 -12.17522 -12.07844 -12.01504 -11.58322 -11.46084 -11.35920 -10.70447 -10.53326 -10.23122 -9.79637 -8.14517 -6.23587 -0.77568 -0.63484 -0.36144 1.10125 1.37446 1.43162 1.49932 1.74784 1.90153 2.27039 2.36965 2.42221 2.67658 2.76319 3.18296 3.24443 3.61852 3.80288 3.87153 3.93435 4.00127 4.14478 4.24157 4.30275 4.34856 4.39894 4.53919 4.64381 4.83504 4.93916 4.95196 4.98115 5.10365 5.18696 5.27482 5.30649 5.44558 5.47416 5.57925 5.72951 5.83008 5.96351 6.08351 6.14542 6.87125 7.44889 8.93711 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.009428 B = 0.006696 C = 0.005532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.011920 B = 4180.533179 C = 5060.003776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 C -0.157 4.157 4 N -0.979 5.979 5 C 0.260 3.740 6 C -0.524 4.524 7 H 0.068 0.932 8 C 0.021 3.979 9 N -0.923 5.923 10 Si 0.938 3.062 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.283 1.283 14 S 2.692 3.308 15 O -0.971 6.971 16 O -0.982 6.982 17 C -0.653 4.653 18 C 0.013 3.987 19 C -0.136 4.136 20 C 0.016 3.984 21 C -0.236 4.236 22 C -0.008 4.008 23 C 0.054 3.946 24 O -0.312 6.312 25 C 0.527 3.473 26 O -0.483 6.483 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.053 0.947 30 H 0.106 0.894 31 H 0.050 0.950 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.035 0.965 35 H 0.024 0.976 36 H 0.263 0.737 37 H 0.160 0.840 38 H 0.184 0.816 39 H 0.168 0.832 40 H 0.160 0.840 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.290 -4.707 -9.255 11.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.025 3.975 3 C -0.216 4.216 4 N -0.818 5.818 5 C 0.137 3.863 6 C -0.564 4.564 7 H 0.086 0.914 8 C -0.179 4.179 9 N -0.564 5.564 10 Si 0.765 3.235 11 H -0.193 1.193 12 H -0.210 1.210 13 H -0.209 1.209 14 S 2.783 3.217 15 O -0.961 6.961 16 O -0.973 6.973 17 C -0.740 4.740 18 C -0.006 4.006 19 C -0.154 4.154 20 C -0.002 4.002 21 C -0.238 4.238 22 C -0.010 4.010 23 C -0.019 4.019 24 O -0.226 6.226 25 C 0.371 3.629 26 O -0.371 6.371 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.053 0.947 35 H 0.042 0.958 36 H 0.073 0.927 37 H 0.177 0.823 38 H 0.202 0.798 39 H 0.186 0.814 40 H 0.177 0.823 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.317 -5.177 -9.521 11.666 hybrid contribution 1.066 1.204 0.990 1.888 sum 5.383 -3.973 -8.532 10.842 Atomic orbital electron populations 1.22119 0.94000 1.02251 1.03179 1.21207 0.96051 0.94293 0.85961 1.22238 1.00841 0.95493 1.02981 1.57425 1.68630 1.41556 1.14192 1.18788 0.97127 0.93309 0.77050 1.21806 1.10559 1.22446 1.01544 0.91426 1.25530 0.97382 0.98619 0.96337 1.70029 1.34087 1.43334 1.08912 0.85810 0.80059 0.79457 0.78179 1.19306 1.20976 1.20933 1.01748 0.73708 0.73439 0.72763 1.93516 1.83897 1.78264 1.40442 1.93523 1.84582 1.70650 1.48544 1.30172 1.27113 1.14559 1.02134 1.21594 0.94445 0.90700 0.93866 1.21735 0.94805 0.99128 0.99730 1.21517 1.01090 0.88736 0.88870 1.20957 0.95903 1.07655 0.99319 1.20335 0.95375 0.91436 0.93865 1.23471 0.87820 1.00702 0.89878 1.87220 1.18592 1.70859 1.45961 1.20535 0.83462 0.76419 0.82452 1.90846 1.21860 1.49946 1.74489 0.93081 0.88829 0.92742 0.87590 0.93138 0.89400 0.92346 0.94718 0.95836 0.92744 0.82266 0.79830 0.81407 0.82257 0.83765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.05 9.27 71.98 0.67 -3.38 16 2 C 0.13 3.68 2.56 44.99 0.12 3.80 16 3 C -0.16 -4.36 7.10 71.98 0.51 -3.85 16 4 N -0.98 -34.80 2.72 -497.40 -1.35 -36.15 16 5 C 0.26 11.59 4.90 85.64 0.42 12.01 16 6 C -0.52 -24.70 7.71 25.60 0.20 -24.50 16 7 H 0.07 3.07 6.73 -2.91 -0.02 3.05 16 8 C 0.02 1.06 5.46 84.65 0.46 1.52 16 9 N -0.92 -50.13 13.29 21.45 0.28 -49.84 16 10 Si 0.94 40.60 29.54 68.60 2.03 42.62 16 11 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 14 S 2.69 93.63 5.50 -56.49 -0.31 93.32 16 15 O -0.97 -32.40 15.79 -128.00 -2.02 -34.42 16 16 O -0.98 -40.27 15.64 -128.00 -2.00 -42.27 16 17 C -0.65 -20.46 5.90 22.16 0.13 -20.33 16 18 C 0.01 0.37 9.56 22.37 0.21 0.58 16 19 C -0.14 -3.02 10.02 22.24 0.22 -2.79 16 20 C 0.02 0.38 10.10 22.54 0.23 0.60 16 21 C -0.24 -6.74 6.27 -20.16 -0.13 -6.87 16 22 C -0.01 -0.24 6.09 -19.63 -0.12 -0.36 16 23 C 0.05 1.35 6.78 71.27 0.48 1.84 16 24 O -0.31 -8.79 11.13 -52.89 -0.59 -9.38 16 25 C 0.53 16.34 8.58 70.24 0.60 16.95 16 26 O -0.48 -17.04 18.04 19.63 0.35 -16.69 16 27 H 0.05 1.50 6.94 -2.39 -0.02 1.49 16 28 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.11 2.49 5.71 -2.38 -0.01 2.48 16 31 H 0.05 1.48 5.66 -2.39 -0.01 1.46 16 32 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.95 7.24 -2.39 -0.02 1.93 16 34 H 0.03 1.63 6.79 -2.39 -0.02 1.61 16 35 H 0.02 1.19 6.99 -2.39 -0.02 1.17 16 36 H 0.26 13.69 8.31 -92.71 -0.77 12.92 16 37 H 0.16 4.32 7.33 -2.91 -0.02 4.30 16 38 H 0.18 2.58 8.06 -2.91 -0.02 2.55 16 39 H 0.17 2.97 8.06 -2.91 -0.02 2.95 16 40 H 0.16 3.23 7.90 -2.39 -0.02 3.21 16 41 H 0.15 3.34 3.64 -2.39 -0.01 3.34 16 Total: -1.00 -65.34 347.06 1.48 -63.87 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: 1.08 Total: 13.72 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 4.01 Total: -24.78 kcal Atomic # 7 Polarization: -84.93 SS G_CDS: -1.07 Total: -86.00 kcal Atomic # 8 Polarization: -98.50 SS G_CDS: -4.26 Total: -102.75 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 16 Polarization: 93.63 SS G_CDS: -0.31 Total: 93.32 kcal Total: -65.34 1.48 -63.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739956286.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.019 kcal (2) G-P(sol) polarization free energy of solvation -65.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds