Wall clock time and date at job start Tue Mar 31 2020 22:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31419 * 1 3 3 Si 1.86795 * 119.99622 * 2 1 4 4 H 1.48503 * 109.47176 * 240.00045 * 3 2 1 5 5 H 1.48502 * 109.47446 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47316 * 120.00160 * 3 2 1 7 7 C 1.38942 * 120.00111 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00014 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.34780 * 120.00136 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99734 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00010 * 180.02562 * 10 9 7 13 13 O 1.45201 * 109.47021 * 179.97438 * 12 10 9 14 14 C 1.34776 * 117.00099 * 179.97438 * 13 12 10 15 15 O 1.21521 * 119.99536 * 0.02562 * 14 13 12 16 16 C 1.47339 * 119.99946 * 180.02562 * 14 13 12 17 17 C 1.39901 * 120.06522 * 180.02562 * 16 14 13 18 18 C 1.36590 * 119.92844 * 180.02562 * 17 16 14 19 19 C 1.39326 * 120.06711 * 0.02562 * 18 17 16 20 20 S 1.76195 * 119.92756 * 179.97438 * 19 18 17 21 21 C 1.81399 * 102.99929 * 180.02562 * 20 19 18 22 22 C 1.53005 * 109.47445 * 179.97438 * 21 20 19 23 23 C 1.52996 * 109.47245 * 179.97438 * 22 21 20 24 24 O 1.42900 * 109.46796 * 180.02562 * 23 22 21 25 25 C 1.39325 * 120.13968 * 0.25535 * 19 18 17 26 26 C 1.36588 * 120.06765 * 359.44490 * 25 19 18 27 27 H 0.96992 * 120.00131 * 359.97438 * 1 2 3 28 28 H 0.97002 * 120.00351 * 359.97438 * 9 7 2 29 29 H 1.09001 * 109.47427 * 59.99950 * 12 10 9 30 30 H 1.09004 * 109.47094 * 299.99706 * 12 10 9 31 31 H 1.07994 * 120.03381 * 359.97438 * 17 16 14 32 32 H 1.07996 * 119.96332 * 179.97438 * 18 17 16 33 33 H 1.09001 * 109.47190 * 299.99963 * 21 20 19 34 34 H 1.09004 * 109.47089 * 60.00096 * 21 20 19 35 35 H 1.09001 * 109.46962 * 300.00183 * 22 21 20 36 36 H 1.09004 * 109.46832 * 60.00020 * 22 21 20 37 37 H 1.09001 * 109.47372 * 300.00032 * 23 22 21 38 38 H 1.09004 * 109.47108 * 60.00288 * 23 22 21 39 39 H 0.96700 * 113.99855 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.96290 * 179.70038 * 25 19 18 41 41 H 1.07998 * 120.03508 * 180.25352 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1019 1.6965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0016 10 6 1.9974 -3.5578 -0.0026 11 8 3.2103 -3.5577 -0.0031 12 6 1.2439 -4.8629 -0.0044 13 8 2.1875 -5.9665 -0.0059 14 6 1.6725 -7.2119 -0.0070 15 8 0.4677 -7.3711 -0.0072 16 6 2.5701 -8.3803 -0.0080 17 6 2.0369 -9.6738 -0.0097 18 6 2.8716 -10.7550 -0.0101 19 6 4.2526 -10.5706 -0.0082 20 16 5.3259 -11.9679 -0.0080 21 6 6.9762 -11.2148 -0.0045 22 6 8.0391 -12.3154 -0.0033 23 6 9.4310 -11.6801 -0.0010 24 8 10.4237 -12.7081 -0.0006 25 6 4.7866 -9.2838 -0.0005 26 6 3.9572 -8.1986 -0.0063 27 1 -0.4850 0.8400 0.0004 28 1 0.3535 -2.3906 -0.0016 29 1 0.6176 -4.9197 -0.8947 30 1 0.6170 -4.9216 0.8853 31 1 0.9665 -9.8172 -0.0099 32 1 2.4606 -11.7537 -0.0110 33 1 7.0949 -10.5956 -0.8936 34 1 7.0920 -10.5975 0.8864 35 1 7.9203 -12.9343 0.8860 36 1 7.9235 -12.9331 -0.8940 37 1 9.5495 -11.0615 -0.8906 38 1 9.5469 -11.0622 0.8894 39 1 11.3323 -12.3773 0.0013 40 1 5.8575 -9.1443 0.0058 41 1 4.3717 -7.2014 -0.0046 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000740978176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:09 Heat of formation + Delta-G solvation = -152.498183 kcal Electronic energy + Delta-G solvation = -24809.964383 eV Core-core repulsion = 20781.068805 eV Total energy + Delta-G solvation = -4028.895578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51940 -39.01919 -38.04000 -37.71168 -36.07359 -34.05140 -34.01845 -31.81465 -31.53904 -31.37353 -28.40525 -26.90391 -25.10474 -24.16885 -23.06909 -21.96182 -20.99817 -19.59648 -18.37340 -18.08530 -18.04915 -17.48349 -16.68990 -16.46391 -16.30346 -15.97787 -15.55943 -15.15871 -14.84477 -14.52839 -14.43718 -14.13845 -14.12338 -13.98202 -13.83610 -13.23339 -13.10346 -12.76836 -12.37638 -12.31238 -12.05525 -11.94738 -11.63534 -11.63059 -11.44330 -11.12903 -10.71317 -10.54593 -10.50581 -10.46846 -10.42947 -10.30280 -10.10083 -9.61286 -9.43811 -8.54518 -8.09986 -7.84698 -6.51333 -3.93590 0.32462 0.94632 1.09535 1.88751 2.43047 2.67183 3.13959 3.21577 3.26089 3.51135 3.59715 3.72292 4.09735 4.21143 4.41928 4.45745 4.55322 4.59865 4.61287 4.69022 4.90720 4.95620 5.00756 5.01404 5.13663 5.17003 5.29137 5.39846 5.49617 5.51585 5.66805 5.68583 5.86940 5.89643 6.02784 6.11393 6.44476 6.57102 7.05222 7.45971 7.80999 7.93942 8.46749 9.05227 9.37544 9.87333 10.65725 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.014791 B = 0.001832 C = 0.001633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.533670 B =15276.869277 C =17138.348505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.577 6.577 12 C 0.062 3.938 13 O -0.322 6.322 14 C 0.505 3.495 15 O -0.511 6.511 16 C -0.126 4.126 17 C -0.034 4.034 18 C -0.115 4.115 19 C -0.056 4.056 20 S -0.097 6.097 21 C -0.113 4.113 22 C -0.106 4.106 23 C 0.080 3.920 24 O -0.574 6.574 25 C -0.149 4.149 26 C -0.035 4.035 27 H 0.275 0.725 28 H 0.395 0.605 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.137 0.863 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.384 0.616 40 H 0.132 0.868 41 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.900 -23.979 -0.004 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.433 4.433 8 H 0.123 0.877 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.462 6.462 12 C -0.016 4.016 13 O -0.236 6.236 14 C 0.350 3.650 15 O -0.402 6.402 16 C -0.130 4.130 17 C -0.054 4.054 18 C -0.139 4.139 19 C -0.169 4.169 20 S 0.149 5.851 21 C -0.261 4.261 22 C -0.144 4.144 23 C 0.001 3.999 24 O -0.380 6.380 25 C -0.173 4.173 26 C -0.055 4.055 27 H 0.084 0.916 28 H 0.229 0.771 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.162 0.838 32 H 0.155 0.845 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.231 0.769 40 H 0.149 0.851 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 11.528 -25.446 -0.007 27.935 hybrid contribution 0.263 2.736 0.003 2.749 sum 11.790 -22.709 -0.005 25.588 Atomic orbital electron populations 1.69606 1.05985 1.28612 1.49478 1.25314 0.95694 0.99868 0.96852 0.85853 0.78748 0.80074 0.79170 1.19764 1.20859 1.19769 1.19670 0.93446 0.81765 1.48377 0.87672 1.41694 1.09388 1.04066 1.63725 1.19300 0.88319 0.84053 0.86010 1.90550 1.13417 1.86808 1.55399 1.22771 0.90818 0.84372 1.03636 1.86591 1.40029 1.13886 1.83091 1.21089 0.87136 0.83754 0.73062 1.90830 1.15993 1.86984 1.46345 1.19201 0.93089 0.91270 1.09465 1.20956 1.00952 0.90074 0.93452 1.20425 0.90674 0.99514 1.03292 1.22170 0.97204 0.96520 1.01036 1.85560 0.98547 1.09459 1.91513 1.23614 0.94241 1.01801 1.06481 1.21182 0.91242 0.97175 1.04832 1.22099 0.87809 0.89650 1.00355 1.86448 1.18521 1.35328 1.97752 1.20919 1.00374 0.91067 1.04893 1.21313 0.91964 1.00231 0.91952 0.91556 0.77123 0.89418 0.89413 0.83819 0.84523 0.88681 0.88687 0.89971 0.89977 0.93145 0.93140 0.76900 0.85070 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.90 13.05 55.50 0.72 -23.17 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.94 20.56 29.55 -169.99 -5.02 15.53 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.30 -8.31 9.68 -14.94 -0.14 -8.46 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.62 16 9 N -0.55 -13.86 5.29 -10.97 -0.06 -13.92 16 10 C 0.44 10.49 7.86 -10.98 -0.09 10.40 16 11 O -0.58 -15.81 16.08 -14.11 -0.23 -16.04 16 12 C 0.06 1.17 5.95 36.00 0.21 1.39 16 13 O -0.32 -6.01 8.99 -47.38 -0.43 -6.44 16 14 C 0.50 8.33 7.88 34.43 0.27 8.60 16 15 O -0.51 -9.13 16.13 -19.28 -0.31 -9.45 16 16 C -0.13 -1.70 5.88 -104.95 -0.62 -2.31 16 17 C -0.03 -0.39 9.54 -39.55 -0.38 -0.76 16 18 C -0.12 -1.12 9.73 -39.77 -0.39 -1.51 16 19 C -0.06 -0.54 6.13 -38.77 -0.24 -0.78 16 20 S -0.10 -0.78 21.92 -107.50 -2.36 -3.13 16 21 C -0.11 -0.65 4.33 37.16 0.16 -0.49 16 22 C -0.11 -0.60 5.59 -26.73 -0.15 -0.75 16 23 C 0.08 0.39 7.05 37.16 0.26 0.66 16 24 O -0.57 -3.51 13.66 -35.23 -0.48 -3.99 16 25 C -0.15 -1.47 9.30 -39.77 -0.37 -1.84 16 26 C -0.03 -0.42 9.56 -39.56 -0.38 -0.80 16 27 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 28 H 0.40 9.42 7.90 -40.82 -0.32 9.09 16 29 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.14 1.50 7.64 -52.49 -0.40 1.10 16 32 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.09 0.49 7.75 -51.92 -0.40 0.09 16 34 H 0.09 0.49 7.73 -51.92 -0.40 0.09 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 39 H 0.38 0.65 9.12 45.56 0.42 1.07 16 40 H 0.13 1.00 5.86 -52.49 -0.31 0.69 16 41 H 0.15 1.88 7.60 -52.49 -0.40 1.48 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -33.70 375.95 -8.72 -42.41 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.29 Total: 8.61 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: -1.94 Total: 3.92 kcal Atomic # 7 Polarization: -37.76 SS G_CDS: 0.67 Total: -37.09 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -1.45 Total: -35.92 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.36 Total: -3.13 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.70 -8.72 -42.41 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000740978176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.087 kcal (2) G-P(sol) polarization free energy of solvation -33.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds