Wall clock time and date at job start Tue Mar 31 2020 22:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99726 * 2 1 4 4 H 1.48497 * 109.47432 * 240.00124 * 3 2 1 5 5 H 1.48503 * 109.47055 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47095 * 120.00328 * 3 2 1 7 7 C 1.37873 * 120.00340 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99998 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00133 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47086 * 180.02562 * 9 7 2 11 11 C 1.34777 * 119.99793 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00048 * 359.97438 * 11 10 9 13 13 C 1.50707 * 120.00197 * 179.97438 * 11 10 9 14 14 O 1.45192 * 109.47278 * 179.97438 * 13 11 10 15 15 C 1.34230 * 117.00018 * 180.02562 * 14 13 11 16 16 O 1.20826 * 120.00015 * 359.97438 * 15 14 13 17 17 C 1.50701 * 120.00046 * 180.02562 * 15 14 13 18 18 N 1.46499 * 109.46992 * 179.97438 * 17 15 14 19 19 C 1.35764 * 119.62122 * 90.00191 * 18 17 15 20 20 C 1.35358 * 120.70035 * 180.02562 * 19 18 17 21 21 N 1.48002 * 120.02405 * 179.97438 * 20 19 18 22 22 O 1.21797 * 120.00101 * 0.02562 * 21 20 19 23 23 O 1.21804 * 119.99707 * 179.97438 * 21 20 19 24 24 C 1.40194 * 119.94715 * 359.97434 * 20 19 18 25 25 C 1.36401 * 119.26555 * 0.02562 * 24 20 19 26 26 C 1.34656 * 119.62971 * 269.72757 * 18 17 15 27 27 O 1.22066 * 119.98113 * 359.97438 * 26 18 17 28 28 H 0.96999 * 120.00214 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.47038 * 59.99634 * 9 7 2 30 30 H 1.08998 * 109.46860 * 299.99636 * 9 7 2 31 31 H 0.96999 * 120.00469 * 359.97438 * 10 9 7 32 32 H 1.09001 * 109.46950 * 59.99192 * 13 11 10 33 33 H 1.08998 * 109.46940 * 300.00031 * 13 11 10 34 34 H 1.09002 * 109.47060 * 299.99765 * 17 15 14 35 35 H 1.09001 * 109.47380 * 59.99853 * 17 15 14 36 36 H 1.08001 * 119.65169 * 359.97438 * 19 18 17 37 37 H 1.07997 * 120.36434 * 180.02562 * 24 20 19 38 38 H 1.07998 * 120.34312 * 180.02562 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 7 2.2033 -3.6125 -0.0005 11 6 1.7541 -4.8832 -0.0011 12 8 0.5617 -5.1049 -0.0011 13 6 2.7334 -6.0287 -0.0016 14 8 2.0075 -7.2862 -0.0015 15 6 2.7386 -8.4119 -0.0015 16 8 3.9452 -8.3486 -0.0020 17 6 2.0545 -9.7547 -0.0019 18 7 3.0636 -10.8167 -0.0024 19 6 3.5258 -11.3037 1.1776 20 6 4.4583 -12.2845 1.2027 21 7 4.9521 -12.8039 2.4976 22 8 4.5191 -12.3491 3.5412 23 8 5.7910 -13.6868 2.5196 24 6 4.9560 -12.8079 0.0011 25 6 4.4904 -12.3173 -1.1834 26 6 3.5180 -11.3028 -1.1731 27 8 3.0887 -10.8585 -2.2258 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8902 30 1 0.6249 -2.5571 0.8897 31 1 3.1569 -3.4353 -0.0009 32 1 3.3602 -5.9713 0.8883 33 1 3.3600 -5.9705 -0.8916 34 1 1.4315 -9.8453 0.8879 35 1 1.4320 -9.8450 -0.8921 36 1 3.1461 -10.9037 2.1062 37 1 5.6998 -13.5908 0.0133 38 1 4.8614 -12.7081 -2.1193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748916915.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:05 Heat of formation + Delta-G solvation = -135.407805 kcal Electronic energy + Delta-G solvation = -27767.203677 eV Core-core repulsion = 23192.755980 eV Total energy + Delta-G solvation = -4574.447698 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.58720 -42.82080 -41.71806 -40.41658 -38.65991 -37.87143 -37.67393 -36.22565 -36.19679 -34.44232 -32.22884 -31.46203 -30.18081 -28.42169 -27.48254 -25.48098 -24.73109 -24.17471 -22.59555 -21.70286 -20.73777 -20.05555 -19.53183 -19.24622 -18.72554 -18.62521 -18.40180 -18.08259 -17.97133 -17.43243 -17.24792 -16.93232 -16.45237 -16.36500 -15.86703 -15.67685 -14.92730 -14.76305 -14.74201 -14.13994 -13.93092 -13.90706 -13.81530 -13.67493 -13.46947 -12.97911 -12.73421 -12.70126 -12.39799 -12.38389 -12.27571 -12.26011 -12.07653 -11.75792 -11.61689 -11.54127 -10.96835 -10.82336 -9.96143 -9.84092 -8.31088 -6.47700 -1.19292 -0.60826 0.00810 0.44398 0.73067 0.78011 1.30306 1.43821 1.46417 1.50765 1.55000 2.03882 2.30835 2.48572 2.91979 2.98846 3.04175 3.24331 3.29211 3.51053 3.64504 3.73565 3.95463 3.97052 4.01321 4.25949 4.37330 4.50134 4.83344 4.96740 5.07659 5.17528 5.20300 5.27367 5.38720 5.59684 5.80452 6.21639 6.32246 6.45311 6.60593 6.73573 7.17963 7.32295 8.80517 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.022433 B = 0.001818 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1247.839201 B =15399.617018 C =15915.165975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.983 3.017 4 H -0.263 1.263 5 H -0.286 1.286 6 H -0.262 1.262 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.699 5.699 11 C 0.500 3.500 12 O -0.581 6.581 13 C 0.062 3.938 14 O -0.335 6.335 15 C 0.453 3.547 16 O -0.524 6.524 17 C 0.097 3.903 18 N -0.472 5.472 19 C 0.258 3.742 20 C -0.153 4.153 21 N 0.052 4.948 22 O -0.179 6.179 23 O -0.175 6.175 24 C 0.016 3.984 25 C -0.215 4.215 26 C 0.514 3.486 27 O -0.548 6.548 28 H 0.269 0.731 29 H -0.007 1.007 30 H -0.005 1.005 31 H 0.412 0.588 32 H 0.130 0.870 33 H 0.120 0.880 34 H 0.203 0.797 35 H 0.163 0.837 36 H 0.227 0.773 37 H 0.184 0.816 38 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.245 -27.482 2.212 29.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.195 4.195 3 Si 0.807 3.193 4 H -0.188 1.188 5 H -0.212 1.212 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.103 0.897 9 C 0.145 3.855 10 N -0.350 5.350 11 C 0.285 3.715 12 O -0.461 6.461 13 C -0.014 4.014 14 O -0.249 6.249 15 C 0.295 3.705 16 O -0.412 6.412 17 C -0.024 4.024 18 N -0.181 5.181 19 C 0.124 3.876 20 C -0.243 4.243 21 N 0.566 4.434 22 O -0.391 6.391 23 O -0.387 6.387 24 C -0.005 4.005 25 C -0.237 4.237 26 C 0.317 3.683 27 O -0.428 6.428 28 H 0.078 0.922 29 H 0.011 0.989 30 H 0.013 0.987 31 H 0.249 0.751 32 H 0.148 0.852 33 H 0.138 0.862 34 H 0.220 0.780 35 H 0.180 0.820 36 H 0.244 0.756 37 H 0.202 0.798 38 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 9.061 -26.880 0.869 28.380 hybrid contribution 0.677 1.117 0.228 1.326 sum 9.738 -25.763 1.096 27.564 Atomic orbital electron populations 1.70113 1.08166 1.28699 1.49694 1.26030 0.95781 1.03809 0.93857 0.85224 0.77917 0.76735 0.79454 1.18808 1.21182 1.18661 1.21578 0.94403 0.90465 1.53213 0.89672 1.18625 0.88529 0.83695 0.94701 1.46055 1.11757 1.04803 1.72421 1.20630 0.89285 0.84653 0.76908 1.90697 1.18761 1.85247 1.51426 1.22783 0.92563 0.78807 1.07285 1.86510 1.40797 1.14279 1.83291 1.24205 0.86533 0.87575 0.72160 1.90746 1.16277 1.88016 1.46202 1.21932 0.88935 0.77992 1.13553 1.45349 1.35431 1.30818 1.06520 1.22151 0.86625 0.86683 0.92183 1.20150 1.10381 1.09041 0.84765 1.43193 0.98918 0.99066 1.02223 1.94572 1.61118 1.61803 1.21560 1.94572 1.26556 1.23484 1.94114 1.21315 0.95161 0.96013 0.88010 1.22210 1.00918 0.99715 1.00884 1.17873 0.83694 0.84313 0.82417 1.91058 1.59773 1.61729 1.30261 0.92184 0.98948 0.98715 0.75149 0.85193 0.86227 0.78048 0.81973 0.75635 0.79847 0.79367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 13.29 21.45 0.28 -54.13 16 2 C 0.01 0.28 5.46 84.65 0.46 0.75 16 3 Si 0.98 41.10 29.54 68.60 2.03 43.13 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 5 H -0.29 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.56 -29.16 9.28 25.60 0.24 -28.93 16 8 H 0.09 3.98 7.60 -2.91 -0.02 3.95 16 9 C 0.27 13.92 5.43 85.63 0.46 14.39 16 10 N -0.70 -27.30 5.55 -466.80 -2.59 -29.89 16 11 C 0.50 18.45 7.91 87.66 0.69 19.14 16 12 O -0.58 -27.20 16.50 15.76 0.26 -26.94 16 13 C 0.06 1.55 5.94 71.24 0.42 1.97 16 14 O -0.33 -8.07 9.75 -45.06 -0.44 -8.51 16 15 C 0.45 8.39 8.02 71.24 0.57 8.97 16 16 O -0.52 -12.24 16.18 21.97 0.36 -11.88 16 17 C 0.10 0.88 5.93 85.63 0.51 1.39 16 18 N -0.47 -5.08 2.07 -655.05 -1.36 -6.44 16 19 C 0.26 1.93 9.81 83.42 0.82 2.75 16 20 C -0.15 -1.63 6.82 36.19 0.25 -1.39 16 21 N 0.05 0.82 4.45 -46.93 -0.21 0.61 16 22 O -0.18 -3.09 18.39 18.89 0.35 -2.74 16 23 O -0.17 -3.17 18.50 18.88 0.35 -2.82 16 24 C 0.02 0.14 9.59 22.32 0.21 0.35 16 25 C -0.22 -2.29 9.99 22.40 0.22 -2.07 16 26 C 0.51 8.23 7.40 84.82 0.63 8.86 16 27 O -0.55 -13.10 16.63 -5.53 -0.09 -13.19 16 28 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 29 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 30 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 31 H 0.41 12.87 8.32 -92.71 -0.77 12.10 16 32 H 0.13 2.52 8.13 -2.39 -0.02 2.50 16 33 H 0.12 2.57 8.13 -2.39 -0.02 2.55 16 34 H 0.20 -0.28 8.01 -2.39 -0.02 -0.29 16 35 H 0.16 1.50 7.38 -2.39 -0.02 1.49 16 36 H 0.23 0.20 7.51 -2.91 -0.02 0.18 16 37 H 0.18 0.84 7.67 -2.91 -0.02 0.82 16 38 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -84.19 359.18 4.80 -79.39 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: 0.37 Total: 7.21 kcal Atomic # 6 Polarization: 20.70 SS G_CDS: 5.49 Total: 26.19 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -3.87 Total: -89.84 kcal Atomic # 8 Polarization: -66.86 SS G_CDS: 0.78 Total: -66.08 kcal Atomic # 14 Polarization: 41.10 SS G_CDS: 2.03 Total: 43.13 kcal Total: -84.19 4.80 -79.39 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748916915.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.022 kcal (2) G-P(sol) polarization free energy of solvation -84.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds