Wall clock time and date at job start Tue Mar 31 2020 22:22:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48497 * 109.47432 * 240.00124 * 3 2 1 5 5 H 1.48503 * 109.47055 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47095 * 120.00328 * 3 2 1 7 7 C 1.37873 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00133 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47086 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99793 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00048 * 359.97438 * 11 10 9 13 13 C 1.50707 * 120.00197 * 179.97438 * 11 10 9 14 14 O 1.45192 * 109.47278 * 179.97438 * 13 11 10 15 15 C 1.34230 * 117.00018 * 180.02562 * 14 13 11 16 16 O 1.20826 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.46499 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.35764 * 119.62122 * 90.00191 * 18 17 15 20 20 C 1.35358 * 120.70035 * 180.02562 * 19 18 17 21 21 N 1.48002 * 120.02405 * 179.97438 * 20 19 18 22 22 O 1.21797 * 120.00101 * 0.02562 * 21 20 19 23 23 O 1.21804 * 119.99707 * 179.97438 * 21 20 19 24 24 C 1.40194 * 119.94715 * 359.97434 * 20 19 18 25 25 C 1.36401 * 119.26555 * 0.02562 * 24 20 19 26 26 C 1.34656 * 119.62971 * 269.72757 * 18 17 15 27 27 O 1.22066 * 119.98113 * 359.97438 * 26 18 17 28 28 H 0.96999 * 120.00214 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47038 * 59.99634 * 9 7 2 30 30 H 1.08998 * 109.46860 * 299.99636 * 9 7 2 31 31 H 0.96999 * 120.00469 * 359.97438 * 10 9 7 32 32 H 1.09001 * 109.46950 * 59.99192 * 13 11 10 33 33 H 1.08998 * 109.46940 * 300.00031 * 13 11 10 34 34 H 1.09002 * 109.47060 * 299.99765 * 17 15 14 35 35 H 1.09001 * 109.47380 * 59.99853 * 17 15 14 36 36 H 1.08001 * 119.65169 * 359.97438 * 19 18 17 37 37 H 1.07997 * 120.36434 * 180.02562 * 24 20 19 38 38 H 1.07998 * 120.34312 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0005 11 6 1.7541 -4.8832 -0.0011 12 8 0.5617 -5.1049 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 8 2.0075 -7.2862 -0.0015 15 6 2.7386 -8.4119 -0.0015 16 8 3.9452 -8.3486 -0.0020 17 6 2.0545 -9.7547 -0.0019 18 7 3.0636 -10.8167 -0.0024 19 6 3.5258 -11.3037 1.1776 20 6 4.4583 -12.2845 1.2027 21 7 4.9521 -12.8039 2.4976 22 8 4.5191 -12.3491 3.5412 23 8 5.7910 -13.6868 2.5196 24 6 4.9560 -12.8079 0.0011 25 6 4.4904 -12.3173 -1.1834 26 6 3.5180 -11.3028 -1.1731 27 8 3.0887 -10.8585 -2.2258 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8902 30 1 0.6249 -2.5571 0.8897 31 1 3.1569 -3.4353 -0.0009 32 1 3.3602 -5.9713 0.8883 33 1 3.3600 -5.9705 -0.8916 34 1 1.4315 -9.8453 0.8879 35 1 1.4320 -9.8450 -0.8921 36 1 3.1461 -10.9037 2.1062 37 1 5.6998 -13.5908 0.0133 38 1 4.8614 -12.7081 -2.1193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748916915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:06 Heat of formation + Delta-G solvation = -109.912654 kcal Electronic energy + Delta-G solvation = -27766.098125 eV Core-core repulsion = 23192.755980 eV Total energy + Delta-G solvation = -4573.342145 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.00057 -42.18136 -40.79940 -38.91364 -37.99580 -37.03316 -36.88244 -35.64821 -34.37782 -32.51018 -31.68254 -30.55427 -28.97883 -26.98530 -26.67291 -24.90870 -23.70336 -22.75770 -21.75667 -20.18818 -20.04783 -19.44871 -18.68952 -18.21425 -17.99190 -17.91443 -17.64333 -17.07636 -16.90959 -16.65626 -15.89390 -15.48859 -15.35152 -15.07383 -15.03530 -14.36964 -14.33026 -13.68773 -13.36221 -13.33493 -13.08683 -12.88799 -12.72367 -12.07607 -12.04335 -11.92159 -11.73308 -11.71611 -11.57332 -11.11252 -11.07180 -11.04562 -10.96370 -10.92797 -10.41381 -9.53700 -9.36417 -9.27503 -8.85927 -8.10916 -6.26176 -4.34254 -0.63369 -0.06805 0.57726 1.05208 1.40390 1.53477 2.04647 2.63025 3.00261 3.19653 3.24841 3.26000 3.34101 3.42835 3.62536 3.68798 3.94056 4.08600 4.21472 4.30406 4.40370 4.70940 4.79931 4.88946 4.91839 5.00032 5.10294 5.16082 5.25671 5.75405 5.85910 5.86797 6.89287 7.05339 7.12975 7.15994 7.20171 7.36105 7.51820 7.83979 8.36968 8.60185 8.83364 9.32354 10.83773 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.001818 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.839201 B =15399.617018 C =15915.165975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.251 3.749 10 N -0.704 5.704 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.050 3.950 14 O -0.318 6.318 15 C 0.450 3.550 16 O -0.498 6.498 17 C 0.094 3.906 18 N -0.474 5.474 19 C 0.245 3.755 20 C -0.145 4.145 21 N 0.049 4.951 22 O -0.168 6.168 23 O -0.153 6.153 24 C 0.003 3.997 25 C -0.208 4.208 26 C 0.522 3.478 27 O -0.503 6.503 28 H 0.268 0.732 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.394 0.606 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.152 0.848 35 H 0.159 0.841 36 H 0.196 0.804 37 H 0.165 0.835 38 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 -26.919 1.610 28.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.354 5.354 11 C 0.282 3.718 12 O -0.411 6.411 13 C -0.028 4.028 14 O -0.232 6.232 15 C 0.291 3.709 16 O -0.386 6.386 17 C -0.028 4.028 18 N -0.185 5.185 19 C 0.110 3.890 20 C -0.235 4.235 21 N 0.567 4.433 22 O -0.380 6.380 23 O -0.369 6.369 24 C -0.018 4.018 25 C -0.230 4.230 26 C 0.323 3.677 27 O -0.380 6.380 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.226 0.774 32 H 0.119 0.881 33 H 0.118 0.882 34 H 0.169 0.831 35 H 0.176 0.824 36 H 0.213 0.787 37 H 0.183 0.817 38 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 7.165 -26.257 0.234 27.218 hybrid contribution 1.281 1.022 0.400 1.687 sum 8.446 -25.234 0.634 26.618 Atomic orbital electron populations 1.69954 1.06122 1.27629 1.48390 1.24951 0.94954 0.99524 0.94513 0.86436 0.79400 0.82105 0.78752 1.20013 1.20994 1.20006 1.21154 0.93298 0.90264 1.53909 0.91802 1.19199 0.88106 0.81438 0.98108 1.46382 1.11644 1.05269 1.72109 1.19793 0.89017 0.83949 0.79008 1.90722 1.16190 1.84487 1.49659 1.23007 0.94554 0.80231 1.04975 1.86514 1.39989 1.13868 1.82793 1.23439 0.86730 0.87222 0.73517 1.90754 1.15138 1.87779 1.44917 1.21592 0.89430 0.80865 1.10874 1.45365 1.35480 1.31056 1.06574 1.21730 0.87751 0.87744 0.91756 1.20058 1.09600 1.08286 0.85593 1.42983 0.99236 0.99366 1.01723 1.94583 1.61031 1.61739 1.20651 1.94572 1.25765 1.22720 1.93826 1.21121 0.95589 0.96304 0.88806 1.22127 1.01029 0.99876 0.99934 1.17460 0.83666 0.84130 0.82468 1.91079 1.58103 1.60097 1.28721 0.92241 0.95164 0.95160 0.77353 0.88125 0.88151 0.83080 0.82381 0.78705 0.81724 0.80782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.28 13.29 55.43 0.74 -24.54 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.28 29.54 -169.99 -5.02 15.26 16 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.55 -14.29 9.28 -34.44 -0.32 -14.61 16 8 H 0.06 1.55 7.60 -52.48 -0.40 1.15 16 9 C 0.25 6.34 5.43 -5.20 -0.03 6.32 16 10 N -0.70 -13.76 5.55 -61.48 -0.34 -14.10 16 11 C 0.50 9.26 7.91 -10.98 -0.09 9.18 16 12 O -0.53 -12.17 16.50 -14.10 -0.23 -12.40 16 13 C 0.05 0.66 5.94 36.01 0.21 0.88 16 14 O -0.32 -4.11 9.75 -45.90 -0.45 -4.56 16 15 C 0.45 4.68 8.02 36.01 0.29 4.97 16 16 O -0.50 -6.37 16.18 -18.75 -0.30 -6.67 16 17 C 0.09 0.56 5.93 -5.19 -0.03 0.52 16 18 N -0.47 -3.12 2.07 -121.06 -0.25 -3.37 16 19 C 0.24 1.28 9.81 -16.84 -0.17 1.11 16 20 C -0.15 -0.94 6.82 -80.25 -0.55 -1.49 16 21 N 0.05 0.43 4.45 33.82 0.15 0.58 16 22 O -0.17 -1.59 18.39 -29.46 -0.54 -2.14 16 23 O -0.15 -1.47 18.50 -29.46 -0.54 -2.02 16 24 C 0.00 0.02 9.59 -39.51 -0.38 -0.36 16 25 C -0.21 -1.26 9.99 -39.38 -0.39 -1.66 16 26 C 0.52 4.52 7.40 -15.45 -0.11 4.41 16 27 O -0.50 -6.12 16.63 4.86 0.08 -6.04 16 28 H 0.27 7.20 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.39 6.42 8.32 -40.82 -0.34 6.08 16 32 H 0.10 1.13 8.13 -51.93 -0.42 0.70 16 33 H 0.10 1.20 8.13 -51.93 -0.42 0.78 16 34 H 0.15 0.22 8.01 -51.93 -0.42 -0.19 16 35 H 0.16 0.88 7.38 -51.93 -0.38 0.50 16 36 H 0.20 0.47 7.51 -52.49 -0.39 0.08 16 37 H 0.17 0.56 7.67 -52.49 -0.40 0.16 16 38 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 LS Contribution 359.18 15.07 5.41 5.41 Total: -1.00 -37.07 359.18 -6.54 -43.61 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -3.58 Total: 0.07 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -1.66 Total: 10.91 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.29 Total: -41.44 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -1.99 Total: -33.82 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -37.07 -6.54 -43.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748916915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.301 kcal (2) G-P(sol) polarization free energy of solvation -37.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds