Wall clock time and date at job start Tue Mar 31 2020 22:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30634 * 1 3 3 Si 1.86799 * 119.99911 * 2 1 4 4 H 1.48491 * 109.47216 * 270.00005 * 3 2 1 5 5 H 1.48499 * 109.47331 * 30.00218 * 3 2 1 6 6 H 1.48506 * 109.47086 * 149.99928 * 3 2 1 7 7 C 1.40246 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 197.86306 * 7 2 1 9 9 C 1.41086 * 120.00000 * 17.86636 * 7 2 1 10 10 C 1.40898 * 120.09675 * 204.63831 * 9 7 2 11 11 C 1.36295 * 119.89981 * 180.02562 * 10 9 7 12 12 C 1.40074 * 120.10000 * 359.97438 * 11 10 9 13 13 C 1.47511 * 119.89928 * 179.97438 * 12 11 10 14 14 O 1.21508 * 119.99898 * 0.02562 * 13 12 11 15 15 O 1.34778 * 119.99961 * 180.02562 * 13 12 11 16 16 C 1.45193 * 117.00037 * 180.02562 * 15 13 12 17 17 C 1.53005 * 109.46932 * 179.97438 * 16 15 13 18 18 N 1.46507 * 109.46729 * 65.00089 * 17 16 15 19 19 C 1.47062 * 126.29826 * 274.68475 * 18 17 16 20 20 C 1.54316 * 109.96762 * 150.91195 * 19 18 17 21 21 C 1.55600 * 104.19377 * 45.50373 * 20 19 18 22 22 S 1.66999 * 126.30208 * 95.00219 * 18 17 16 23 23 O 1.42099 * 105.13253 * 298.88694 * 22 18 17 24 24 O 1.42097 * 105.13277 * 68.56003 * 22 18 17 25 25 C 1.40058 * 120.19762 * 0.25870 * 12 11 10 26 26 C 1.36300 * 120.10344 * 359.48065 * 25 12 11 27 27 H 0.96999 * 120.00195 * 359.97438 * 1 2 3 28 28 H 1.08004 * 120.05443 * 359.97438 * 10 9 7 29 29 H 1.08004 * 119.95654 * 179.97438 * 11 10 9 30 30 H 1.09003 * 109.46988 * 299.99649 * 16 15 13 31 31 H 1.09001 * 109.47232 * 59.99923 * 16 15 13 32 32 H 1.08997 * 109.47093 * 184.99433 * 17 16 15 33 33 H 1.09000 * 109.47161 * 305.00058 * 17 16 15 34 34 H 1.09000 * 109.35401 * 271.18665 * 19 18 17 35 35 H 1.08998 * 109.35870 * 30.83060 * 19 18 17 36 36 H 1.09007 * 110.64844 * 286.76883 * 20 19 18 37 37 H 1.08994 * 110.38762 * 164.11433 * 20 19 18 38 38 H 1.09003 * 111.16983 * 204.06401 * 21 20 19 39 39 H 1.08999 * 111.16881 * 79.79350 * 21 20 19 40 40 H 1.08002 * 119.94987 * 179.74380 * 25 12 11 41 41 H 1.08000 * 120.05838 * 180.23152 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.4878 2.0464 -1.4000 5 1 1.4378 2.6527 0.7001 6 1 3.5379 1.4402 0.7001 7 6 2.0075 -1.2146 -0.0005 8 1 3.0485 -1.2373 0.2864 9 6 1.3531 -2.4068 -0.3759 10 6 1.8268 -3.6495 0.0894 11 6 1.1918 -4.7987 -0.2761 12 6 0.0696 -4.7457 -1.1128 13 6 -0.6139 -5.9923 -1.5061 14 8 -0.2036 -7.0630 -1.1041 15 8 -1.6935 -5.9437 -2.3114 16 6 -2.3158 -7.2092 -2.6569 17 6 -3.5166 -6.9545 -3.5702 18 7 -3.0530 -6.3910 -4.8406 19 6 -2.7929 -4.9707 -5.1197 20 6 -1.6979 -4.8376 -6.1988 21 6 -2.1079 -5.8705 -7.2879 22 16 -2.7296 -7.2423 -6.2405 23 8 -1.6845 -8.1409 -5.8951 24 8 -3.9945 -7.7042 -6.6943 25 6 -0.4019 -3.5130 -1.5817 26 6 0.2237 -2.3583 -1.2170 27 1 -0.4850 0.8400 0.0004 28 1 2.6922 -3.6914 0.7342 29 1 1.5543 -5.7518 0.0797 30 1 -1.5929 -7.8403 -3.1740 31 1 -2.6505 -7.7095 -1.7482 32 1 -4.0362 -7.8942 -3.7577 33 1 -4.1973 -6.2528 -3.0883 34 1 -3.7099 -4.4979 -5.4714 35 1 -2.4612 -4.4778 -4.2059 36 1 -0.7198 -5.0862 -5.7867 37 1 -1.6930 -3.8292 -6.6124 38 1 -1.2462 -6.1845 -7.8769 39 1 -2.8968 -5.4754 -7.9280 40 1 -1.2650 -3.4771 -2.2299 41 1 -0.1427 -1.4079 -1.5760 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758680575.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:52 Heat of formation + Delta-G solvation = -135.129692 kcal Electronic energy + Delta-G solvation = -27113.137142 eV Core-core repulsion = 23084.994719 eV Total energy + Delta-G solvation = -4028.142423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.102 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.59552 -37.73775 -37.31211 -37.15648 -36.07799 -35.60419 -33.99203 -33.55404 -30.48973 -29.55599 -29.27256 -26.47109 -25.98164 -23.39055 -22.22640 -21.98622 -21.00234 -19.98570 -19.03701 -17.61586 -17.52326 -17.12552 -16.80495 -16.34716 -15.82642 -15.75389 -15.39212 -14.81733 -14.62757 -14.23321 -14.05153 -13.67275 -13.53848 -13.27864 -13.15310 -12.86638 -12.54769 -12.35717 -12.23496 -12.14066 -12.10131 -12.01520 -11.66682 -11.49489 -11.42166 -11.35220 -11.15722 -11.02221 -10.75580 -10.71426 -10.15854 -10.09012 -9.65733 -9.50398 -9.41656 -9.11610 -7.80671 -7.68301 -7.14399 -4.72223 0.02406 2.03157 2.30977 2.83422 2.89198 2.92101 2.97838 3.37047 3.40760 3.61831 3.66809 3.72729 4.06040 4.30698 4.42768 4.64369 4.73789 4.92195 5.13597 5.16299 5.26595 5.37490 5.44290 5.47485 5.59701 5.68922 5.79849 5.84264 6.09962 6.16799 6.22563 6.40477 6.69795 6.74635 6.94226 7.00749 7.11440 7.36439 7.63147 7.73987 7.78473 7.96279 8.30363 8.52080 8.64717 8.75130 9.76816 Molecular weight = 339.10amu Principal moments of inertia in cm(-1) A = 0.016689 B = 0.002838 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.395003 B = 9863.083336 C =10862.088740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.764 5.764 2 C 0.074 3.926 3 Si 0.916 3.084 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.436 4.436 8 H 0.087 0.913 9 C 0.131 3.869 10 C -0.239 4.239 11 C -0.018 4.018 12 C -0.273 4.273 13 C 0.513 3.487 14 O -0.551 6.551 15 O -0.356 6.356 16 C 0.040 3.960 17 C 0.164 3.836 18 N -0.986 5.986 19 C 0.077 3.923 20 C -0.125 4.125 21 C -0.596 4.596 22 S 2.566 3.434 23 O -0.956 6.956 24 O -0.963 6.963 25 C -0.043 4.043 26 C -0.185 4.185 27 H 0.289 0.711 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.108 0.892 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.779 -2.930 -11.595 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.182 1.182 7 C -0.463 4.463 8 H 0.105 0.895 9 C 0.128 3.872 10 C -0.258 4.258 11 C -0.037 4.037 12 C -0.276 4.276 13 C 0.365 3.635 14 O -0.445 6.445 15 O -0.273 6.273 16 C -0.036 4.036 17 C 0.039 3.961 18 N -0.828 5.828 19 C -0.049 4.049 20 C -0.165 4.165 21 C -0.727 4.727 22 S 2.663 3.337 23 O -0.945 6.945 24 O -0.953 6.953 25 C -0.062 4.062 26 C -0.204 4.204 27 H 0.100 0.900 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.157 0.843 39 H 0.158 0.842 40 H 0.118 0.882 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.086 -4.136 -11.556 14.172 hybrid contribution 0.471 1.282 0.018 1.366 sum -6.615 -2.854 -11.537 13.602 Atomic orbital electron populations 1.69738 1.07970 1.30313 1.30670 1.26146 0.94847 1.02039 0.91856 0.86170 0.80591 0.79594 0.79744 1.18828 1.19920 1.18202 1.19934 0.98502 0.91186 1.36631 0.89502 1.17840 0.90326 0.92145 0.86907 1.20688 1.04681 0.92463 1.07993 1.20363 0.92555 0.97398 0.93389 1.18225 1.04380 0.89317 1.15671 1.21578 0.77169 0.90142 0.74614 1.90707 1.65983 1.32199 1.55599 1.86543 1.43270 1.34234 1.63302 1.23522 0.95633 0.85556 0.98934 1.21120 0.94386 0.99352 0.81210 1.57079 1.83558 1.16780 1.25338 1.22170 0.98072 0.83274 1.01350 1.22711 1.00391 1.00939 0.92412 1.30819 1.12992 1.17746 1.11138 1.06524 0.75420 0.75538 0.76235 1.93633 1.58243 1.61410 1.81200 1.93603 1.41329 1.79170 1.81160 1.20587 0.97047 0.91887 0.96645 1.21001 1.00065 0.97022 1.02309 0.90017 0.88117 0.87998 0.90604 0.90769 0.88561 0.88932 0.90831 0.87382 0.88378 0.87065 0.84252 0.84220 0.88224 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.47 10.95 55.56 0.61 -16.86 16 2 C 0.07 1.63 5.14 -17.31 -0.09 1.54 16 3 Si 0.92 16.43 29.60 -169.99 -5.03 11.40 16 4 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 6 H -0.26 -4.62 7.11 56.52 0.40 -4.22 16 7 C -0.44 -10.35 9.04 -37.75 -0.34 -10.69 16 8 H 0.09 1.97 7.91 -52.48 -0.42 1.55 16 9 C 0.13 3.21 5.58 -106.80 -0.60 2.61 16 10 C -0.24 -5.57 9.73 -39.27 -0.38 -5.96 16 11 C -0.02 -0.42 9.52 -39.59 -0.38 -0.80 16 12 C -0.27 -6.19 5.89 -104.75 -0.62 -6.81 16 13 C 0.51 11.04 7.89 34.51 0.27 11.31 16 14 O -0.55 -12.95 16.11 -19.27 -0.31 -13.26 16 15 O -0.36 -6.33 8.44 -40.71 -0.34 -6.68 16 16 C 0.04 0.59 5.82 37.16 0.22 0.80 16 17 C 0.16 1.82 6.75 -4.03 -0.03 1.79 16 18 N -0.99 -10.96 3.27 -113.19 -0.37 -11.33 16 19 C 0.08 0.71 6.71 -3.05 -0.02 0.69 16 20 C -0.13 -0.98 6.81 -24.66 -0.17 -1.14 16 21 C -0.60 -4.14 7.51 38.54 0.29 -3.85 16 22 S 2.57 28.60 6.17 -107.50 -0.66 27.94 16 23 O -0.96 -14.34 18.13 -57.41 -1.04 -15.38 16 24 O -0.96 -13.13 18.13 -57.41 -1.04 -14.17 16 25 C -0.04 -0.93 9.54 -39.60 -0.38 -1.31 16 26 C -0.18 -4.35 8.63 -39.27 -0.34 -4.69 16 27 H 0.29 5.90 8.29 -40.82 -0.34 5.56 16 28 H 0.10 2.18 8.06 -52.48 -0.42 1.76 16 29 H 0.10 2.25 7.63 -52.48 -0.40 1.85 16 30 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.11 1.16 7.30 -51.93 -0.38 0.78 16 36 H 0.10 0.89 8.14 -51.92 -0.42 0.46 16 37 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.14 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.14 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.10 1.91 7.59 -52.49 -0.40 1.51 16 41 H 0.12 2.87 6.15 -52.49 -0.32 2.54 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -32.47 362.90 -10.56 -43.03 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.28 Total: 6.33 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.56 Total: -16.50 kcal Atomic # 7 Polarization: -28.42 SS G_CDS: 0.24 Total: -28.19 kcal Atomic # 8 Polarization: -46.75 SS G_CDS: -2.74 Total: -49.48 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.03 Total: 11.40 kcal Atomic # 16 Polarization: 28.60 SS G_CDS: -0.66 Total: 27.94 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.47 -10.56 -43.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758680575.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.102 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds